Source Name Comment[ENA_SAMPLE] Characteristics[organism] Characteristics[cell type] Characteristics[phenotype] Characteristics[batch] Characteristics[single cell well quality] Characteristics[individual] Material Type Description Protocol REF Performer Protocol REF Performer Extract Name Comment[LIBRARY_LAYOUT] Comment[LIBRARY_SELECTION] Comment[LIBRARY_SOURCE] Comment[LIBRARY_STRAND] Comment[LIBRARY_STRATEGY] Comment[NOMINAL_LENGTH] Comment[NOMINAL_SDEV] Comment[ORIENTATION] Comment[spike sequence file] Protocol REF Performer Assay Name Technology Type Comment[ENA_EXPERIMENT] Scan Name Comment[SUBMITTED_FILE_NAME] Comment[ENA_RUN] Comment[FASTQ_URI] Comment[SPOT_LENGTH] Comment[READ_INDEX_1_BASE_COORD] Protocol REF Derived Array Data File Comment [Derived ArrayExpress FTP file] Factor Value[phenotype] FactorValue[individual] atac1 Homo sapiens medullary thymic epithelial cell MUC1(pos) atac DNA ATAC-seq P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43454 Philip Brennecke atac1 PAIRED other GENOMIC not applicable OTHER 149 105 5'-3'-3'-5' P-MTAB-43455 Philip Brennecke atac1 sequencing assay P-MTAB-43468 muc1Pos.counts.gz ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3346/E-MTAB-3346.processed.1.zip MUC1(pos) atac2 Homo sapiens medullary thymic epithelial cell MUC1(neg) atac DNA ATAC-seq P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43454 Philip Brennecke atac2 PAIRED other GENOMIC not applicable OTHER 138 98 5'-3'-3'-5' P-MTAB-43455 Philip Brennecke atac2 sequencing assay P-MTAB-43468 muc1Neg.counts.gz ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3346/E-MTAB-3346.processed.1.zip MUC1(neg) atac3 Homo sapiens medullary thymic epithelial cell CEACAM5(pos) atac DNA ATAC-seq P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43454 Philip Brennecke atac3 PAIRED other GENOMIC not applicable OTHER 131 94 5'-3'-3'-5' P-MTAB-43455 Philip Brennecke atac3 sequencing assay P-MTAB-43468 ceacam5Pos.counts.gz ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3346/E-MTAB-3346.processed.1.zip CEACAM5(pos) atac4 Homo sapiens medullary thymic epithelial cell CEACAM5(neg) atac DNA ATAC-seq P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43454 Philip Brennecke atac4 PAIRED other GENOMIC not applicable OTHER 146 103 5'-3'-3'-5' P-MTAB-43455 Philip Brennecke atac4 sequencing assay P-MTAB-43468 ceacam5Neg.counts.gz ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3346/E-MTAB-3346.processed.1.zip CEACAM5(neg) cell17 ERS662353 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell17 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell17 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell17 sequencing assay ERX708639 cell17.fastq.gz cell17.fastq.gz ERR765253 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765253/ERR765253_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell17 cell17 ERS662353 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell17 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell17 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell17 sequencing assay ERX708639 cell17.fastq.gz cell17.fastq.gz ERR765253 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765253/ERR765253_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell17 cell18 ERS662407 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell18 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell18 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell18 sequencing assay ERX708693 cell18.fastq.gz cell18.fastq.gz ERR765443 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765443/ERR765443_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell18 cell18 ERS662407 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell18 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell18 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell18 sequencing assay ERX708693 cell18.fastq.gz cell18.fastq.gz ERR765443 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765443/ERR765443_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell18 cell19 ERS662498 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell19 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell19 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell19 sequencing assay ERX708784 cell19.fastq.gz cell19.fastq.gz ERR765327 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765327/ERR765327_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell19 cell19 ERS662498 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell19 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell19 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell19 sequencing assay ERX708784 cell19.fastq.gz cell19.fastq.gz ERR765327 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765327/ERR765327_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell19 cell2 ERS662244 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2 sequencing assay ERX708530 cell2.fastq.gz cell2.fastq.gz ERR765509 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765509/ERR765509_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2 cell2 ERS662244 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2 sequencing assay ERX708530 cell2.fastq.gz cell2.fastq.gz ERR765509 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765509/ERR765509_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2 cell20 ERS662358 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell20 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell20 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell20 sequencing assay ERX708644 cell20.fastq.gz cell20.fastq.gz ERR765297 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765297/ERR765297_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell20 cell20 ERS662358 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell20 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell20 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell20 sequencing assay ERX708644 cell20.fastq.gz cell20.fastq.gz ERR765297 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765297/ERR765297_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell20 cell21 ERS662447 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell21 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell21 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell21 sequencing assay ERX708733 cell21.fastq.gz cell21.fastq.gz ERR765248 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765248/ERR765248_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell21 cell21 ERS662447 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell21 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell21 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell21 sequencing assay ERX708733 cell21.fastq.gz cell21.fastq.gz ERR765248 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765248/ERR765248_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell21 cell22 ERS662385 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell22 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell22 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell22 sequencing assay ERX708671 cell22.fastq.gz cell22.fastq.gz ERR765240 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765240/ERR765240_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell22 cell22 ERS662385 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell22 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell22 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell22 sequencing assay ERX708671 cell22.fastq.gz cell22.fastq.gz ERR765240 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765240/ERR765240_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell22 cell25 ERS662444 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell25 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell25 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell25 sequencing assay ERX708730 cell25.fastq.gz cell25.fastq.gz ERR765393 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765393/ERR765393_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell25 cell25 ERS662444 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell25 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell25 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell25 sequencing assay ERX708730 cell25.fastq.gz cell25.fastq.gz ERR765393 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765393/ERR765393_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell25 cell28 ERS662388 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell28 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell28 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell28 sequencing assay ERX708674 cell28.fastq.gz cell28.fastq.gz ERR765309 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765309/ERR765309_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell28 cell28 ERS662388 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell28 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell28 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell28 sequencing assay ERX708674 cell28.fastq.gz cell28.fastq.gz ERR765309 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765309/ERR765309_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell28 cell2S1 ERS662366 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S1 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S1 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S1 sequencing assay ERX708652 cell2S1.fastq.gz cell2S1.fastq.gz ERR765512 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765512/ERR765512_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S1 cell2S1 ERS662366 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S1 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S1 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S1 sequencing assay ERX708652 cell2S1.fastq.gz cell2S1.fastq.gz ERR765512 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765512/ERR765512_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S1 cell2S10 ERS662524 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S10 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S10 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S10 sequencing assay ERX708810 cell2S10.fastq.gz cell2S10.fastq.gz ERR765388 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765388/ERR765388_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S10 cell2S10 ERS662524 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S10 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S10 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S10 sequencing assay ERX708810 cell2S10.fastq.gz cell2S10.fastq.gz ERR765388 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765388/ERR765388_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S10 cell2S11 ERS662281 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S11 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S11 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S11 sequencing assay ERX708567 cell2S11.fastq.gz cell2S11.fastq.gz ERR765513 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765513/ERR765513_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S11 cell2S11 ERS662281 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S11 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S11 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S11 sequencing assay ERX708567 cell2S11.fastq.gz cell2S11.fastq.gz ERR765513 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765513/ERR765513_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S11 cell2S12 ERS662354 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S12 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S12 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S12 sequencing assay ERX708640 cell2S12.fastq.gz cell2S12.fastq.gz ERR765571 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765571/ERR765571_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S12 cell2S12 ERS662354 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S12 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S12 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S12 sequencing assay ERX708640 cell2S12.fastq.gz cell2S12.fastq.gz ERR765571 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765571/ERR765571_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S12 cell2S13 ERS662445 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S13 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S13 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S13 sequencing assay ERX708731 cell2S13.fastq.gz cell2S13.fastq.gz ERR765318 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765318/ERR765318_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S13 cell2S13 ERS662445 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S13 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S13 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S13 sequencing assay ERX708731 cell2S13.fastq.gz cell2S13.fastq.gz ERR765318 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765318/ERR765318_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S13 cell2S14 ERS662536 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S14 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S14 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S14 sequencing assay ERX708822 cell2S14.fastq.gz cell2S14.fastq.gz ERR765267 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765267/ERR765267_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S14 cell2S14 ERS662536 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S14 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S14 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S14 sequencing assay ERX708822 cell2S14.fastq.gz cell2S14.fastq.gz ERR765267 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765267/ERR765267_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S14 cell2S15 ERS662473 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S15 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S15 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S15 sequencing assay ERX708759 cell2S15.fastq.gz cell2S15.fastq.gz ERR765525 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765525/ERR765525_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S15 cell2S15 ERS662473 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S15 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S15 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S15 sequencing assay ERX708759 cell2S15.fastq.gz cell2S15.fastq.gz ERR765525 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765525/ERR765525_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S15 cell2S16 ERS662478 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S16 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S16 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S16 sequencing assay ERX708764 cell2S16.fastq.gz cell2S16.fastq.gz ERR765504 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765504/ERR765504_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S16 cell2S16 ERS662478 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S16 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S16 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S16 sequencing assay ERX708764 cell2S16.fastq.gz cell2S16.fastq.gz ERR765504 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765504/ERR765504_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S16 cell2S17 ERS662286 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S17 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S17 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S17 sequencing assay ERX708572 cell2S17.fastq.gz cell2S17.fastq.gz ERR765543 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765543/ERR765543_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S17 cell2S17 ERS662286 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S17 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S17 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S17 sequencing assay ERX708572 cell2S17.fastq.gz cell2S17.fastq.gz ERR765543 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765543/ERR765543_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S17 cell2S18 ERS662393 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S18 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S18 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S18 sequencing assay ERX708679 cell2S18.fastq.gz cell2S18.fastq.gz ERR765419 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765419/ERR765419_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S18 cell2S18 ERS662393 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S18 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S18 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S18 sequencing assay ERX708679 cell2S18.fastq.gz cell2S18.fastq.gz ERR765419 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765419/ERR765419_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S18 cell2S19 ERS662421 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S19 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S19 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S19 sequencing assay ERX708707 cell2S19.fastq.gz cell2S19.fastq.gz ERR765274 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765274/ERR765274_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S19 cell2S19 ERS662421 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S19 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S19 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S19 sequencing assay ERX708707 cell2S19.fastq.gz cell2S19.fastq.gz ERR765274 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765274/ERR765274_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S19 cell2S2 ERS662507 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S2 sequencing assay ERX708793 cell2S2.fastq.gz cell2S2.fastq.gz ERR765370 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765370/ERR765370_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S2 cell2S2 ERS662507 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S2 sequencing assay ERX708793 cell2S2.fastq.gz cell2S2.fastq.gz ERR765370 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765370/ERR765370_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S2 cell2S20 ERS662350 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S20 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S20 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S20 sequencing assay ERX708636 cell2S20.fastq.gz cell2S20.fastq.gz ERR765404 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765404/ERR765404_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S20 cell2S20 ERS662350 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S20 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S20 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S20 sequencing assay ERX708636 cell2S20.fastq.gz cell2S20.fastq.gz ERR765404 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765404/ERR765404_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S20 cell2S21 ERS662476 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S21 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S21 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S21 sequencing assay ERX708762 cell2S21.fastq.gz cell2S21.fastq.gz ERR765536 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765536/ERR765536_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S21 cell2S21 ERS662476 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S21 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S21 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S21 sequencing assay ERX708762 cell2S21.fastq.gz cell2S21.fastq.gz ERR765536 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765536/ERR765536_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S21 cell2S22 ERS662409 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S22 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S22 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S22 sequencing assay ERX708695 cell2S22.fastq.gz cell2S22.fastq.gz ERR765357 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765357/ERR765357_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S22 cell2S22 ERS662409 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S22 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S22 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S22 sequencing assay ERX708695 cell2S22.fastq.gz cell2S22.fastq.gz ERR765357 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765357/ERR765357_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S22 cell2S23 ERS662384 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S23 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S23 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S23 sequencing assay ERX708670 cell2S23.fastq.gz cell2S23.fastq.gz ERR765432 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765432/ERR765432_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S23 cell2S23 ERS662384 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S23 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S23 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S23 sequencing assay ERX708670 cell2S23.fastq.gz cell2S23.fastq.gz ERR765432 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765432/ERR765432_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S23 cell2S24 ERS662278 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S24 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S24 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S24 sequencing assay ERX708564 cell2S24.fastq.gz cell2S24.fastq.gz ERR765299 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765299/ERR765299_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S24 cell2S24 ERS662278 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S24 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S24 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S24 sequencing assay ERX708564 cell2S24.fastq.gz cell2S24.fastq.gz ERR765299 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765299/ERR765299_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S24 cell2S25 ERS662383 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S25 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S25 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S25 sequencing assay ERX708669 cell2S25.fastq.gz cell2S25.fastq.gz ERR765279 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765279/ERR765279_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S25 cell2S25 ERS662383 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S25 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S25 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S25 sequencing assay ERX708669 cell2S25.fastq.gz cell2S25.fastq.gz ERR765279 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765279/ERR765279_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S25 cell2S26 ERS662303 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S26 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S26 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S26 sequencing assay ERX708589 cell2S26.fastq.gz cell2S26.fastq.gz ERR765395 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765395/ERR765395_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S26 cell2S26 ERS662303 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S26 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S26 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S26 sequencing assay ERX708589 cell2S26.fastq.gz cell2S26.fastq.gz ERR765395 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765395/ERR765395_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S26 cell2S27 ERS662508 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S27 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S27 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S27 sequencing assay ERX708794 cell2S27.fastq.gz cell2S27.fastq.gz ERR765366 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765366/ERR765366_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S27 cell2S27 ERS662508 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S27 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S27 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S27 sequencing assay ERX708794 cell2S27.fastq.gz cell2S27.fastq.gz ERR765366 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765366/ERR765366_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S27 cell2S28 ERS662417 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S28 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S28 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S28 sequencing assay ERX708703 cell2S28.fastq.gz cell2S28.fastq.gz ERR765272 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765272/ERR765272_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S28 cell2S28 ERS662417 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S28 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S28 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S28 sequencing assay ERX708703 cell2S28.fastq.gz cell2S28.fastq.gz ERR765272 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765272/ERR765272_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S28 cell2S29 ERS662265 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S29 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S29 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S29 sequencing assay ERX708551 cell2S29.fastq.gz cell2S29.fastq.gz ERR765473 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765473/ERR765473_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S29 cell2S29 ERS662265 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S29 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S29 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S29 sequencing assay ERX708551 cell2S29.fastq.gz cell2S29.fastq.gz ERR765473 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765473/ERR765473_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S29 cell2S3 ERS662519 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S3 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S3 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S3 sequencing assay ERX708805 cell2S3.fastq.gz cell2S3.fastq.gz ERR765411 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765411/ERR765411_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S3 cell2S3 ERS662519 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S3 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S3 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S3 sequencing assay ERX708805 cell2S3.fastq.gz cell2S3.fastq.gz ERR765411 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765411/ERR765411_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S3 cell2S30 ERS662367 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S30 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S30 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S30 sequencing assay ERX708653 cell2S30.fastq.gz cell2S30.fastq.gz ERR765452 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765452/ERR765452_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S30 cell2S30 ERS662367 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S30 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S30 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S30 sequencing assay ERX708653 cell2S30.fastq.gz cell2S30.fastq.gz ERR765452 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765452/ERR765452_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S30 cell2S31 ERS662321 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S31 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S31 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S31 sequencing assay ERX708607 cell2S31.fastq.gz cell2S31.fastq.gz ERR765343 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765343/ERR765343_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S31 cell2S31 ERS662321 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S31 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S31 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S31 sequencing assay ERX708607 cell2S31.fastq.gz cell2S31.fastq.gz ERR765343 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765343/ERR765343_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S31 cell2S32 ERS662237 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S32 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S32 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S32 sequencing assay ERX708523 cell2S32.fastq.gz cell2S32.fastq.gz ERR765282 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765282/ERR765282_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S32 cell2S32 ERS662237 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S32 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S32 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S32 sequencing assay ERX708523 cell2S32.fastq.gz cell2S32.fastq.gz ERR765282 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765282/ERR765282_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S32 cell2S33 ERS662463 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S33 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S33 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S33 sequencing assay ERX708749 cell2S33.fastq.gz cell2S33.fastq.gz ERR765264 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765264/ERR765264_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S33 cell2S33 ERS662463 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S33 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S33 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S33 sequencing assay ERX708749 cell2S33.fastq.gz cell2S33.fastq.gz ERR765264 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765264/ERR765264_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S33 cell2S34 ERS662376 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S34 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S34 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S34 sequencing assay ERX708662 cell2S34.fastq.gz cell2S34.fastq.gz ERR765261 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765261/ERR765261_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S34 cell2S34 ERS662376 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S34 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S34 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S34 sequencing assay ERX708662 cell2S34.fastq.gz cell2S34.fastq.gz ERR765261 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765261/ERR765261_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S34 cell2S35 ERS662312 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S35 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S35 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S35 sequencing assay ERX708598 cell2S35.fastq.gz cell2S35.fastq.gz ERR765270 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765270/ERR765270_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S35 cell2S35 ERS662312 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S35 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S35 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S35 sequencing assay ERX708598 cell2S35.fastq.gz cell2S35.fastq.gz ERR765270 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765270/ERR765270_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S35 cell2S36 ERS662223 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S36 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S36 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S36 sequencing assay ERX708509 cell2S36.fastq.gz cell2S36.fastq.gz ERR765450 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765450/ERR765450_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S36 cell2S36 ERS662223 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S36 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S36 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S36 sequencing assay ERX708509 cell2S36.fastq.gz cell2S36.fastq.gz ERR765450 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765450/ERR765450_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S36 cell2S37 ERS662415 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S37 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S37 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S37 sequencing assay ERX708701 cell2S37.fastq.gz cell2S37.fastq.gz ERR765470 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765470/ERR765470_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S37 cell2S37 ERS662415 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S37 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S37 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S37 sequencing assay ERX708701 cell2S37.fastq.gz cell2S37.fastq.gz ERR765470 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765470/ERR765470_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S37 cell2S38 ERS662327 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S38 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S38 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S38 sequencing assay ERX708613 cell2S38.fastq.gz cell2S38.fastq.gz ERR765315 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765315/ERR765315_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S38 cell2S38 ERS662327 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S38 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S38 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S38 sequencing assay ERX708613 cell2S38.fastq.gz cell2S38.fastq.gz ERR765315 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765315/ERR765315_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S38 cell2S39 ERS662544 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S39 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S39 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S39 sequencing assay ERX708830 cell2S39.fastq.gz cell2S39.fastq.gz ERR765483 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765483/ERR765483_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S39 cell2S39 ERS662544 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S39 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S39 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S39 sequencing assay ERX708830 cell2S39.fastq.gz cell2S39.fastq.gz ERR765483 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765483/ERR765483_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S39 cell2S4 ERS662442 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S4 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S4 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S4 sequencing assay ERX708728 cell2S4.fastq.gz cell2S4.fastq.gz ERR765242 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765242/ERR765242_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S4 cell2S4 ERS662442 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S4 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S4 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S4 sequencing assay ERX708728 cell2S4.fastq.gz cell2S4.fastq.gz ERR765242 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765242/ERR765242_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S4 cell2S40 ERS662331 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S40 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S40 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S40 sequencing assay ERX708617 cell2S40.fastq.gz cell2S40.fastq.gz ERR765353 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765353/ERR765353_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S40 cell2S40 ERS662331 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S40 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S40 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S40 sequencing assay ERX708617 cell2S40.fastq.gz cell2S40.fastq.gz ERR765353 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765353/ERR765353_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S40 cell2S41 ERS662469 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S41 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S41 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S41 sequencing assay ERX708755 cell2S41.fastq.gz cell2S41.fastq.gz ERR765551 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765551/ERR765551_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S41 cell2S41 ERS662469 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S41 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S41 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S41 sequencing assay ERX708755 cell2S41.fastq.gz cell2S41.fastq.gz ERR765551 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765551/ERR765551_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S41 cell2S42 ERS662518 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S42 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S42 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S42 sequencing assay ERX708804 cell2S42.fastq.gz cell2S42.fastq.gz ERR765244 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765244/ERR765244_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S42 cell2S42 ERS662518 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S42 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S42 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S42 sequencing assay ERX708804 cell2S42.fastq.gz cell2S42.fastq.gz ERR765244 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765244/ERR765244_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S42 cell2S43 ERS662228 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S43 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S43 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S43 sequencing assay ERX708514 cell2S43.fastq.gz cell2S43.fastq.gz ERR765331 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765331/ERR765331_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S43 cell2S43 ERS662228 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S43 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S43 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S43 sequencing assay ERX708514 cell2S43.fastq.gz cell2S43.fastq.gz ERR765331 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765331/ERR765331_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S43 cell2S44 ERS662320 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S44 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S44 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S44 sequencing assay ERX708606 cell2S44.fastq.gz cell2S44.fastq.gz ERR765423 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765423/ERR765423_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S44 cell2S44 ERS662320 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S44 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S44 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S44 sequencing assay ERX708606 cell2S44.fastq.gz cell2S44.fastq.gz ERR765423 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765423/ERR765423_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S44 cell2S45 ERS662328 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S45 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S45 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S45 sequencing assay ERX708614 cell2S45.fastq.gz cell2S45.fastq.gz ERR765451 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765451/ERR765451_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S45 cell2S45 ERS662328 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S45 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S45 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S45 sequencing assay ERX708614 cell2S45.fastq.gz cell2S45.fastq.gz ERR765451 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765451/ERR765451_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S45 cell2S46 ERS662395 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S46 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S46 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S46 sequencing assay ERX708681 cell2S46.fastq.gz cell2S46.fastq.gz ERR765387 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765387/ERR765387_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S46 cell2S46 ERS662395 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S46 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S46 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S46 sequencing assay ERX708681 cell2S46.fastq.gz cell2S46.fastq.gz ERR765387 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765387/ERR765387_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S46 cell2S47 ERS662491 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S47 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S47 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S47 sequencing assay ERX708777 cell2S47.fastq.gz cell2S47.fastq.gz ERR765497 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765497/ERR765497_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S47 cell2S47 ERS662491 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S47 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S47 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S47 sequencing assay ERX708777 cell2S47.fastq.gz cell2S47.fastq.gz ERR765497 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765497/ERR765497_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S47 cell2S48 ERS662259 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S48 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S48 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S48 sequencing assay ERX708545 cell2S48.fastq.gz cell2S48.fastq.gz ERR765332 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765332/ERR765332_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S48 cell2S48 ERS662259 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S48 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S48 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S48 sequencing assay ERX708545 cell2S48.fastq.gz cell2S48.fastq.gz ERR765332 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765332/ERR765332_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S48 cell2S5 ERS662378 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S5 sequencing assay ERX708664 cell2S5.fastq.gz cell2S5.fastq.gz ERR765365 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765365/ERR765365_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S5 cell2S5 ERS662378 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S5 sequencing assay ERX708664 cell2S5.fastq.gz cell2S5.fastq.gz ERR765365 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765365/ERR765365_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S5 cell2S6 ERS662284 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S6 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S6 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S6 sequencing assay ERX708570 cell2S6.fastq.gz cell2S6.fastq.gz ERR765256 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765256/ERR765256_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S6 cell2S6 ERS662284 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S6 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S6 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S6 sequencing assay ERX708570 cell2S6.fastq.gz cell2S6.fastq.gz ERR765256 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765256/ERR765256_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S6 cell2S7 ERS662289 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S7 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S7 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S7 sequencing assay ERX708575 cell2S7.fastq.gz cell2S7.fastq.gz ERR765555 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765555/ERR765555_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S7 cell2S7 ERS662289 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S7 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S7 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S7 sequencing assay ERX708575 cell2S7.fastq.gz cell2S7.fastq.gz ERR765555 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765555/ERR765555_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S7 cell2S8 ERS662555 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S8 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S8 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S8 sequencing assay ERX708841 cell2S8.fastq.gz cell2S8.fastq.gz ERR765328 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765328/ERR765328_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S8 cell2S8 ERS662555 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S8 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S8 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S8 sequencing assay ERX708841 cell2S8.fastq.gz cell2S8.fastq.gz ERR765328 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765328/ERR765328_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S8 cell2S9 ERS662346 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S9 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S9 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S9 sequencing assay ERX708632 cell2S9.fastq.gz cell2S9.fastq.gz ERR765359 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765359/ERR765359_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S9 cell2S9 ERS662346 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford2 OK cell2S9 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell2S9 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell2S9 sequencing assay ERX708632 cell2S9.fastq.gz cell2S9.fastq.gz ERR765359 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765359/ERR765359_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell2S9 cell30 ERS662522 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell30 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell30 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell30 sequencing assay ERX708808 cell30.fastq.gz cell30.fastq.gz ERR765294 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765294/ERR765294_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell30 cell30 ERS662522 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell30 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell30 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell30 sequencing assay ERX708808 cell30.fastq.gz cell30.fastq.gz ERR765294 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765294/ERR765294_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell30 cell32 ERS662242 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell32 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell32 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell32 sequencing assay ERX708528 cell32.fastq.gz cell32.fastq.gz ERR765278 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765278/ERR765278_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell32 cell32 ERS662242 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell32 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell32 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell32 sequencing assay ERX708528 cell32.fastq.gz cell32.fastq.gz ERR765278 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765278/ERR765278_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell32 cell34 ERS662426 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell34 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell34 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell34 sequencing assay ERX708712 cell34.fastq.gz cell34.fastq.gz ERR765461 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765461/ERR765461_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell34 cell34 ERS662426 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell34 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell34 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell34 sequencing assay ERX708712 cell34.fastq.gz cell34.fastq.gz ERR765461 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765461/ERR765461_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell34 cell35 ERS662494 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell35 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell35 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell35 sequencing assay ERX708780 cell35.fastq.gz cell35.fastq.gz ERR765336 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765336/ERR765336_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell35 cell35 ERS662494 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell35 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell35 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell35 sequencing assay ERX708780 cell35.fastq.gz cell35.fastq.gz ERR765336 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765336/ERR765336_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell35 cell37 ERS662558 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell37 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell37 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell37 sequencing assay ERX708844 cell37.fastq.gz cell37.fastq.gz ERR765374 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765374/ERR765374_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell37 cell37 ERS662558 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell37 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell37 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell37 sequencing assay ERX708844 cell37.fastq.gz cell37.fastq.gz ERR765374 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765374/ERR765374_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell37 cell39 ERS662355 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell39 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell39 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell39 sequencing assay ERX708641 cell39.fastq.gz cell39.fastq.gz ERR765325 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765325/ERR765325_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell39 cell39 ERS662355 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell39 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell39 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell39 sequencing assay ERX708641 cell39.fastq.gz cell39.fastq.gz ERR765325 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765325/ERR765325_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell39 cell3S1 ERS662282 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S1 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S1 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S1 sequencing assay ERX708568 cell3S1.fastq.gz cell3S1.fastq.gz ERR765284 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765284/ERR765284_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S1 cell3S1 ERS662282 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S1 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S1 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S1 sequencing assay ERX708568 cell3S1.fastq.gz cell3S1.fastq.gz ERR765284 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765284/ERR765284_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S1 cell3S10 ERS662283 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S10 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S10 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S10 sequencing assay ERX708569 cell3S10.fastq.gz cell3S10.fastq.gz ERR765268 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765268/ERR765268_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S10 cell3S10 ERS662283 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S10 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S10 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S10 sequencing assay ERX708569 cell3S10.fastq.gz cell3S10.fastq.gz ERR765268 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765268/ERR765268_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S10 cell3S11 ERS662359 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S11 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S11 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S11 sequencing assay ERX708645 cell3S11.fastq.gz cell3S11.fastq.gz ERR765482 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765482/ERR765482_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S11 cell3S11 ERS662359 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S11 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S11 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S11 sequencing assay ERX708645 cell3S11.fastq.gz cell3S11.fastq.gz ERR765482 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765482/ERR765482_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S11 cell3S12 ERS662297 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S12 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S12 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S12 sequencing assay ERX708583 cell3S12.fastq.gz cell3S12.fastq.gz ERR765486 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765486/ERR765486_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S12 cell3S12 ERS662297 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S12 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S12 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S12 sequencing assay ERX708583 cell3S12.fastq.gz cell3S12.fastq.gz ERR765486 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765486/ERR765486_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S12 cell3S13 ERS662329 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S13 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S13 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S13 sequencing assay ERX708615 cell3S13.fastq.gz cell3S13.fastq.gz ERR765453 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765453/ERR765453_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S13 cell3S13 ERS662329 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S13 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S13 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S13 sequencing assay ERX708615 cell3S13.fastq.gz cell3S13.fastq.gz ERR765453 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765453/ERR765453_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S13 cell3S14 ERS662458 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S14 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S14 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S14 sequencing assay ERX708744 cell3S14.fastq.gz cell3S14.fastq.gz ERR765440 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765440/ERR765440_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S14 cell3S14 ERS662458 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S14 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S14 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S14 sequencing assay ERX708744 cell3S14.fastq.gz cell3S14.fastq.gz ERR765440 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765440/ERR765440_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S14 cell3S15 ERS662545 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S15 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S15 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S15 sequencing assay ERX708831 cell3S15.fastq.gz cell3S15.fastq.gz ERR765562 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765562/ERR765562_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S15 cell3S15 ERS662545 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S15 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S15 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S15 sequencing assay ERX708831 cell3S15.fastq.gz cell3S15.fastq.gz ERR765562 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765562/ERR765562_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S15 cell3S16 ERS662517 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S16 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S16 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S16 sequencing assay ERX708803 cell3S16.fastq.gz cell3S16.fastq.gz ERR765321 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765321/ERR765321_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S16 cell3S16 ERS662517 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S16 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S16 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S16 sequencing assay ERX708803 cell3S16.fastq.gz cell3S16.fastq.gz ERR765321 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765321/ERR765321_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S16 cell3S17 ERS662361 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S17 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S17 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S17 sequencing assay ERX708647 cell3S17.fastq.gz cell3S17.fastq.gz ERR765304 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765304/ERR765304_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S17 cell3S17 ERS662361 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S17 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S17 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S17 sequencing assay ERX708647 cell3S17.fastq.gz cell3S17.fastq.gz ERR765304 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765304/ERR765304_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S17 cell3S18 ERS662319 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S18 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S18 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S18 sequencing assay ERX708605 cell3S18.fastq.gz cell3S18.fastq.gz ERR765392 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765392/ERR765392_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S18 cell3S18 ERS662319 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S18 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S18 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S18 sequencing assay ERX708605 cell3S18.fastq.gz cell3S18.fastq.gz ERR765392 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765392/ERR765392_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S18 cell3S19 ERS662551 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S19 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S19 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S19 sequencing assay ERX708837 cell3S19.fastq.gz cell3S19.fastq.gz ERR765401 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765401/ERR765401_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S19 cell3S19 ERS662551 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S19 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S19 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S19 sequencing assay ERX708837 cell3S19.fastq.gz cell3S19.fastq.gz ERR765401 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765401/ERR765401_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S19 cell3S2 ERS662337 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S2 sequencing assay ERX708623 cell3S2.fastq.gz cell3S2.fastq.gz ERR765430 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765430/ERR765430_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S2 cell3S2 ERS662337 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S2 sequencing assay ERX708623 cell3S2.fastq.gz cell3S2.fastq.gz ERR765430 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765430/ERR765430_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S2 cell3S20 ERS662505 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S20 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S20 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S20 sequencing assay ERX708791 cell3S20.fastq.gz cell3S20.fastq.gz ERR765468 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765468/ERR765468_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S20 cell3S20 ERS662505 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S20 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S20 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S20 sequencing assay ERX708791 cell3S20.fastq.gz cell3S20.fastq.gz ERR765468 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765468/ERR765468_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S20 cell3S3 ERS662434 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S3 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S3 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S3 sequencing assay ERX708720 cell3S3.fastq.gz cell3S3.fastq.gz ERR765466 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765466/ERR765466_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S3 cell3S3 ERS662434 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S3 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S3 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S3 sequencing assay ERX708720 cell3S3.fastq.gz cell3S3.fastq.gz ERR765466 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765466/ERR765466_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S3 cell3S4 ERS662341 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S4 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S4 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S4 sequencing assay ERX708627 cell3S4.fastq.gz cell3S4.fastq.gz ERR765488 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765488/ERR765488_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S4 cell3S4 ERS662341 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S4 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S4 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S4 sequencing assay ERX708627 cell3S4.fastq.gz cell3S4.fastq.gz ERR765488 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765488/ERR765488_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S4 cell3S5 ERS662243 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S5 sequencing assay ERX708529 cell3S5.fastq.gz cell3S5.fastq.gz ERR765275 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765275/ERR765275_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S5 cell3S5 ERS662243 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S5 sequencing assay ERX708529 cell3S5.fastq.gz cell3S5.fastq.gz ERR765275 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765275/ERR765275_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S5 cell3S6 ERS662521 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S6 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S6 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S6 sequencing assay ERX708807 cell3S6.fastq.gz cell3S6.fastq.gz ERR765371 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765371/ERR765371_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S6 cell3S6 ERS662521 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S6 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S6 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S6 sequencing assay ERX708807 cell3S6.fastq.gz cell3S6.fastq.gz ERR765371 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765371/ERR765371_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S6 cell3S7 ERS662430 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S7 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S7 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S7 sequencing assay ERX708716 cell3S7.fastq.gz cell3S7.fastq.gz ERR765259 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765259/ERR765259_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S7 cell3S7 ERS662430 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S7 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S7 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S7 sequencing assay ERX708716 cell3S7.fastq.gz cell3S7.fastq.gz ERR765259 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765259/ERR765259_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S7 cell3S8 ERS662311 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S8 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S8 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S8 sequencing assay ERX708597 cell3S8.fastq.gz cell3S8.fastq.gz ERR765314 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765314/ERR765314_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S8 cell3S8 ERS662311 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S8 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S8 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S8 sequencing assay ERX708597 cell3S8.fastq.gz cell3S8.fastq.gz ERR765314 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765314/ERR765314_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S8 cell3S9 ERS662394 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S9 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S9 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S9 sequencing assay ERX708680 cell3S9.fastq.gz cell3S9.fastq.gz ERR765569 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765569/ERR765569_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S9 cell3S9 ERS662394 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford3 OK cell3S9 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell3S9 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell3S9 sequencing assay ERX708680 cell3S9.fastq.gz cell3S9.fastq.gz ERR765569 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765569/ERR765569_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell3S9 cell40 ERS662290 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell40 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell40 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell40 sequencing assay ERX708576 cell40.fastq.gz cell40.fastq.gz ERR765548 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765548/ERR765548_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell40 cell40 ERS662290 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell40 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell40 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell40 sequencing assay ERX708576 cell40.fastq.gz cell40.fastq.gz ERR765548 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765548/ERR765548_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell40 cell41 ERS662540 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell41 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell41 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell41 sequencing assay ERX708826 cell41.fastq.gz cell41.fastq.gz ERR765308 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765308/ERR765308_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell41 cell41 ERS662540 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell41 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell41 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell41 sequencing assay ERX708826 cell41.fastq.gz cell41.fastq.gz ERR765308 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765308/ERR765308_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell41 cell43 ERS662330 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell43 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell43 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell43 sequencing assay ERX708616 cell43.fastq.gz cell43.fastq.gz ERR765405 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765405/ERR765405_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell43 cell43 ERS662330 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell43 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell43 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell43 sequencing assay ERX708616 cell43.fastq.gz cell43.fastq.gz ERR765405 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765405/ERR765405_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell43 cell44 ERS662240 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell44 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell44 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell44 sequencing assay ERX708526 cell44.fastq.gz cell44.fastq.gz ERR765442 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765442/ERR765442_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell44 cell44 ERS662240 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell44 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell44 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell44 sequencing assay ERX708526 cell44.fastq.gz cell44.fastq.gz ERR765442 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765442/ERR765442_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell44 cell46 ERS662360 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell46 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell46 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell46 sequencing assay ERX708646 cell46.fastq.gz cell46.fastq.gz ERR765533 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765533/ERR765533_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell46 cell46 ERS662360 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell46 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell46 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell46 sequencing assay ERX708646 cell46.fastq.gz cell46.fastq.gz ERR765533 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765533/ERR765533_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell46 cell47 ERS662294 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell47 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell47 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell47 sequencing assay ERX708580 cell47.fastq.gz cell47.fastq.gz ERR765396 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765396/ERR765396_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell47 cell47 ERS662294 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell47 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell47 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell47 sequencing assay ERX708580 cell47.fastq.gz cell47.fastq.gz ERR765396 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765396/ERR765396_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell47 cell49 ERS662550 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell49 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell49 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell49 sequencing assay ERX708836 cell49.fastq.gz cell49.fastq.gz ERR765251 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765251/ERR765251_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell49 cell49 ERS662550 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell49 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell49 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell49 sequencing assay ERX708836 cell49.fastq.gz cell49.fastq.gz ERR765251 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765251/ERR765251_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell49 cell4S1 ERS662372 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S1 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S1 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S1 sequencing assay ERX708658 cell4S1.fastq.gz cell4S1.fastq.gz ERR765508 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765508/ERR765508_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S1 cell4S1 ERS662372 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S1 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S1 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S1 sequencing assay ERX708658 cell4S1.fastq.gz cell4S1.fastq.gz ERR765508 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765508/ERR765508_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S1 cell4S10 ERS662402 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S10 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S10 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S10 sequencing assay ERX708688 cell4S10.fastq.gz cell4S10.fastq.gz ERR765532 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765532/ERR765532_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S10 cell4S10 ERS662402 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S10 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S10 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S10 sequencing assay ERX708688 cell4S10.fastq.gz cell4S10.fastq.gz ERR765532 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765532/ERR765532_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S10 cell4S11 ERS662487 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S11 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S11 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S11 sequencing assay ERX708773 cell4S11.fastq.gz cell4S11.fastq.gz ERR765337 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765337/ERR765337_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S11 cell4S11 ERS662487 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S11 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S11 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S11 sequencing assay ERX708773 cell4S11.fastq.gz cell4S11.fastq.gz ERR765337 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765337/ERR765337_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S11 cell4S12 ERS662296 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S12 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S12 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S12 sequencing assay ERX708582 cell4S12.fastq.gz cell4S12.fastq.gz ERR765254 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765254/ERR765254_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S12 cell4S12 ERS662296 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S12 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S12 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S12 sequencing assay ERX708582 cell4S12.fastq.gz cell4S12.fastq.gz ERR765254 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765254/ERR765254_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S12 cell4S13 ERS662301 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S13 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S13 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S13 sequencing assay ERX708587 cell4S13.fastq.gz cell4S13.fastq.gz ERR765539 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765539/ERR765539_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S13 cell4S13 ERS662301 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S13 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S13 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S13 sequencing assay ERX708587 cell4S13.fastq.gz cell4S13.fastq.gz ERR765539 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765539/ERR765539_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S13 cell4S14 ERS662490 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S14 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S14 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S14 sequencing assay ERX708776 cell4S14.fastq.gz cell4S14.fastq.gz ERR765298 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765298/ERR765298_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S14 cell4S14 ERS662490 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S14 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S14 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S14 sequencing assay ERX708776 cell4S14.fastq.gz cell4S14.fastq.gz ERR765298 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765298/ERR765298_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S14 cell4S15 ERS662411 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S15 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S15 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S15 sequencing assay ERX708697 cell4S15.fastq.gz cell4S15.fastq.gz ERR765389 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765389/ERR765389_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S15 cell4S15 ERS662411 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S15 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S15 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S15 sequencing assay ERX708697 cell4S15.fastq.gz cell4S15.fastq.gz ERR765389 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765389/ERR765389_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S15 cell4S16 ERS662306 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S16 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S16 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S16 sequencing assay ERX708592 cell4S16.fastq.gz cell4S16.fastq.gz ERR765534 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765534/ERR765534_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S16 cell4S16 ERS662306 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S16 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S16 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S16 sequencing assay ERX708592 cell4S16.fastq.gz cell4S16.fastq.gz ERR765534 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765534/ERR765534_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S16 cell4S17 ERS662252 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S17 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S17 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S17 sequencing assay ERX708538 cell4S17.fastq.gz cell4S17.fastq.gz ERR765439 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765439/ERR765439_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S17 cell4S17 ERS662252 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S17 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S17 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S17 sequencing assay ERX708538 cell4S17.fastq.gz cell4S17.fastq.gz ERR765439 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765439/ERR765439_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S17 cell4S18 ERS662485 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S18 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S18 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S18 sequencing assay ERX708771 cell4S18.fastq.gz cell4S18.fastq.gz ERR765363 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765363/ERR765363_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S18 cell4S18 ERS662485 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S18 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S18 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S18 sequencing assay ERX708771 cell4S18.fastq.gz cell4S18.fastq.gz ERR765363 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765363/ERR765363_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S18 cell4S19 ERS662400 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S19 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S19 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S19 sequencing assay ERX708686 cell4S19.fastq.gz cell4S19.fastq.gz ERR765333 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765333/ERR765333_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S19 cell4S19 ERS662400 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S19 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S19 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S19 sequencing assay ERX708686 cell4S19.fastq.gz cell4S19.fastq.gz ERR765333 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765333/ERR765333_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S19 cell4S2 ERS662266 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S2 sequencing assay ERX708552 cell4S2.fastq.gz cell4S2.fastq.gz ERR765369 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765369/ERR765369_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S2 cell4S2 ERS662266 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S2 sequencing assay ERX708552 cell4S2.fastq.gz cell4S2.fastq.gz ERR765369 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765369/ERR765369_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S2 cell4S20 ERS662456 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S20 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S20 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S20 sequencing assay ERX708742 cell4S20.fastq.gz cell4S20.fastq.gz ERR765478 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765478/ERR765478_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S20 cell4S20 ERS662456 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S20 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S20 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S20 sequencing assay ERX708742 cell4S20.fastq.gz cell4S20.fastq.gz ERR765478 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765478/ERR765478_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S20 cell4S21 ERS662556 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S21 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S21 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S21 sequencing assay ERX708842 cell4S21.fastq.gz cell4S21.fastq.gz ERR765535 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765535/ERR765535_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S21 cell4S21 ERS662556 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S21 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S21 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S21 sequencing assay ERX708842 cell4S21.fastq.gz cell4S21.fastq.gz ERR765535 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765535/ERR765535_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S21 cell4S22 ERS662271 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S22 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S22 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S22 sequencing assay ERX708557 cell4S22.fastq.gz cell4S22.fastq.gz ERR765368 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765368/ERR765368_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S22 cell4S22 ERS662271 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S22 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S22 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S22 sequencing assay ERX708557 cell4S22.fastq.gz cell4S22.fastq.gz ERR765368 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765368/ERR765368_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S22 cell4S23 ERS662495 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S23 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S23 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S23 sequencing assay ERX708781 cell4S23.fastq.gz cell4S23.fastq.gz ERR765408 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765408/ERR765408_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S23 cell4S23 ERS662495 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S23 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S23 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S23 sequencing assay ERX708781 cell4S23.fastq.gz cell4S23.fastq.gz ERR765408 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765408/ERR765408_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S23 cell4S24 ERS662291 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S24 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S24 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S24 sequencing assay ERX708577 cell4S24.fastq.gz cell4S24.fastq.gz ERR765293 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765293/ERR765293_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S24 cell4S24 ERS662291 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S24 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S24 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S24 sequencing assay ERX708577 cell4S24.fastq.gz cell4S24.fastq.gz ERR765293 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765293/ERR765293_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S24 cell4S25 ERS662418 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S25 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S25 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S25 sequencing assay ERX708704 cell4S25.fastq.gz cell4S25.fastq.gz ERR765286 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765286/ERR765286_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S25 cell4S25 ERS662418 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S25 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S25 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S25 sequencing assay ERX708704 cell4S25.fastq.gz cell4S25.fastq.gz ERR765286 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765286/ERR765286_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S25 cell4S26 ERS662500 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S26 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S26 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S26 sequencing assay ERX708786 cell4S26.fastq.gz cell4S26.fastq.gz ERR765414 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765414/ERR765414_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S26 cell4S26 ERS662500 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S26 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S26 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S26 sequencing assay ERX708786 cell4S26.fastq.gz cell4S26.fastq.gz ERR765414 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765414/ERR765414_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S26 cell4S27 ERS662254 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S27 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S27 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S27 sequencing assay ERX708540 cell4S27.fastq.gz cell4S27.fastq.gz ERR765397 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765397/ERR765397_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S27 cell4S27 ERS662254 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S27 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S27 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S27 sequencing assay ERX708540 cell4S27.fastq.gz cell4S27.fastq.gz ERR765397 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765397/ERR765397_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S27 cell4S28 ERS662389 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S28 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S28 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S28 sequencing assay ERX708675 cell4S28.fastq.gz cell4S28.fastq.gz ERR765429 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765429/ERR765429_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S28 cell4S28 ERS662389 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S28 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S28 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S28 sequencing assay ERX708675 cell4S28.fastq.gz cell4S28.fastq.gz ERR765429 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765429/ERR765429_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S28 cell4S29 ERS662453 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S29 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S29 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S29 sequencing assay ERX708739 cell4S29.fastq.gz cell4S29.fastq.gz ERR765459 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765459/ERR765459_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S29 cell4S29 ERS662453 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S29 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S29 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S29 sequencing assay ERX708739 cell4S29.fastq.gz cell4S29.fastq.gz ERR765459 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765459/ERR765459_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S29 cell4S3 ERS662310 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S3 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S3 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S3 sequencing assay ERX708596 cell4S3.fastq.gz cell4S3.fastq.gz ERR765257 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765257/ERR765257_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S3 cell4S3 ERS662310 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S3 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S3 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S3 sequencing assay ERX708596 cell4S3.fastq.gz cell4S3.fastq.gz ERR765257 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765257/ERR765257_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S3 cell4S30 ERS662369 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S30 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S30 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S30 sequencing assay ERX708655 cell4S30.fastq.gz cell4S30.fastq.gz ERR765409 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765409/ERR765409_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S30 cell4S30 ERS662369 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S30 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S30 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S30 sequencing assay ERX708655 cell4S30.fastq.gz cell4S30.fastq.gz ERR765409 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765409/ERR765409_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S30 cell4S31 ERS662410 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S31 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S31 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S31 sequencing assay ERX708696 cell4S31.fastq.gz cell4S31.fastq.gz ERR765344 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765344/ERR765344_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S31 cell4S31 ERS662410 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S31 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S31 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S31 sequencing assay ERX708696 cell4S31.fastq.gz cell4S31.fastq.gz ERR765344 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765344/ERR765344_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S31 cell4S32 ERS662475 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S32 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S32 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S32 sequencing assay ERX708761 cell4S32.fastq.gz cell4S32.fastq.gz ERR765570 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765570/ERR765570_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S32 cell4S32 ERS662475 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S32 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S32 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S32 sequencing assay ERX708761 cell4S32.fastq.gz cell4S32.fastq.gz ERR765570 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765570/ERR765570_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S32 cell4S33 ERS662439 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S33 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S33 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S33 sequencing assay ERX708725 cell4S33.fastq.gz cell4S33.fastq.gz ERR765296 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765296/ERR765296_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S33 cell4S33 ERS662439 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S33 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S33 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S33 sequencing assay ERX708725 cell4S33.fastq.gz cell4S33.fastq.gz ERR765296 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765296/ERR765296_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S33 cell4S34 ERS662277 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S34 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S34 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S34 sequencing assay ERX708563 cell4S34.fastq.gz cell4S34.fastq.gz ERR765285 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765285/ERR765285_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S34 cell4S34 ERS662277 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S34 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S34 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S34 sequencing assay ERX708563 cell4S34.fastq.gz cell4S34.fastq.gz ERR765285 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765285/ERR765285_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S34 cell4S35 ERS662247 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S35 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S35 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S35 sequencing assay ERX708533 cell4S35.fastq.gz cell4S35.fastq.gz ERR765454 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765454/ERR765454_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S35 cell4S35 ERS662247 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S35 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S35 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S35 sequencing assay ERX708533 cell4S35.fastq.gz cell4S35.fastq.gz ERR765454 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765454/ERR765454_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S35 cell4S36 ERS662477 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S36 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S36 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S36 sequencing assay ERX708763 cell4S36.fastq.gz cell4S36.fastq.gz ERR765287 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765287/ERR765287_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S36 cell4S36 ERS662477 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S36 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S36 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S36 sequencing assay ERX708763 cell4S36.fastq.gz cell4S36.fastq.gz ERR765287 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765287/ERR765287_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S36 cell4S37 ERS662412 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S37 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S37 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S37 sequencing assay ERX708698 cell4S37.fastq.gz cell4S37.fastq.gz ERR765557 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765557/ERR765557_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S37 cell4S37 ERS662412 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S37 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S37 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S37 sequencing assay ERX708698 cell4S37.fastq.gz cell4S37.fastq.gz ERR765557 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765557/ERR765557_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S37 cell4S38 ERS662377 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S38 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S38 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S38 sequencing assay ERX708663 cell4S38.fastq.gz cell4S38.fastq.gz ERR765338 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765338/ERR765338_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S38 cell4S38 ERS662377 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S38 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S38 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S38 sequencing assay ERX708663 cell4S38.fastq.gz cell4S38.fastq.gz ERR765338 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765338/ERR765338_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S38 cell4S39 ERS662234 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S39 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S39 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S39 sequencing assay ERX708520 cell4S39.fastq.gz cell4S39.fastq.gz ERR765276 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765276/ERR765276_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S39 cell4S39 ERS662234 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S39 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S39 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S39 sequencing assay ERX708520 cell4S39.fastq.gz cell4S39.fastq.gz ERR765276 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765276/ERR765276_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S39 cell4S4 ERS662398 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S4 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S4 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S4 sequencing assay ERX708684 cell4S4.fastq.gz cell4S4.fastq.gz ERR765241 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765241/ERR765241_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S4 cell4S4 ERS662398 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S4 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S4 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S4 sequencing assay ERX708684 cell4S4.fastq.gz cell4S4.fastq.gz ERR765241 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765241/ERR765241_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S4 cell4S40 ERS662351 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S40 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S40 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S40 sequencing assay ERX708637 cell4S40.fastq.gz cell4S40.fastq.gz ERR765458 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765458/ERR765458_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S40 cell4S40 ERS662351 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S40 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S40 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S40 sequencing assay ERX708637 cell4S40.fastq.gz cell4S40.fastq.gz ERR765458 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765458/ERR765458_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S40 cell4S41 ERS662530 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S41 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S41 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S41 sequencing assay ERX708816 cell4S41.fastq.gz cell4S41.fastq.gz ERR765460 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765460/ERR765460_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S41 cell4S41 ERS662530 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S41 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S41 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S41 sequencing assay ERX708816 cell4S41.fastq.gz cell4S41.fastq.gz ERR765460 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765460/ERR765460_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S41 cell4S42 ERS662435 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S42 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S42 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S42 sequencing assay ERX708721 cell4S42.fastq.gz cell4S42.fastq.gz ERR765475 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765475/ERR765475_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S42 cell4S42 ERS662435 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S42 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S42 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S42 sequencing assay ERX708721 cell4S42.fastq.gz cell4S42.fastq.gz ERR765475 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765475/ERR765475_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S42 cell4S43 ERS662488 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S43 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S43 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S43 sequencing assay ERX708774 cell4S43.fastq.gz cell4S43.fastq.gz ERR765437 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765437/ERR765437_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S43 cell4S43 ERS662488 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S43 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S43 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S43 sequencing assay ERX708774 cell4S43.fastq.gz cell4S43.fastq.gz ERR765437 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765437/ERR765437_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S43 cell4S44 ERS662405 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S44 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S44 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S44 sequencing assay ERX708691 cell4S44.fastq.gz cell4S44.fastq.gz ERR765300 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765300/ERR765300_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S44 cell4S44 ERS662405 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S44 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S44 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S44 sequencing assay ERX708691 cell4S44.fastq.gz cell4S44.fastq.gz ERR765300 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765300/ERR765300_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S44 cell4S45 ERS662326 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S45 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S45 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S45 sequencing assay ERX708612 cell4S45.fastq.gz cell4S45.fastq.gz ERR765510 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765510/ERR765510_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S45 cell4S45 ERS662326 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S45 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S45 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S45 sequencing assay ERX708612 cell4S45.fastq.gz cell4S45.fastq.gz ERR765510 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765510/ERR765510_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S45 cell4S46 ERS662232 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S46 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S46 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S46 sequencing assay ERX708518 cell4S46.fastq.gz cell4S46.fastq.gz ERR765361 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765361/ERR765361_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S46 cell4S46 ERS662232 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S46 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S46 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S46 sequencing assay ERX708518 cell4S46.fastq.gz cell4S46.fastq.gz ERR765361 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765361/ERR765361_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S46 cell4S47 ERS662347 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S47 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S47 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S47 sequencing assay ERX708633 cell4S47.fastq.gz cell4S47.fastq.gz ERR765402 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765402/ERR765402_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S47 cell4S47 ERS662347 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S47 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S47 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S47 sequencing assay ERX708633 cell4S47.fastq.gz cell4S47.fastq.gz ERR765402 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765402/ERR765402_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S47 cell4S48 ERS662425 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S48 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S48 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S48 sequencing assay ERX708711 cell4S48.fastq.gz cell4S48.fastq.gz ERR765386 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765386/ERR765386_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S48 cell4S48 ERS662425 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) stanford4 OK cell4S48 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S48 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S48 sequencing assay ERX708711 cell4S48.fastq.gz cell4S48.fastq.gz ERR765386 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765386/ERR765386_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Tspan8(pos) cell4S48 cell4S5 ERS662433 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S5 sequencing assay ERX708719 cell4S5.fastq.gz cell4S5.fastq.gz ERR765290 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765290/ERR765290_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S5 cell4S5 ERS662433 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S5 sequencing assay ERX708719 cell4S5.fastq.gz cell4S5.fastq.gz ERR765290 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765290/ERR765290_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S5 cell4S6 ERS662531 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S6 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S6 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S6 sequencing assay ERX708817 cell4S6.fastq.gz cell4S6.fastq.gz ERR765385 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765385/ERR765385_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S6 cell4S6 ERS662531 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S6 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S6 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S6 sequencing assay ERX708817 cell4S6.fastq.gz cell4S6.fastq.gz ERR765385 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765385/ERR765385_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S6 cell4S7 ERS662343 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S7 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S7 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S7 sequencing assay ERX708629 cell4S7.fastq.gz cell4S7.fastq.gz ERR765319 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765319/ERR765319_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S7 cell4S7 ERS662343 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S7 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S7 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S7 sequencing assay ERX708629 cell4S7.fastq.gz cell4S7.fastq.gz ERR765319 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765319/ERR765319_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S7 cell4S8 ERS662422 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S8 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S8 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S8 sequencing assay ERX708708 cell4S8.fastq.gz cell4S8.fastq.gz ERR765252 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765252/ERR765252_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S8 cell4S8 ERS662422 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S8 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S8 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S8 sequencing assay ERX708708 cell4S8.fastq.gz cell4S8.fastq.gz ERR765252 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765252/ERR765252_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S8 cell4S9 ERS662295 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S9 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S9 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S9 sequencing assay ERX708581 cell4S9.fastq.gz cell4S9.fastq.gz ERR765559 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765559/ERR765559_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S9 cell4S9 ERS662295 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford4 OK cell4S9 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell4S9 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell4S9 sequencing assay ERX708581 cell4S9.fastq.gz cell4S9.fastq.gz ERR765559 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765559/ERR765559_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell4S9 cell5 ERS662513 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5 sequencing assay ERX708799 cell5.fastq.gz cell5.fastq.gz ERR765556 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765556/ERR765556_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell5 cell5 ERS662513 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5 sequencing assay ERX708799 cell5.fastq.gz cell5.fastq.gz ERR765556 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765556/ERR765556_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell5 cell51 ERS662236 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell51 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell51 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell51 sequencing assay ERX708522 cell51.fastq.gz cell51.fastq.gz ERR765449 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765449/ERR765449_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell51 cell51 ERS662236 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell51 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell51 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell51 sequencing assay ERX708522 cell51.fastq.gz cell51.fastq.gz ERR765449 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765449/ERR765449_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell51 cell56 ERS662231 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell56 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell56 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell56 sequencing assay ERX708517 cell56.fastq.gz cell56.fastq.gz ERR765263 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765263/ERR765263_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell56 cell56 ERS662231 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell56 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell56 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell56 sequencing assay ERX708517 cell56.fastq.gz cell56.fastq.gz ERR765263 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765263/ERR765263_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell56 cell57 ERS662323 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell57 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell57 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell57 sequencing assay ERX708609 cell57.fastq.gz cell57.fastq.gz ERR765247 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765247/ERR765247_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell57 cell57 ERS662323 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell57 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell57 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell57 sequencing assay ERX708609 cell57.fastq.gz cell57.fastq.gz ERR765247 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765247/ERR765247_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell57 cell59 ERS662511 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell59 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell59 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell59 sequencing assay ERX708797 cell59.fastq.gz cell59.fastq.gz ERR765243 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765243/ERR765243_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell59 cell59 ERS662511 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell59 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell59 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell59 sequencing assay ERX708797 cell59.fastq.gz cell59.fastq.gz ERR765243 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765243/ERR765243_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell59 cell5S1 ERS662362 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S1 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S1 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S1 sequencing assay ERX708648 cell5S1.fastq.gz cell5S1.fastq.gz ERR765283 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765283/ERR765283_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S1 cell5S1 ERS662362 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S1 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S1 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S1 sequencing assay ERX708648 cell5S1.fastq.gz cell5S1.fastq.gz ERR765283 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765283/ERR765283_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S1 cell5S10 ERS662262 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S10 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S10 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S10 sequencing assay ERX708548 cell5S10.fastq.gz cell5S10.fastq.gz ERR765378 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765378/ERR765378_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S10 cell5S10 ERS662262 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S10 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S10 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S10 sequencing assay ERX708548 cell5S10.fastq.gz cell5S10.fastq.gz ERR765378 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765378/ERR765378_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S10 cell5S11 ERS662356 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S11 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S11 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S11 sequencing assay ERX708642 cell5S11.fastq.gz cell5S11.fastq.gz ERR765246 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765246/ERR765246_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S11 cell5S11 ERS662356 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S11 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S11 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S11 sequencing assay ERX708642 cell5S11.fastq.gz cell5S11.fastq.gz ERR765246 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765246/ERR765246_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S11 cell5S12 ERS662464 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S12 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S12 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S12 sequencing assay ERX708750 cell5S12.fastq.gz cell5S12.fastq.gz ERR765576 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765576/ERR765576_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S12 cell5S12 ERS662464 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S12 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S12 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S12 sequencing assay ERX708750 cell5S12.fastq.gz cell5S12.fastq.gz ERR765576 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765576/ERR765576_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S12 cell5S13 ERS662441 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S13 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S13 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S13 sequencing assay ERX708727 cell5S13.fastq.gz cell5S13.fastq.gz ERR765356 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765356/ERR765356_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S13 cell5S13 ERS662441 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S13 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S13 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S13 sequencing assay ERX708727 cell5S13.fastq.gz cell5S13.fastq.gz ERR765356 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765356/ERR765356_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S13 cell5S14 ERS662269 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S14 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S14 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S14 sequencing assay ERX708555 cell5S14.fastq.gz cell5S14.fastq.gz ERR765564 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765564/ERR765564_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S14 cell5S14 ERS662269 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S14 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S14 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S14 sequencing assay ERX708555 cell5S14.fastq.gz cell5S14.fastq.gz ERR765564 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765564/ERR765564_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S14 cell5S15 ERS662224 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S15 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S15 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S15 sequencing assay ERX708510 cell5S15.fastq.gz cell5S15.fastq.gz ERR765237 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765237/ERR765237_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S15 cell5S15 ERS662224 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S15 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S15 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S15 sequencing assay ERX708510 cell5S15.fastq.gz cell5S15.fastq.gz ERR765237 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765237/ERR765237_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S15 cell5S16 ERS662557 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S16 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S16 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S16 sequencing assay ERX708843 cell5S16.fastq.gz cell5S16.fastq.gz ERR765499 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765499/ERR765499_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S16 cell5S16 ERS662557 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S16 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S16 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S16 sequencing assay ERX708843 cell5S16.fastq.gz cell5S16.fastq.gz ERR765499 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765499/ERR765499_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S16 cell5S17 ERS662466 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S17 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S17 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S17 sequencing assay ERX708752 cell5S17.fastq.gz cell5S17.fastq.gz ERR765464 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765464/ERR765464_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S17 cell5S17 ERS662466 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S17 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S17 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S17 sequencing assay ERX708752 cell5S17.fastq.gz cell5S17.fastq.gz ERR765464 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765464/ERR765464_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S17 cell5S18 ERS662387 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S18 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S18 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S18 sequencing assay ERX708673 cell5S18.fastq.gz cell5S18.fastq.gz ERR765288 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765288/ERR765288_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S18 cell5S18 ERS662387 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S18 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S18 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S18 sequencing assay ERX708673 cell5S18.fastq.gz cell5S18.fastq.gz ERR765288 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765288/ERR765288_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S18 cell5S19 ERS662514 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S19 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S19 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S19 sequencing assay ERX708800 cell5S19.fastq.gz cell5S19.fastq.gz ERR765341 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765341/ERR765341_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S19 cell5S19 ERS662514 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S19 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S19 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S19 sequencing assay ERX708800 cell5S19.fastq.gz cell5S19.fastq.gz ERR765341 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765341/ERR765341_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S19 cell5S2 ERS662553 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S2 sequencing assay ERX708839 cell5S2.fastq.gz cell5S2.fastq.gz ERR765311 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765311/ERR765311_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S2 cell5S2 ERS662553 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S2 sequencing assay ERX708839 cell5S2.fastq.gz cell5S2.fastq.gz ERR765311 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765311/ERR765311_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S2 cell5S20 ERS662382 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S20 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S20 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S20 sequencing assay ERX708668 cell5S20.fastq.gz cell5S20.fastq.gz ERR765245 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765245/ERR765245_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S20 cell5S20 ERS662382 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S20 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S20 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S20 sequencing assay ERX708668 cell5S20.fastq.gz cell5S20.fastq.gz ERR765245 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765245/ERR765245_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S20 cell5S21 ERS662274 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S21 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S21 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S21 sequencing assay ERX708560 cell5S21.fastq.gz cell5S21.fastq.gz ERR765502 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765502/ERR765502_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S21 cell5S21 ERS662274 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S21 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S21 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S21 sequencing assay ERX708560 cell5S21.fastq.gz cell5S21.fastq.gz ERR765502 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765502/ERR765502_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S21 cell5S22 ERS662527 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S22 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S22 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S22 sequencing assay ERX708813 cell5S22.fastq.gz cell5S22.fastq.gz ERR765560 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765560/ERR765560_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S22 cell5S22 ERS662527 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S22 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S22 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S22 sequencing assay ERX708813 cell5S22.fastq.gz cell5S22.fastq.gz ERR765560 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765560/ERR765560_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S22 cell5S23 ERS662375 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S23 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S23 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S23 sequencing assay ERX708661 cell5S23.fastq.gz cell5S23.fastq.gz ERR765346 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765346/ERR765346_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S23 cell5S23 ERS662375 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S23 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S23 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S23 sequencing assay ERX708661 cell5S23.fastq.gz cell5S23.fastq.gz ERR765346 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765346/ERR765346_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S23 cell5S24 ERS662230 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S24 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S24 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S24 sequencing assay ERX708516 cell5S24.fastq.gz cell5S24.fastq.gz ERR765351 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765351/ERR765351_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S24 cell5S24 ERS662230 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S24 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S24 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S24 sequencing assay ERX708516 cell5S24.fastq.gz cell5S24.fastq.gz ERR765351 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765351/ERR765351_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S24 cell5S25 ERS662533 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S25 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S25 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S25 sequencing assay ERX708819 cell5S25.fastq.gz cell5S25.fastq.gz ERR765540 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765540/ERR765540_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S25 cell5S25 ERS662533 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S25 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S25 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S25 sequencing assay ERX708819 cell5S25.fastq.gz cell5S25.fastq.gz ERR765540 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765540/ERR765540_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S25 cell5S26 ERS662416 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S26 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S26 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S26 sequencing assay ERX708702 cell5S26.fastq.gz cell5S26.fastq.gz ERR765250 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765250/ERR765250_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S26 cell5S26 ERS662416 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S26 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S26 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S26 sequencing assay ERX708702 cell5S26.fastq.gz cell5S26.fastq.gz ERR765250 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765250/ERR765250_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S26 cell5S27 ERS662502 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S27 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S27 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S27 sequencing assay ERX708788 cell5S27.fastq.gz cell5S27.fastq.gz ERR765418 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765418/ERR765418_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S27 cell5S27 ERS662502 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S27 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S27 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S27 sequencing assay ERX708788 cell5S27.fastq.gz cell5S27.fastq.gz ERR765418 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765418/ERR765418_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S27 cell5S28 ERS662225 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S28 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S28 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S28 sequencing assay ERX708511 cell5S28.fastq.gz cell5S28.fastq.gz ERR765364 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765364/ERR765364_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S28 cell5S28 ERS662225 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S28 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S28 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S28 sequencing assay ERX708511 cell5S28.fastq.gz cell5S28.fastq.gz ERR765364 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765364/ERR765364_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S28 cell5S29 ERS662501 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S29 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S29 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S29 sequencing assay ERX708787 cell5S29.fastq.gz cell5S29.fastq.gz ERR765384 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765384/ERR765384_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S29 cell5S29 ERS662501 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S29 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S29 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S29 sequencing assay ERX708787 cell5S29.fastq.gz cell5S29.fastq.gz ERR765384 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765384/ERR765384_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S29 cell5S3 ERS662300 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S3 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S3 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S3 sequencing assay ERX708586 cell5S3.fastq.gz cell5S3.fastq.gz ERR765526 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765526/ERR765526_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S3 cell5S3 ERS662300 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S3 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S3 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S3 sequencing assay ERX708586 cell5S3.fastq.gz cell5S3.fastq.gz ERR765526 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765526/ERR765526_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S3 cell5S30 ERS662370 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S30 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S30 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S30 sequencing assay ERX708656 cell5S30.fastq.gz cell5S30.fastq.gz ERR765413 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765413/ERR765413_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S30 cell5S30 ERS662370 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S30 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S30 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S30 sequencing assay ERX708656 cell5S30.fastq.gz cell5S30.fastq.gz ERR765413 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765413/ERR765413_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S30 cell5S31 ERS662249 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S31 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S31 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S31 sequencing assay ERX708535 cell5S31.fastq.gz cell5S31.fastq.gz ERR765496 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765496/ERR765496_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S31 cell5S31 ERS662249 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S31 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S31 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S31 sequencing assay ERX708535 cell5S31.fastq.gz cell5S31.fastq.gz ERR765496 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765496/ERR765496_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S31 cell5S32 ERS662499 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S32 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S32 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S32 sequencing assay ERX708785 cell5S32.fastq.gz cell5S32.fastq.gz ERR765433 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765433/ERR765433_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S32 cell5S32 ERS662499 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S32 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S32 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S32 sequencing assay ERX708785 cell5S32.fastq.gz cell5S32.fastq.gz ERR765433 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765433/ERR765433_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S32 cell5S33 ERS662503 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S33 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S33 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S33 sequencing assay ERX708789 cell5S33.fastq.gz cell5S33.fastq.gz ERR765566 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765566/ERR765566_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S33 cell5S33 ERS662503 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S33 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S33 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S33 sequencing assay ERX708789 cell5S33.fastq.gz cell5S33.fastq.gz ERR765566 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765566/ERR765566_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S33 cell5S34 ERS662460 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S34 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S34 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S34 sequencing assay ERX708746 cell5S34.fastq.gz cell5S34.fastq.gz ERR765507 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765507/ERR765507_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S34 cell5S34 ERS662460 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S34 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S34 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S34 sequencing assay ERX708746 cell5S34.fastq.gz cell5S34.fastq.gz ERR765507 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765507/ERR765507_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S34 cell5S35 ERS662333 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S35 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S35 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S35 sequencing assay ERX708619 cell5S35.fastq.gz cell5S35.fastq.gz ERR765523 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765523/ERR765523_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S35 cell5S35 ERS662333 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S35 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S35 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S35 sequencing assay ERX708619 cell5S35.fastq.gz cell5S35.fastq.gz ERR765523 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765523/ERR765523_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S35 cell5S36 ERS662263 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S36 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S36 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S36 sequencing assay ERX708549 cell5S36.fastq.gz cell5S36.fastq.gz ERR765326 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765326/ERR765326_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S36 cell5S36 ERS662263 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S36 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S36 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S36 sequencing assay ERX708549 cell5S36.fastq.gz cell5S36.fastq.gz ERR765326 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765326/ERR765326_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S36 cell5S37 ERS662471 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S37 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S37 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S37 sequencing assay ERX708757 cell5S37.fastq.gz cell5S37.fastq.gz ERR765277 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765277/ERR765277_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S37 cell5S37 ERS662471 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S37 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S37 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S37 sequencing assay ERX708757 cell5S37.fastq.gz cell5S37.fastq.gz ERR765277 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765277/ERR765277_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S37 cell5S38 ERS662528 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S38 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S38 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S38 sequencing assay ERX708814 cell5S38.fastq.gz cell5S38.fastq.gz ERR765367 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765367/ERR765367_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S38 cell5S38 ERS662528 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S38 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S38 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S38 sequencing assay ERX708814 cell5S38.fastq.gz cell5S38.fastq.gz ERR765367 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765367/ERR765367_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S38 cell5S39 ERS662492 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S39 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S39 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S39 sequencing assay ERX708778 cell5S39.fastq.gz cell5S39.fastq.gz ERR765236 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765236/ERR765236_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S39 cell5S39 ERS662492 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S39 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S39 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S39 sequencing assay ERX708778 cell5S39.fastq.gz cell5S39.fastq.gz ERR765236 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765236/ERR765236_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S39 cell5S4 ERS662307 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S4 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S4 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S4 sequencing assay ERX708593 cell5S4.fastq.gz cell5S4.fastq.gz ERR765360 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765360/ERR765360_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S4 cell5S4 ERS662307 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S4 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S4 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S4 sequencing assay ERX708593 cell5S4.fastq.gz cell5S4.fastq.gz ERR765360 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765360/ERR765360_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S4 cell5S40 ERS662424 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S40 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S40 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S40 sequencing assay ERX708710 cell5S40.fastq.gz cell5S40.fastq.gz ERR765390 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765390/ERR765390_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S40 cell5S40 ERS662424 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S40 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S40 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S40 sequencing assay ERX708710 cell5S40.fastq.gz cell5S40.fastq.gz ERR765390 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765390/ERR765390_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S40 cell5S41 ERS662512 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S41 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S41 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S41 sequencing assay ERX708798 cell5S41.fastq.gz cell5S41.fastq.gz ERR765322 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765322/ERR765322_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S41 cell5S41 ERS662512 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S41 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S41 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S41 sequencing assay ERX708798 cell5S41.fastq.gz cell5S41.fastq.gz ERR765322 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765322/ERR765322_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S41 cell5S42 ERS662344 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S42 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S42 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S42 sequencing assay ERX708630 cell5S42.fastq.gz cell5S42.fastq.gz ERR765352 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765352/ERR765352_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S42 cell5S42 ERS662344 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S42 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S42 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S42 sequencing assay ERX708630 cell5S42.fastq.gz cell5S42.fastq.gz ERR765352 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765352/ERR765352_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S42 cell5S43 ERS662302 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S43 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S43 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S43 sequencing assay ERX708588 cell5S43.fastq.gz cell5S43.fastq.gz ERR765457 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765457/ERR765457_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S43 cell5S43 ERS662302 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S43 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S43 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S43 sequencing assay ERX708588 cell5S43.fastq.gz cell5S43.fastq.gz ERR765457 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765457/ERR765457_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S43 cell5S44 ERS662482 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S44 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S44 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S44 sequencing assay ERX708768 cell5S44.fastq.gz cell5S44.fastq.gz ERR765377 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765377/ERR765377_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S44 cell5S44 ERS662482 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S44 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S44 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S44 sequencing assay ERX708768 cell5S44.fastq.gz cell5S44.fastq.gz ERR765377 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765377/ERR765377_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S44 cell5S45 ERS662428 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S45 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S45 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S45 sequencing assay ERX708714 cell5S45.fastq.gz cell5S45.fastq.gz ERR765538 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765538/ERR765538_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S45 cell5S45 ERS662428 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S45 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S45 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S45 sequencing assay ERX708714 cell5S45.fastq.gz cell5S45.fastq.gz ERR765538 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765538/ERR765538_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S45 cell5S46 ERS662316 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S46 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S46 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S46 sequencing assay ERX708602 cell5S46.fastq.gz cell5S46.fastq.gz ERR765303 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765303/ERR765303_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S46 cell5S46 ERS662316 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S46 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S46 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S46 sequencing assay ERX708602 cell5S46.fastq.gz cell5S46.fastq.gz ERR765303 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765303/ERR765303_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S46 cell5S47 ERS662335 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S47 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S47 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S47 sequencing assay ERX708621 cell5S47.fastq.gz cell5S47.fastq.gz ERR765416 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765416/ERR765416_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S47 cell5S47 ERS662335 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S47 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S47 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S47 sequencing assay ERX708621 cell5S47.fastq.gz cell5S47.fastq.gz ERR765416 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765416/ERR765416_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S47 cell5S48 ERS662239 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S48 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S48 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S48 sequencing assay ERX708525 cell5S48.fastq.gz cell5S48.fastq.gz ERR765394 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765394/ERR765394_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S48 cell5S48 ERS662239 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S48 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S48 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S48 sequencing assay ERX708525 cell5S48.fastq.gz cell5S48.fastq.gz ERR765394 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765394/ERR765394_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S48 cell5S5 ERS662461 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S5 sequencing assay ERX708747 cell5S5.fastq.gz cell5S5.fastq.gz ERR765424 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765424/ERR765424_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S5 cell5S5 ERS662461 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S5 sequencing assay ERX708747 cell5S5.fastq.gz cell5S5.fastq.gz ERR765424 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765424/ERR765424_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S5 cell5S6 ERS662334 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S6 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S6 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S6 sequencing assay ERX708620 cell5S6.fastq.gz cell5S6.fastq.gz ERR765381 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765381/ERR765381_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S6 cell5S6 ERS662334 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S6 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S6 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S6 sequencing assay ERX708620 cell5S6.fastq.gz cell5S6.fastq.gz ERR765381 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765381/ERR765381_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S6 cell5S7 ERS662245 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S7 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S7 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S7 sequencing assay ERX708531 cell5S7.fastq.gz cell5S7.fastq.gz ERR765558 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765558/ERR765558_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S7 cell5S7 ERS662245 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S7 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S7 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S7 sequencing assay ERX708531 cell5S7.fastq.gz cell5S7.fastq.gz ERR765558 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765558/ERR765558_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S7 cell5S8 ERS662480 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S8 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S8 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S8 sequencing assay ERX708766 cell5S8.fastq.gz cell5S8.fastq.gz ERR765530 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765530/ERR765530_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S8 cell5S8 ERS662480 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S8 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S8 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S8 sequencing assay ERX708766 cell5S8.fastq.gz cell5S8.fastq.gz ERR765530 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765530/ERR765530_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S8 cell5S9 ERS662431 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S9 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S9 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S9 sequencing assay ERX708717 cell5S9.fastq.gz cell5S9.fastq.gz ERR765469 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765469/ERR765469_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S9 cell5S9 ERS662431 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) stanford5 OK cell5S9 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell5S9 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell5S9 sequencing assay ERX708717 cell5S9.fastq.gz cell5S9.fastq.gz ERR765469 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765469/ERR765469_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(low) cell5S9 cell60 ERS662539 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell60 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell60 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell60 sequencing assay ERX708825 cell60.fastq.gz cell60.fastq.gz ERR765567 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765567/ERR765567_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell60 cell60 ERS662539 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell60 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell60 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell60 sequencing assay ERX708825 cell60.fastq.gz cell60.fastq.gz ERR765567 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765567/ERR765567_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell60 cell63 ERS662241 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell63 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell63 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell63 sequencing assay ERX708527 cell63.fastq.gz cell63.fastq.gz ERR765531 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765531/ERR765531_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell63 cell63 ERS662241 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell63 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell63 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell63 sequencing assay ERX708527 cell63.fastq.gz cell63.fastq.gz ERR765531 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765531/ERR765531_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell63 cell65 ERS662391 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell65 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell65 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell65 sequencing assay ERX708677 cell65.fastq.gz cell65.fastq.gz ERR765552 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765552/ERR765552_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell65 cell65 ERS662391 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell65 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell65 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell65 sequencing assay ERX708677 cell65.fastq.gz cell65.fastq.gz ERR765552 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765552/ERR765552_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell65 cell68 ERS662397 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell68 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell68 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell68 sequencing assay ERX708683 cell68.fastq.gz cell68.fastq.gz ERR765249 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765249/ERR765249_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell68 cell68 ERS662397 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell68 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell68 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell68 sequencing assay ERX708683 cell68.fastq.gz cell68.fastq.gz ERR765249 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765249/ERR765249_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell68 cell6S1 ERS662324 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S1 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S1 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S1 sequencing assay ERX708610 cell6S1.fastq.gz cell6S1.fastq.gz ERR765563 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765563/ERR765563_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S1 cell6S1 ERS662324 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S1 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S1 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S1 sequencing assay ERX708610 cell6S1.fastq.gz cell6S1.fastq.gz ERR765563 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765563/ERR765563_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S1 cell6S10 ERS662563 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S10 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S10 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S10 sequencing assay ERX708849 cell6S10.fastq.gz cell6S10.fastq.gz ERR765420 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765420/ERR765420_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S10 cell6S10 ERS662563 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S10 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S10 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S10 sequencing assay ERX708849 cell6S10.fastq.gz cell6S10.fastq.gz ERR765420 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765420/ERR765420_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S10 cell6S11 ERS662308 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S11 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S11 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S11 sequencing assay ERX708594 cell6S11.fastq.gz cell6S11.fastq.gz ERR765412 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765412/ERR765412_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S11 cell6S11 ERS662308 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S11 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S11 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S11 sequencing assay ERX708594 cell6S11.fastq.gz cell6S11.fastq.gz ERR765412 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765412/ERR765412_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S11 cell6S12 ERS662246 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S12 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S12 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S12 sequencing assay ERX708532 cell6S12.fastq.gz cell6S12.fastq.gz ERR765545 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765545/ERR765545_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S12 cell6S12 ERS662246 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S12 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S12 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S12 sequencing assay ERX708532 cell6S12.fastq.gz cell6S12.fastq.gz ERR765545 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765545/ERR765545_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S12 cell6S13 ERS662268 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S13 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S13 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S13 sequencing assay ERX708554 cell6S13.fastq.gz cell6S13.fastq.gz ERR765323 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765323/ERR765323_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S13 cell6S13 ERS662268 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S13 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S13 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S13 sequencing assay ERX708554 cell6S13.fastq.gz cell6S13.fastq.gz ERR765323 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765323/ERR765323_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S13 cell6S14 ERS662371 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S14 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S14 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S14 sequencing assay ERX708657 cell6S14.fastq.gz cell6S14.fastq.gz ERR765463 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765463/ERR765463_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S14 cell6S14 ERS662371 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S14 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S14 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S14 sequencing assay ERX708657 cell6S14.fastq.gz cell6S14.fastq.gz ERR765463 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765463/ERR765463_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S14 cell6S15 ERS662470 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S15 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S15 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S15 sequencing assay ERX708756 cell6S15.fastq.gz cell6S15.fastq.gz ERR765489 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765489/ERR765489_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S15 cell6S15 ERS662470 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S15 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S15 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S15 sequencing assay ERX708756 cell6S15.fastq.gz cell6S15.fastq.gz ERR765489 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765489/ERR765489_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S15 cell6S2 ERS662233 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S2 sequencing assay ERX708519 cell6S2.fastq.gz cell6S2.fastq.gz ERR765306 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765306/ERR765306_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S2 cell6S2 ERS662233 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S2 sequencing assay ERX708519 cell6S2.fastq.gz cell6S2.fastq.gz ERR765306 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765306/ERR765306_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S2 cell6S25 ERS662332 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S25 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S25 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S25 sequencing assay ERX708618 cell6S25.fastq.gz cell6S25.fastq.gz ERR765407 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765407/ERR765407_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S25 cell6S25 ERS662332 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S25 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S25 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S25 sequencing assay ERX708618 cell6S25.fastq.gz cell6S25.fastq.gz ERR765407 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765407/ERR765407_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S25 cell6S26 ERS662454 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S26 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S26 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S26 sequencing assay ERX708740 cell6S26.fastq.gz cell6S26.fastq.gz ERR765480 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765480/ERR765480_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S26 cell6S26 ERS662454 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S26 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S26 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S26 sequencing assay ERX708740 cell6S26.fastq.gz cell6S26.fastq.gz ERR765480 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765480/ERR765480_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S26 cell6S27 ERS662497 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S27 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S27 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S27 sequencing assay ERX708783 cell6S27.fastq.gz cell6S27.fastq.gz ERR765500 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765500/ERR765500_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S27 cell6S27 ERS662497 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S27 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S27 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S27 sequencing assay ERX708783 cell6S27.fastq.gz cell6S27.fastq.gz ERR765500 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765500/ERR765500_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S27 cell6S28 ERS662250 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S28 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S28 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S28 sequencing assay ERX708536 cell6S28.fastq.gz cell6S28.fastq.gz ERR765307 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765307/ERR765307_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S28 cell6S28 ERS662250 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S28 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S28 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S28 sequencing assay ERX708536 cell6S28.fastq.gz cell6S28.fastq.gz ERR765307 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765307/ERR765307_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S28 cell6S29 ERS662305 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S29 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S29 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S29 sequencing assay ERX708591 cell6S29.fastq.gz cell6S29.fastq.gz ERR765382 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765382/ERR765382_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S29 cell6S29 ERS662305 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S29 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S29 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S29 sequencing assay ERX708591 cell6S29.fastq.gz cell6S29.fastq.gz ERR765382 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765382/ERR765382_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S29 cell6S3 ERS662552 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S3 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S3 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S3 sequencing assay ERX708838 cell6S3.fastq.gz cell6S3.fastq.gz ERR765291 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765291/ERR765291_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S3 cell6S3 ERS662552 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S3 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S3 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S3 sequencing assay ERX708838 cell6S3.fastq.gz cell6S3.fastq.gz ERR765291 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765291/ERR765291_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S3 cell6S30 ERS662318 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S30 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S30 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S30 sequencing assay ERX708604 cell6S30.fastq.gz cell6S30.fastq.gz ERR765573 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765573/ERR765573_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S30 cell6S30 ERS662318 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S30 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S30 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S30 sequencing assay ERX708604 cell6S30.fastq.gz cell6S30.fastq.gz ERR765573 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765573/ERR765573_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S30 cell6S31 ERS662438 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S31 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S31 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S31 sequencing assay ERX708724 cell6S31.fastq.gz cell6S31.fastq.gz ERR765330 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765330/ERR765330_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S31 cell6S31 ERS662438 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S31 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S31 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S31 sequencing assay ERX708724 cell6S31.fastq.gz cell6S31.fastq.gz ERR765330 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765330/ERR765330_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S31 cell6S32 ERS662534 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S32 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S32 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S32 sequencing assay ERX708820 cell6S32.fastq.gz cell6S32.fastq.gz ERR765269 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765269/ERR765269_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S32 cell6S32 ERS662534 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S32 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S32 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S32 sequencing assay ERX708820 cell6S32.fastq.gz cell6S32.fastq.gz ERR765269 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765269/ERR765269_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S32 cell6S33 ERS662349 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S33 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S33 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S33 sequencing assay ERX708635 cell6S33.fastq.gz cell6S33.fastq.gz ERR765320 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765320/ERR765320_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S33 cell6S33 ERS662349 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S33 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S33 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S33 sequencing assay ERX708635 cell6S33.fastq.gz cell6S33.fastq.gz ERR765320 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765320/ERR765320_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S33 cell6S34 ERS662462 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S34 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S34 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S34 sequencing assay ERX708748 cell6S34.fastq.gz cell6S34.fastq.gz ERR765428 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765428/ERR765428_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S34 cell6S34 ERS662462 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S34 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S34 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S34 sequencing assay ERX708748 cell6S34.fastq.gz cell6S34.fastq.gz ERR765428 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765428/ERR765428_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S34 cell6S35 ERS662541 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S35 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S35 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S35 sequencing assay ERX708827 cell6S35.fastq.gz cell6S35.fastq.gz ERR765280 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765280/ERR765280_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S35 cell6S35 ERS662541 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S35 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S35 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S35 sequencing assay ERX708827 cell6S35.fastq.gz cell6S35.fastq.gz ERR765280 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765280/ERR765280_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S35 cell6S36 ERS662298 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S36 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S36 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S36 sequencing assay ERX708584 cell6S36.fastq.gz cell6S36.fastq.gz ERR765354 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765354/ERR765354_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S36 cell6S36 ERS662298 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S36 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S36 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S36 sequencing assay ERX708584 cell6S36.fastq.gz cell6S36.fastq.gz ERR765354 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765354/ERR765354_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S36 cell6S37 ERS662342 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S37 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S37 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S37 sequencing assay ERX708628 cell6S37.fastq.gz cell6S37.fastq.gz ERR765494 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765494/ERR765494_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S37 cell6S37 ERS662342 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S37 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S37 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S37 sequencing assay ERX708628 cell6S37.fastq.gz cell6S37.fastq.gz ERR765494 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765494/ERR765494_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S37 cell6S38 ERS662506 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S38 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S38 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S38 sequencing assay ERX708792 cell6S38.fastq.gz cell6S38.fastq.gz ERR765426 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765426/ERR765426_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S38 cell6S38 ERS662506 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S38 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S38 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S38 sequencing assay ERX708792 cell6S38.fastq.gz cell6S38.fastq.gz ERR765426 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765426/ERR765426_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S38 cell6S39 ERS662496 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S39 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S39 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S39 sequencing assay ERX708782 cell6S39.fastq.gz cell6S39.fastq.gz ERR765506 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765506/ERR765506_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S39 cell6S39 ERS662496 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S39 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S39 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S39 sequencing assay ERX708782 cell6S39.fastq.gz cell6S39.fastq.gz ERR765506 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765506/ERR765506_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S39 cell6S4 ERS662437 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S4 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S4 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S4 sequencing assay ERX708723 cell6S4.fastq.gz cell6S4.fastq.gz ERR765467 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765467/ERR765467_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S4 cell6S4 ERS662437 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S4 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S4 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S4 sequencing assay ERX708723 cell6S4.fastq.gz cell6S4.fastq.gz ERR765467 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765467/ERR765467_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S4 cell6S40 ERS662285 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S40 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S40 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S40 sequencing assay ERX708571 cell6S40.fastq.gz cell6S40.fastq.gz ERR765292 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765292/ERR765292_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S40 cell6S40 ERS662285 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S40 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S40 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S40 sequencing assay ERX708571 cell6S40.fastq.gz cell6S40.fastq.gz ERR765292 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765292/ERR765292_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S40 cell6S41 ERS662381 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S41 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S41 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S41 sequencing assay ERX708667 cell6S41.fastq.gz cell6S41.fastq.gz ERR765528 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765528/ERR765528_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S41 cell6S41 ERS662381 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S41 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S41 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S41 sequencing assay ERX708667 cell6S41.fastq.gz cell6S41.fastq.gz ERR765528 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765528/ERR765528_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S41 cell6S42 ERS662467 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S42 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S42 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S42 sequencing assay ERX708753 cell6S42.fastq.gz cell6S42.fastq.gz ERR765495 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765495/ERR765495_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S42 cell6S42 ERS662467 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S42 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S42 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S42 sequencing assay ERX708753 cell6S42.fastq.gz cell6S42.fastq.gz ERR765495 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765495/ERR765495_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S42 cell6S5 ERS662364 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S5 sequencing assay ERX708650 cell6S5.fastq.gz cell6S5.fastq.gz ERR765335 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765335/ERR765335_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S5 cell6S5 ERS662364 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S5 sequencing assay ERX708650 cell6S5.fastq.gz cell6S5.fastq.gz ERR765335 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765335/ERR765335_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S5 cell6S6 ERS662257 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S6 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S6 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S6 sequencing assay ERX708543 cell6S6.fastq.gz cell6S6.fastq.gz ERR765345 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765345/ERR765345_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S6 cell6S6 ERS662257 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S6 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S6 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S6 sequencing assay ERX708543 cell6S6.fastq.gz cell6S6.fastq.gz ERR765345 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765345/ERR765345_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S6 cell6S7 ERS662336 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S7 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S7 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S7 sequencing assay ERX708622 cell6S7.fastq.gz cell6S7.fastq.gz ERR765362 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765362/ERR765362_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S7 cell6S7 ERS662336 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S7 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S7 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S7 sequencing assay ERX708622 cell6S7.fastq.gz cell6S7.fastq.gz ERR765362 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765362/ERR765362_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S7 cell6S8 ERS662455 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S8 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S8 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S8 sequencing assay ERX708741 cell6S8.fastq.gz cell6S8.fastq.gz ERR765350 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765350/ERR765350_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S8 cell6S8 ERS662455 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S8 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S8 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S8 sequencing assay ERX708741 cell6S8.fastq.gz cell6S8.fastq.gz ERR765350 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765350/ERR765350_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S8 cell6S9 ERS662549 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S9 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S9 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S9 sequencing assay ERX708835 cell6S9.fastq.gz cell6S9.fastq.gz ERR765518 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765518/ERR765518_1.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S9 cell6S9 ERS662549 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) stanford6 OK cell6S9 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell6S9 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell6S9 sequencing assay ERX708835 cell6S9.fastq.gz cell6S9.fastq.gz ERR765518 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765518/ERR765518_2.fastq.gz 200 101 PI(neg)CD45(neg)CDR1(neg)EpCAM(pos)MHCII(high)Ceacam1(pos) cell6S9 cell70 ERS662260 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell70 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell70 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell70 sequencing assay ERX708546 cell70.fastq.gz cell70.fastq.gz ERR765554 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765554/ERR765554_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell70 cell70 ERS662260 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell70 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell70 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell70 sequencing assay ERX708546 cell70.fastq.gz cell70.fastq.gz ERR765554 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765554/ERR765554_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell70 cell73 ERS662516 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell73 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell73 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell73 sequencing assay ERX708802 cell73.fastq.gz cell73.fastq.gz ERR765477 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765477/ERR765477_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell73 cell73 ERS662516 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell73 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell73 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell73 sequencing assay ERX708802 cell73.fastq.gz cell73.fastq.gz ERR765477 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765477/ERR765477_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell73 cell74 ERS662554 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell74 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell74 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell74 sequencing assay ERX708840 cell74.fastq.gz cell74.fastq.gz ERR765265 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765265/ERR765265_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell74 cell74 ERS662554 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell74 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell74 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell74 sequencing assay ERX708840 cell74.fastq.gz cell74.fastq.gz ERR765265 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765265/ERR765265_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell74 cell75 ERS662287 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell75 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell75 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell75 sequencing assay ERX708573 cell75.fastq.gz cell75.fastq.gz ERR765349 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765349/ERR765349_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell75 cell75 ERS662287 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell75 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell75 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell75 sequencing assay ERX708573 cell75.fastq.gz cell75.fastq.gz ERR765349 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765349/ERR765349_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell75 cell76 ERS662468 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell76 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell76 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell76 sequencing assay ERX708754 cell76.fastq.gz cell76.fastq.gz ERR765310 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765310/ERR765310_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell76 cell76 ERS662468 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell76 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell76 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell76 sequencing assay ERX708754 cell76.fastq.gz cell76.fastq.gz ERR765310 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765310/ERR765310_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell76 cell77 ERS662373 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell77 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell77 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell77 sequencing assay ERX708659 cell77.fastq.gz cell77.fastq.gz ERR765544 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765544/ERR765544_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell77 cell77 ERS662373 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell77 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell77 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell77 sequencing assay ERX708659 cell77.fastq.gz cell77.fastq.gz ERR765544 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765544/ERR765544_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell77 cell78 ERS662317 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell78 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell78 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell78 sequencing assay ERX708603 cell78.fastq.gz cell78.fastq.gz ERR765305 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765305/ERR765305_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell78 cell78 ERS662317 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell78 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell78 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell78 sequencing assay ERX708603 cell78.fastq.gz cell78.fastq.gz ERR765305 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765305/ERR765305_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell78 cell7S1 ERS662299 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S1 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S1 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S1 sequencing assay ERX708585 cell7S1.fastq.gz cell7S1.fastq.gz ERR765565 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765565/ERR765565_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S1 cell7S1 ERS662299 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S1 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S1 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S1 sequencing assay ERX708585 cell7S1.fastq.gz cell7S1.fastq.gz ERR765565 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765565/ERR765565_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S1 cell7S10 ERS662479 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S10 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S10 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S10 sequencing assay ERX708765 cell7S10.fastq.gz cell7S10.fastq.gz ERR765484 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765484/ERR765484_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S10 cell7S10 ERS662479 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S10 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S10 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S10 sequencing assay ERX708765 cell7S10.fastq.gz cell7S10.fastq.gz ERR765484 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765484/ERR765484_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S10 cell7S11 ERS662374 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S11 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S11 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S11 sequencing assay ERX708660 cell7S11.fastq.gz cell7S11.fastq.gz ERR765511 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765511/ERR765511_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S11 cell7S11 ERS662374 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S11 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S11 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S11 sequencing assay ERX708660 cell7S11.fastq.gz cell7S11.fastq.gz ERR765511 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765511/ERR765511_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S11 cell7S12 ERS662251 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S12 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S12 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S12 sequencing assay ERX708537 cell7S12.fastq.gz cell7S12.fastq.gz ERR765541 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765541/ERR765541_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S12 cell7S12 ERS662251 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S12 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S12 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S12 sequencing assay ERX708537 cell7S12.fastq.gz cell7S12.fastq.gz ERR765541 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765541/ERR765541_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S12 cell7S13 ERS662484 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S13 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S13 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S13 sequencing assay ERX708770 cell7S13.fastq.gz cell7S13.fastq.gz ERR765441 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765441/ERR765441_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S13 cell7S13 ERS662484 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S13 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S13 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S13 sequencing assay ERX708770 cell7S13.fastq.gz cell7S13.fastq.gz ERR765441 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765441/ERR765441_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S13 cell7S14 ERS662459 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S14 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S14 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S14 sequencing assay ERX708745 cell7S14.fastq.gz cell7S14.fastq.gz ERR765334 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765334/ERR765334_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S14 cell7S14 ERS662459 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S14 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S14 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S14 sequencing assay ERX708745 cell7S14.fastq.gz cell7S14.fastq.gz ERR765334 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765334/ERR765334_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S14 cell7S15 ERS662365 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S15 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S15 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S15 sequencing assay ERX708651 cell7S15.fastq.gz cell7S15.fastq.gz ERR765271 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765271/ERR765271_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S15 cell7S15 ERS662365 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S15 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S15 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S15 sequencing assay ERX708651 cell7S15.fastq.gz cell7S15.fastq.gz ERR765271 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765271/ERR765271_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S15 cell7S16 ERS662261 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S16 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S16 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S16 sequencing assay ERX708547 cell7S16.fastq.gz cell7S16.fastq.gz ERR765348 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765348/ERR765348_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S16 cell7S16 ERS662261 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S16 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S16 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S16 sequencing assay ERX708547 cell7S16.fastq.gz cell7S16.fastq.gz ERR765348 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765348/ERR765348_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S16 cell7S17 ERS662443 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S17 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S17 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S17 sequencing assay ERX708729 cell7S17.fastq.gz cell7S17.fastq.gz ERR765355 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765355/ERR765355_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S17 cell7S17 ERS662443 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S17 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S17 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S17 sequencing assay ERX708729 cell7S17.fastq.gz cell7S17.fastq.gz ERR765355 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765355/ERR765355_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S17 cell7S18 ERS662313 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S18 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S18 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S18 sequencing assay ERX708599 cell7S18.fastq.gz cell7S18.fastq.gz ERR765481 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765481/ERR765481_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S18 cell7S18 ERS662313 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S18 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S18 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S18 sequencing assay ERX708599 cell7S18.fastq.gz cell7S18.fastq.gz ERR765481 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765481/ERR765481_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S18 cell7S19 ERS662226 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S19 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S19 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S19 sequencing assay ERX708512 cell7S19.fastq.gz cell7S19.fastq.gz ERR765471 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765471/ERR765471_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S19 cell7S19 ERS662226 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S19 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S19 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S19 sequencing assay ERX708512 cell7S19.fastq.gz cell7S19.fastq.gz ERR765471 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765471/ERR765471_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S19 cell7S2 ERS662229 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S2 sequencing assay ERX708515 cell7S2.fastq.gz cell7S2.fastq.gz ERR765406 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765406/ERR765406_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S2 cell7S2 ERS662229 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S2 sequencing assay ERX708515 cell7S2.fastq.gz cell7S2.fastq.gz ERR765406 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765406/ERR765406_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S2 cell7S20 ERS662432 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S20 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S20 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S20 sequencing assay ERX708718 cell7S20.fastq.gz cell7S20.fastq.gz ERR765289 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765289/ERR765289_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S20 cell7S20 ERS662432 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S20 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S20 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S20 sequencing assay ERX708718 cell7S20.fastq.gz cell7S20.fastq.gz ERR765289 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765289/ERR765289_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S20 cell7S21 ERS662509 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S21 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S21 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S21 sequencing assay ERX708795 cell7S21.fastq.gz cell7S21.fastq.gz ERR765317 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765317/ERR765317_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S21 cell7S21 ERS662509 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S21 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S21 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S21 sequencing assay ERX708795 cell7S21.fastq.gz cell7S21.fastq.gz ERR765317 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765317/ERR765317_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S21 cell7S22 ERS662559 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S22 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S22 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S22 sequencing assay ERX708845 cell7S22.fastq.gz cell7S22.fastq.gz ERR765445 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765445/ERR765445_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S22 cell7S22 ERS662559 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S22 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S22 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S22 sequencing assay ERX708845 cell7S22.fastq.gz cell7S22.fastq.gz ERR765445 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765445/ERR765445_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S22 cell7S23 ERS662465 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S23 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S23 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S23 sequencing assay ERX708751 cell7S23.fastq.gz cell7S23.fastq.gz ERR765399 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765399/ERR765399_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S23 cell7S23 ERS662465 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S23 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S23 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S23 sequencing assay ERX708751 cell7S23.fastq.gz cell7S23.fastq.gz ERR765399 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765399/ERR765399_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S23 cell7S24 ERS662392 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S24 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S24 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S24 sequencing assay ERX708678 cell7S24.fastq.gz cell7S24.fastq.gz ERR765400 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765400/ERR765400_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S24 cell7S24 ERS662392 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S24 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S24 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S24 sequencing assay ERX708678 cell7S24.fastq.gz cell7S24.fastq.gz ERR765400 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765400/ERR765400_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S24 cell7S25 ERS662451 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S25 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S25 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S25 sequencing assay ERX708737 cell7S25.fastq.gz cell7S25.fastq.gz ERR765313 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765313/ERR765313_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S25 cell7S25 ERS662451 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S25 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S25 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S25 sequencing assay ERX708737 cell7S25.fastq.gz cell7S25.fastq.gz ERR765313 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765313/ERR765313_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S25 cell7S26 ERS662493 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S26 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S26 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S26 sequencing assay ERX708779 cell7S26.fastq.gz cell7S26.fastq.gz ERR765427 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765427/ERR765427_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S26 cell7S26 ERS662493 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S26 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S26 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S26 sequencing assay ERX708779 cell7S26.fastq.gz cell7S26.fastq.gz ERR765427 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765427/ERR765427_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S26 cell7S27 ERS662255 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S27 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S27 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S27 sequencing assay ERX708541 cell7S27.fastq.gz cell7S27.fastq.gz ERR765568 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765568/ERR765568_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S27 cell7S27 ERS662255 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S27 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S27 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S27 sequencing assay ERX708541 cell7S27.fastq.gz cell7S27.fastq.gz ERR765568 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765568/ERR765568_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S27 cell7S28 ERS662309 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S28 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S28 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S28 sequencing assay ERX708595 cell7S28.fastq.gz cell7S28.fastq.gz ERR765342 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765342/ERR765342_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S28 cell7S28 ERS662309 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S28 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S28 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S28 sequencing assay ERX708595 cell7S28.fastq.gz cell7S28.fastq.gz ERR765342 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765342/ERR765342_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S28 cell7S29 ERS662401 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S29 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S29 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S29 sequencing assay ERX708687 cell7S29.fastq.gz cell7S29.fastq.gz ERR765339 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765339/ERR765339_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S29 cell7S29 ERS662401 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S29 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S29 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S29 sequencing assay ERX708687 cell7S29.fastq.gz cell7S29.fastq.gz ERR765339 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765339/ERR765339_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S29 cell7S3 ERS662523 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S3 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S3 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S3 sequencing assay ERX708809 cell7S3.fastq.gz cell7S3.fastq.gz ERR765316 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765316/ERR765316_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S3 cell7S3 ERS662523 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S3 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S3 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S3 sequencing assay ERX708809 cell7S3.fastq.gz cell7S3.fastq.gz ERR765316 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765316/ERR765316_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S3 cell7S30 ERS662419 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S30 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S30 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S30 sequencing assay ERX708705 cell7S30.fastq.gz cell7S30.fastq.gz ERR765302 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765302/ERR765302_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S30 cell7S30 ERS662419 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S30 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S30 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S30 sequencing assay ERX708705 cell7S30.fastq.gz cell7S30.fastq.gz ERR765302 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765302/ERR765302_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S30 cell7S31 ERS662504 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S31 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S31 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S31 sequencing assay ERX708790 cell7S31.fastq.gz cell7S31.fastq.gz ERR765501 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765501/ERR765501_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S31 cell7S31 ERS662504 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S31 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S31 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S31 sequencing assay ERX708790 cell7S31.fastq.gz cell7S31.fastq.gz ERR765501 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765501/ERR765501_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S31 cell7S32 ERS662560 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S32 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S32 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S32 sequencing assay ERX708846 cell7S32.fastq.gz cell7S32.fastq.gz ERR765398 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765398/ERR765398_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S32 cell7S32 ERS662560 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S32 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S32 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S32 sequencing assay ERX708846 cell7S32.fastq.gz cell7S32.fastq.gz ERR765398 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765398/ERR765398_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S32 cell7S33 ERS662227 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S33 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S33 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S33 sequencing assay ERX708513 cell7S33.fastq.gz cell7S33.fastq.gz ERR765301 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765301/ERR765301_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S33 cell7S33 ERS662227 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S33 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S33 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S33 sequencing assay ERX708513 cell7S33.fastq.gz cell7S33.fastq.gz ERR765301 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765301/ERR765301_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S33 cell7S34 ERS662322 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S34 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S34 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S34 sequencing assay ERX708608 cell7S34.fastq.gz cell7S34.fastq.gz ERR765574 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765574/ERR765574_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S34 cell7S34 ERS662322 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S34 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S34 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S34 sequencing assay ERX708608 cell7S34.fastq.gz cell7S34.fastq.gz ERR765574 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765574/ERR765574_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S34 cell7S35 ERS662404 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S35 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S35 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S35 sequencing assay ERX708690 cell7S35.fastq.gz cell7S35.fastq.gz ERR765529 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765529/ERR765529_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S35 cell7S35 ERS662404 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S35 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S35 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S35 sequencing assay ERX708690 cell7S35.fastq.gz cell7S35.fastq.gz ERR765529 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765529/ERR765529_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S35 cell7S36 ERS662440 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S36 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S36 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S36 sequencing assay ERX708726 cell7S36.fastq.gz cell7S36.fastq.gz ERR765491 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765491/ERR765491_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S36 cell7S36 ERS662440 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S36 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S36 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S36 sequencing assay ERX708726 cell7S36.fastq.gz cell7S36.fastq.gz ERR765491 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765491/ERR765491_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S36 cell7S37 ERS662537 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S37 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S37 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S37 sequencing assay ERX708823 cell7S37.fastq.gz cell7S37.fastq.gz ERR765476 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765476/ERR765476_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S37 cell7S37 ERS662537 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S37 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S37 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S37 sequencing assay ERX708823 cell7S37.fastq.gz cell7S37.fastq.gz ERR765476 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765476/ERR765476_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S37 cell7S38 ERS662272 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S38 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S38 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S38 sequencing assay ERX708558 cell7S38.fastq.gz cell7S38.fastq.gz ERR765553 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765553/ERR765553_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S38 cell7S38 ERS662272 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S38 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S38 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S38 sequencing assay ERX708558 cell7S38.fastq.gz cell7S38.fastq.gz ERR765553 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765553/ERR765553_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S38 cell7S39 ERS662352 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S39 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S39 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S39 sequencing assay ERX708638 cell7S39.fastq.gz cell7S39.fastq.gz ERR765340 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765340/ERR765340_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S39 cell7S39 ERS662352 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S39 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S39 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S39 sequencing assay ERX708638 cell7S39.fastq.gz cell7S39.fastq.gz ERR765340 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765340/ERR765340_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S39 cell7S4 ERS662472 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S4 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S4 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S4 sequencing assay ERX708758 cell7S4.fastq.gz cell7S4.fastq.gz ERR765255 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765255/ERR765255_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S4 cell7S4 ERS662472 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S4 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S4 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S4 sequencing assay ERX708758 cell7S4.fastq.gz cell7S4.fastq.gz ERR765255 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765255/ERR765255_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S4 cell7S40 ERS662448 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S40 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S40 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S40 sequencing assay ERX708734 cell7S40.fastq.gz cell7S40.fastq.gz ERR765266 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765266/ERR765266_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S40 cell7S40 ERS662448 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S40 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S40 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S40 sequencing assay ERX708734 cell7S40.fastq.gz cell7S40.fastq.gz ERR765266 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765266/ERR765266_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S40 cell7S41 ERS662363 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S41 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S41 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S41 sequencing assay ERX708649 cell7S41.fastq.gz cell7S41.fastq.gz ERR765391 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765391/ERR765391_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S41 cell7S41 ERS662363 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S41 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S41 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S41 sequencing assay ERX708649 cell7S41.fastq.gz cell7S41.fastq.gz ERR765391 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765391/ERR765391_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S41 cell7S42 ERS662253 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S42 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S42 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S42 sequencing assay ERX708539 cell7S42.fastq.gz cell7S42.fastq.gz ERR765575 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765575/ERR765575_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S42 cell7S42 ERS662253 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S42 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S42 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S42 sequencing assay ERX708539 cell7S42.fastq.gz cell7S42.fastq.gz ERR765575 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765575/ERR765575_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S42 cell7S43 ERS662510 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S43 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S43 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S43 sequencing assay ERX708796 cell7S43.fastq.gz cell7S43.fastq.gz ERR765493 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765493/ERR765493_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S43 cell7S43 ERS662510 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S43 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S43 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S43 sequencing assay ERX708796 cell7S43.fastq.gz cell7S43.fastq.gz ERR765493 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765493/ERR765493_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S43 cell7S44 ERS662486 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S44 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S44 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S44 sequencing assay ERX708772 cell7S44.fastq.gz cell7S44.fastq.gz ERR765490 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765490/ERR765490_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S44 cell7S44 ERS662486 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S44 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S44 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S44 sequencing assay ERX708772 cell7S44.fastq.gz cell7S44.fastq.gz ERR765490 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765490/ERR765490_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S44 cell7S45 ERS662235 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S45 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S45 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S45 sequencing assay ERX708521 cell7S45.fastq.gz cell7S45.fastq.gz ERR765520 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765520/ERR765520_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S45 cell7S45 ERS662235 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S45 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S45 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S45 sequencing assay ERX708521 cell7S45.fastq.gz cell7S45.fastq.gz ERR765520 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765520/ERR765520_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S45 cell7S46 ERS662338 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S46 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S46 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S46 sequencing assay ERX708624 cell7S46.fastq.gz cell7S46.fastq.gz ERR765521 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765521/ERR765521_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S46 cell7S46 ERS662338 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S46 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S46 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S46 sequencing assay ERX708624 cell7S46.fastq.gz cell7S46.fastq.gz ERR765521 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765521/ERR765521_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S46 cell7S47 ERS662399 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S47 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S47 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S47 sequencing assay ERX708685 cell7S47.fastq.gz cell7S47.fastq.gz ERR765517 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765517/ERR765517_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S47 cell7S47 ERS662399 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S47 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S47 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S47 sequencing assay ERX708685 cell7S47.fastq.gz cell7S47.fastq.gz ERR765517 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765517/ERR765517_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S47 cell7S48 ERS662270 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S48 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S48 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S48 sequencing assay ERX708556 cell7S48.fastq.gz cell7S48.fastq.gz ERR765516 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765516/ERR765516_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S48 cell7S48 ERS662270 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S48 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S48 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S48 sequencing assay ERX708556 cell7S48.fastq.gz cell7S48.fastq.gz ERR765516 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765516/ERR765516_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S48 cell7S5 ERS662264 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S5 sequencing assay ERX708550 cell7S5.fastq.gz cell7S5.fastq.gz ERR765498 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765498/ERR765498_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S5 cell7S5 ERS662264 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S5 sequencing assay ERX708550 cell7S5.fastq.gz cell7S5.fastq.gz ERR765498 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765498/ERR765498_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S5 cell7S6 ERS662406 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S6 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S6 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S6 sequencing assay ERX708692 cell7S6.fastq.gz cell7S6.fastq.gz ERR765474 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765474/ERR765474_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S6 cell7S6 ERS662406 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S6 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S6 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S6 sequencing assay ERX708692 cell7S6.fastq.gz cell7S6.fastq.gz ERR765474 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765474/ERR765474_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S6 cell7S7 ERS662452 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S7 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S7 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S7 sequencing assay ERX708738 cell7S7.fastq.gz cell7S7.fastq.gz ERR765472 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765472/ERR765472_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S7 cell7S7 ERS662452 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S7 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S7 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S7 sequencing assay ERX708738 cell7S7.fastq.gz cell7S7.fastq.gz ERR765472 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765472/ERR765472_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S7 cell7S8 ERS662248 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S8 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S8 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S8 sequencing assay ERX708534 cell7S8.fastq.gz cell7S8.fastq.gz ERR765561 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765561/ERR765561_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S8 cell7S8 ERS662248 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S8 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S8 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S8 sequencing assay ERX708534 cell7S8.fastq.gz cell7S8.fastq.gz ERR765561 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765561/ERR765561_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S8 cell7S9 ERS662293 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S9 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S9 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S9 sequencing assay ERX708579 cell7S9.fastq.gz cell7S9.fastq.gz ERR765448 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765448/ERR765448_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S9 cell7S9 ERS662293 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford7 OK cell7S9 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell7S9 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell7S9 sequencing assay ERX708579 cell7S9.fastq.gz cell7S9.fastq.gz ERR765448 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765448/ERR765448_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell7S9 cell80 ERS662483 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell80 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell80 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell80 sequencing assay ERX708769 cell80.fastq.gz cell80.fastq.gz ERR765479 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765479/ERR765479_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell80 cell80 ERS662483 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell80 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell80 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell80 sequencing assay ERX708769 cell80.fastq.gz cell80.fastq.gz ERR765479 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765479/ERR765479_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell80 cell84 ERS662515 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell84 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell84 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell84 sequencing assay ERX708801 cell84.fastq.gz cell84.fastq.gz ERR765324 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765324/ERR765324_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell84 cell84 ERS662515 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell84 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell84 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell84 sequencing assay ERX708801 cell84.fastq.gz cell84.fastq.gz ERR765324 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765324/ERR765324_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell84 cell86 ERS662304 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell86 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell86 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell86 sequencing assay ERX708590 cell86.fastq.gz cell86.fastq.gz ERR765379 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765379/ERR765379_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell86 cell86 ERS662304 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell86 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell86 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell86 sequencing assay ERX708590 cell86.fastq.gz cell86.fastq.gz ERR765379 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765379/ERR765379_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell86 cell87 ERS662548 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell87 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell87 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell87 sequencing assay ERX708834 cell87.fastq.gz cell87.fastq.gz ERR765431 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765431/ERR765431_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell87 cell87 ERS662548 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell87 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell87 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell87 sequencing assay ERX708834 cell87.fastq.gz cell87.fastq.gz ERR765431 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765431/ERR765431_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell87 cell88 ERS662414 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell88 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell88 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell88 sequencing assay ERX708700 cell88.fastq.gz cell88.fastq.gz ERR765425 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765425/ERR765425_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell88 cell88 ERS662414 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell88 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell88 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell88 sequencing assay ERX708700 cell88.fastq.gz cell88.fastq.gz ERR765425 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765425/ERR765425_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell88 cell8S1 ERS662538 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S1 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S1 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S1 sequencing assay ERX708824 cell8S1.fastq.gz cell8S1.fastq.gz ERR765372 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765372/ERR765372_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S1 cell8S1 ERS662538 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S1 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S1 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S1 sequencing assay ERX708824 cell8S1.fastq.gz cell8S1.fastq.gz ERR765372 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765372/ERR765372_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S1 cell8S10 ERS662380 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S10 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S10 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S10 sequencing assay ERX708666 cell8S10.fastq.gz cell8S10.fastq.gz ERR765537 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765537/ERR765537_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S10 cell8S10 ERS662380 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S10 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S10 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S10 sequencing assay ERX708666 cell8S10.fastq.gz cell8S10.fastq.gz ERR765537 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765537/ERR765537_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S10 cell8S11 ERS662474 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S11 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S11 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S11 sequencing assay ERX708760 cell8S11.fastq.gz cell8S11.fastq.gz ERR765239 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765239/ERR765239_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S11 cell8S11 ERS662474 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S11 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S11 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S11 sequencing assay ERX708760 cell8S11.fastq.gz cell8S11.fastq.gz ERR765239 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765239/ERR765239_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S11 cell8S12 ERS662526 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S12 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S12 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S12 sequencing assay ERX708812 cell8S12.fastq.gz cell8S12.fastq.gz ERR765273 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765273/ERR765273_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S12 cell8S12 ERS662526 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S12 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S12 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S12 sequencing assay ERX708812 cell8S12.fastq.gz cell8S12.fastq.gz ERR765273 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765273/ERR765273_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S12 cell8S13 ERS662275 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S13 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S13 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S13 sequencing assay ERX708561 cell8S13.fastq.gz cell8S13.fastq.gz ERR765514 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765514/ERR765514_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S13 cell8S13 ERS662275 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S13 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S13 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S13 sequencing assay ERX708561 cell8S13.fastq.gz cell8S13.fastq.gz ERR765514 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765514/ERR765514_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S13 cell8S14 ERS662368 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S14 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S14 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S14 sequencing assay ERX708654 cell8S14.fastq.gz cell8S14.fastq.gz ERR765546 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765546/ERR765546_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S14 cell8S14 ERS662368 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S14 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S14 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S14 sequencing assay ERX708654 cell8S14.fastq.gz cell8S14.fastq.gz ERR765546 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765546/ERR765546_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S14 cell8S15 ERS662420 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S15 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S15 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S15 sequencing assay ERX708706 cell8S15.fastq.gz cell8S15.fastq.gz ERR765329 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765329/ERR765329_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S15 cell8S15 ERS662420 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S15 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S15 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S15 sequencing assay ERX708706 cell8S15.fastq.gz cell8S15.fastq.gz ERR765329 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765329/ERR765329_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S15 cell8S16 ERS662535 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S16 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S16 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S16 sequencing assay ERX708821 cell8S16.fastq.gz cell8S16.fastq.gz ERR765446 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765446/ERR765446_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S16 cell8S16 ERS662535 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S16 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S16 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S16 sequencing assay ERX708821 cell8S16.fastq.gz cell8S16.fastq.gz ERR765446 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765446/ERR765446_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S16 cell8S17 ERS662348 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S17 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S17 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S17 sequencing assay ERX708634 cell8S17.fastq.gz cell8S17.fastq.gz ERR765492 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765492/ERR765492_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S17 cell8S17 ERS662348 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S17 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S17 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S17 sequencing assay ERX708634 cell8S17.fastq.gz cell8S17.fastq.gz ERR765492 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765492/ERR765492_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S17 cell8S18 ERS662267 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S18 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S18 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S18 sequencing assay ERX708553 cell8S18.fastq.gz cell8S18.fastq.gz ERR765572 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765572/ERR765572_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S18 cell8S18 ERS662267 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S18 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S18 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S18 sequencing assay ERX708553 cell8S18.fastq.gz cell8S18.fastq.gz ERR765572 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765572/ERR765572_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S18 cell8S19 ERS662542 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S19 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S19 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S19 sequencing assay ERX708828 cell8S19.fastq.gz cell8S19.fastq.gz ERR765505 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765505/ERR765505_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S19 cell8S19 ERS662542 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S19 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S19 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S19 sequencing assay ERX708828 cell8S19.fastq.gz cell8S19.fastq.gz ERR765505 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765505/ERR765505_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S19 cell8S2 ERS662446 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S2 sequencing assay ERX708732 cell8S2.fastq.gz cell8S2.fastq.gz ERR765376 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765376/ERR765376_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S2 cell8S2 ERS662446 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S2 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S2 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S2 sequencing assay ERX708732 cell8S2.fastq.gz cell8S2.fastq.gz ERR765376 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765376/ERR765376_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S2 cell8S20 ERS662532 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S20 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S20 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S20 sequencing assay ERX708818 cell8S20.fastq.gz cell8S20.fastq.gz ERR765550 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765550/ERR765550_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S20 cell8S20 ERS662532 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S20 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S20 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S20 sequencing assay ERX708818 cell8S20.fastq.gz cell8S20.fastq.gz ERR765550 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765550/ERR765550_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S20 cell8S21 ERS662258 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S21 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S21 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S21 sequencing assay ERX708544 cell8S21.fastq.gz cell8S21.fastq.gz ERR765434 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765434/ERR765434_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S21 cell8S21 ERS662258 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S21 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S21 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S21 sequencing assay ERX708544 cell8S21.fastq.gz cell8S21.fastq.gz ERR765434 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765434/ERR765434_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S21 cell8S22 ERS662339 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S22 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S22 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S22 sequencing assay ERX708625 cell8S22.fastq.gz cell8S22.fastq.gz ERR765415 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765415/ERR765415_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S22 cell8S22 ERS662339 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S22 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S22 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S22 sequencing assay ERX708625 cell8S22.fastq.gz cell8S22.fastq.gz ERR765415 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765415/ERR765415_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S22 cell8S23 ERS662436 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S23 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S23 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S23 sequencing assay ERX708722 cell8S23.fastq.gz cell8S23.fastq.gz ERR765455 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765455/ERR765455_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S23 cell8S23 ERS662436 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S23 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S23 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S23 sequencing assay ERX708722 cell8S23.fastq.gz cell8S23.fastq.gz ERR765455 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765455/ERR765455_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S23 cell8S24 ERS662562 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S24 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S24 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S24 sequencing assay ERX708848 cell8S24.fastq.gz cell8S24.fastq.gz ERR765258 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765258/ERR765258_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S24 cell8S24 ERS662562 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S24 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S24 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S24 sequencing assay ERX708848 cell8S24.fastq.gz cell8S24.fastq.gz ERR765258 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765258/ERR765258_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S24 cell8S25 ERS662396 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S25 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S25 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S25 sequencing assay ERX708682 cell8S25.fastq.gz cell8S25.fastq.gz ERR765358 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765358/ERR765358_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S25 cell8S25 ERS662396 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S25 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S25 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S25 sequencing assay ERX708682 cell8S25.fastq.gz cell8S25.fastq.gz ERR765358 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765358/ERR765358_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S25 cell8S26 ERS662489 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S26 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S26 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S26 sequencing assay ERX708775 cell8S26.fastq.gz cell8S26.fastq.gz ERR765238 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765238/ERR765238_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S26 cell8S26 ERS662489 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S26 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S26 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S26 sequencing assay ERX708775 cell8S26.fastq.gz cell8S26.fastq.gz ERR765238 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765238/ERR765238_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S26 cell8S27 ERS662256 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S27 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S27 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S27 sequencing assay ERX708542 cell8S27.fastq.gz cell8S27.fastq.gz ERR765262 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765262/ERR765262_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S27 cell8S27 ERS662256 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S27 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S27 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S27 sequencing assay ERX708542 cell8S27.fastq.gz cell8S27.fastq.gz ERR765262 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765262/ERR765262_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S27 cell8S28 ERS662357 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S28 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S28 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S28 sequencing assay ERX708643 cell8S28.fastq.gz cell8S28.fastq.gz ERR765347 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765347/ERR765347_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S28 cell8S28 ERS662357 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S28 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S28 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S28 sequencing assay ERX708643 cell8S28.fastq.gz cell8S28.fastq.gz ERR765347 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765347/ERR765347_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S28 cell8S29 ERS662408 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S29 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S29 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S29 sequencing assay ERX708694 cell8S29.fastq.gz cell8S29.fastq.gz ERR765515 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765515/ERR765515_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S29 cell8S29 ERS662408 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S29 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S29 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S29 sequencing assay ERX708694 cell8S29.fastq.gz cell8S29.fastq.gz ERR765515 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765515/ERR765515_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S29 cell8S3 ERS662314 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S3 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S3 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S3 sequencing assay ERX708600 cell8S3.fastq.gz cell8S3.fastq.gz ERR765421 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765421/ERR765421_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S3 cell8S3 ERS662314 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S3 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S3 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S3 sequencing assay ERX708600 cell8S3.fastq.gz cell8S3.fastq.gz ERR765421 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765421/ERR765421_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S3 cell8S30 ERS662481 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S30 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S30 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S30 sequencing assay ERX708767 cell8S30.fastq.gz cell8S30.fastq.gz ERR765438 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765438/ERR765438_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S30 cell8S30 ERS662481 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S30 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S30 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S30 sequencing assay ERX708767 cell8S30.fastq.gz cell8S30.fastq.gz ERR765438 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765438/ERR765438_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S30 cell8S31 ERS662273 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S31 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S31 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S31 sequencing assay ERX708559 cell8S31.fastq.gz cell8S31.fastq.gz ERR765519 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765519/ERR765519_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S31 cell8S31 ERS662273 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S31 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S31 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S31 sequencing assay ERX708559 cell8S31.fastq.gz cell8S31.fastq.gz ERR765519 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765519/ERR765519_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S31 cell8S32 ERS662386 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S32 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S32 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S32 sequencing assay ERX708672 cell8S32.fastq.gz cell8S32.fastq.gz ERR765403 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765403/ERR765403_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S32 cell8S32 ERS662386 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S32 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S32 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S32 sequencing assay ERX708672 cell8S32.fastq.gz cell8S32.fastq.gz ERR765403 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765403/ERR765403_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S32 cell8S33 ERS662457 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S33 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S33 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S33 sequencing assay ERX708743 cell8S33.fastq.gz cell8S33.fastq.gz ERR765383 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765383/ERR765383_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S33 cell8S33 ERS662457 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S33 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S33 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S33 sequencing assay ERX708743 cell8S33.fastq.gz cell8S33.fastq.gz ERR765383 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765383/ERR765383_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S33 cell8S34 ERS662561 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S34 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S34 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S34 sequencing assay ERX708847 cell8S34.fastq.gz cell8S34.fastq.gz ERR765444 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765444/ERR765444_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S34 cell8S34 ERS662561 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S34 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S34 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S34 sequencing assay ERX708847 cell8S34.fastq.gz cell8S34.fastq.gz ERR765444 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765444/ERR765444_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S34 cell8S35 ERS662340 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S35 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S35 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S35 sequencing assay ERX708626 cell8S35.fastq.gz cell8S35.fastq.gz ERR765410 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765410/ERR765410_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S35 cell8S35 ERS662340 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S35 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S35 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S35 sequencing assay ERX708626 cell8S35.fastq.gz cell8S35.fastq.gz ERR765410 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765410/ERR765410_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S35 cell8S36 ERS662450 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S36 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S36 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S36 sequencing assay ERX708736 cell8S36.fastq.gz cell8S36.fastq.gz ERR765435 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765435/ERR765435_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S36 cell8S36 ERS662450 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S36 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S36 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S36 sequencing assay ERX708736 cell8S36.fastq.gz cell8S36.fastq.gz ERR765435 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765435/ERR765435_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S36 cell8S37 ERS662276 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S37 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S37 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S37 sequencing assay ERX708562 cell8S37.fastq.gz cell8S37.fastq.gz ERR765524 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765524/ERR765524_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S37 cell8S37 ERS662276 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S37 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S37 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S37 sequencing assay ERX708562 cell8S37.fastq.gz cell8S37.fastq.gz ERR765524 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765524/ERR765524_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S37 cell8S38 ERS662413 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S38 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S38 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S38 sequencing assay ERX708699 cell8S38.fastq.gz cell8S38.fastq.gz ERR765281 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765281/ERR765281_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S38 cell8S38 ERS662413 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S38 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S38 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S38 sequencing assay ERX708699 cell8S38.fastq.gz cell8S38.fastq.gz ERR765281 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765281/ERR765281_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S38 cell8S39 ERS662315 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S39 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S39 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S39 sequencing assay ERX708601 cell8S39.fastq.gz cell8S39.fastq.gz ERR765527 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765527/ERR765527_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S39 cell8S39 ERS662315 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S39 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S39 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S39 sequencing assay ERX708601 cell8S39.fastq.gz cell8S39.fastq.gz ERR765527 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765527/ERR765527_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S39 cell8S4 ERS662238 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S4 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S4 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S4 sequencing assay ERX708524 cell8S4.fastq.gz cell8S4.fastq.gz ERR765375 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765375/ERR765375_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S4 cell8S4 ERS662238 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S4 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S4 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S4 sequencing assay ERX708524 cell8S4.fastq.gz cell8S4.fastq.gz ERR765375 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765375/ERR765375_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S4 cell8S40 ERS662429 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S40 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S40 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S40 sequencing assay ERX708715 cell8S40.fastq.gz cell8S40.fastq.gz ERR765485 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765485/ERR765485_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S40 cell8S40 ERS662429 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S40 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S40 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S40 sequencing assay ERX708715 cell8S40.fastq.gz cell8S40.fastq.gz ERR765485 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765485/ERR765485_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S40 cell8S41 ERS662546 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S41 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S41 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S41 sequencing assay ERX708832 cell8S41.fastq.gz cell8S41.fastq.gz ERR765487 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765487/ERR765487_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S41 cell8S41 ERS662546 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S41 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S41 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S41 sequencing assay ERX708832 cell8S41.fastq.gz cell8S41.fastq.gz ERR765487 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765487/ERR765487_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S41 cell8S42 ERS662288 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S42 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S42 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S42 sequencing assay ERX708574 cell8S42.fastq.gz cell8S42.fastq.gz ERR765542 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765542/ERR765542_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S42 cell8S42 ERS662288 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S42 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S42 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S42 sequencing assay ERX708574 cell8S42.fastq.gz cell8S42.fastq.gz ERR765542 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765542/ERR765542_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S42 cell8S43 ERS662390 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S43 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S43 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S43 sequencing assay ERX708676 cell8S43.fastq.gz cell8S43.fastq.gz ERR765312 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765312/ERR765312_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S43 cell8S43 ERS662390 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S43 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S43 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S43 sequencing assay ERX708676 cell8S43.fastq.gz cell8S43.fastq.gz ERR765312 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765312/ERR765312_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S43 cell8S44 ERS662403 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S44 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S44 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S44 sequencing assay ERX708689 cell8S44.fastq.gz cell8S44.fastq.gz ERR765549 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765549/ERR765549_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S44 cell8S44 ERS662403 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S44 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S44 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S44 sequencing assay ERX708689 cell8S44.fastq.gz cell8S44.fastq.gz ERR765549 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765549/ERR765549_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S44 cell8S45 ERS662520 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S45 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S45 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S45 sequencing assay ERX708806 cell8S45.fastq.gz cell8S45.fastq.gz ERR765417 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765417/ERR765417_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S45 cell8S45 ERS662520 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S45 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S45 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S45 sequencing assay ERX708806 cell8S45.fastq.gz cell8S45.fastq.gz ERR765417 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765417/ERR765417_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S45 cell8S46 ERS662345 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S46 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S46 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S46 sequencing assay ERX708631 cell8S46.fastq.gz cell8S46.fastq.gz ERR765456 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765456/ERR765456_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S46 cell8S46 ERS662345 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S46 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S46 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S46 sequencing assay ERX708631 cell8S46.fastq.gz cell8S46.fastq.gz ERR765456 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765456/ERR765456_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S46 cell8S47 ERS662325 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S47 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S47 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S47 sequencing assay ERX708611 cell8S47.fastq.gz cell8S47.fastq.gz ERR765260 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765260/ERR765260_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S47 cell8S47 ERS662325 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S47 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S47 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S47 sequencing assay ERX708611 cell8S47.fastq.gz cell8S47.fastq.gz ERR765260 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765260/ERR765260_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S47 cell8S48 ERS662423 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S48 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S48 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S48 sequencing assay ERX708709 cell8S48.fastq.gz cell8S48.fastq.gz ERR765373 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765373/ERR765373_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S48 cell8S48 ERS662423 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S48 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S48 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S48 sequencing assay ERX708709 cell8S48.fastq.gz cell8S48.fastq.gz ERR765373 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765373/ERR765373_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S48 cell8S5 ERS662292 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S5 sequencing assay ERX708578 cell8S5.fastq.gz cell8S5.fastq.gz ERR765503 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765503/ERR765503_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S5 cell8S5 ERS662292 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S5 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S5 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S5 sequencing assay ERX708578 cell8S5.fastq.gz cell8S5.fastq.gz ERR765503 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765503/ERR765503_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S5 cell8S6 ERS662547 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S6 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S6 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S6 sequencing assay ERX708833 cell8S6.fastq.gz cell8S6.fastq.gz ERR765436 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765436/ERR765436_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S6 cell8S6 ERS662547 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S6 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S6 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S6 sequencing assay ERX708833 cell8S6.fastq.gz cell8S6.fastq.gz ERR765436 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765436/ERR765436_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S6 cell8S7 ERS662525 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S7 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S7 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S7 sequencing assay ERX708811 cell8S7.fastq.gz cell8S7.fastq.gz ERR765462 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765462/ERR765462_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S7 cell8S7 ERS662525 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S7 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S7 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S7 sequencing assay ERX708811 cell8S7.fastq.gz cell8S7.fastq.gz ERR765462 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765462/ERR765462_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S7 cell8S8 ERS662379 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S8 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S8 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S8 sequencing assay ERX708665 cell8S8.fastq.gz cell8S8.fastq.gz ERR765547 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765547/ERR765547_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S8 cell8S8 ERS662379 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S8 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S8 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S8 sequencing assay ERX708665 cell8S8.fastq.gz cell8S8.fastq.gz ERR765547 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765547/ERR765547_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S8 cell8S9 ERS662280 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S9 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S9 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S9 sequencing assay ERX708566 cell8S9.fastq.gz cell8S9.fastq.gz ERR765422 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765422/ERR765422_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S9 cell8S9 ERS662280 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) stanford8 OK cell8S9 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell8S9 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell8S9 sequencing assay ERX708566 cell8S9.fastq.gz cell8S9.fastq.gz ERR765422 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765422/ERR765422_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell8S9 cell90 ERS662529 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell90 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell90 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell90 sequencing assay ERX708815 cell90.fastq.gz cell90.fastq.gz ERR765295 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765295/ERR765295_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell90 cell90 ERS662529 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell90 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell90 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell90 sequencing assay ERX708815 cell90.fastq.gz cell90.fastq.gz ERR765295 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765295/ERR765295_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell90 cell91 ERS662427 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell91 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell91 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell91 sequencing assay ERX708713 cell91.fastq.gz cell91.fastq.gz ERR765465 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765465/ERR765465_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell91 cell91 ERS662427 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell91 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell91 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell91 sequencing assay ERX708713 cell91.fastq.gz cell91.fastq.gz ERR765465 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765465/ERR765465_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell91 cell93 ERS662449 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell93 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell93 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell93 sequencing assay ERX708735 cell93.fastq.gz cell93.fastq.gz ERR765380 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765380/ERR765380_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell93 cell93 ERS662449 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell93 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell93 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell93 sequencing assay ERX708735 cell93.fastq.gz cell93.fastq.gz ERR765380 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765380/ERR765380_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell93 cell94 ERS662543 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell94 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell94 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell94 sequencing assay ERX708829 cell94.fastq.gz cell94.fastq.gz ERR765447 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765447/ERR765447_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell94 cell94 ERS662543 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell94 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell94 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell94 sequencing assay ERX708829 cell94.fastq.gz cell94.fastq.gz ERR765447 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765447/ERR765447_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell94 cell95 ERS662279 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell95 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell95 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell95 sequencing assay ERX708565 cell95.fastq.gz cell95.fastq.gz ERR765522 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765522/ERR765522_1.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell95 cell95 ERS662279 Mus musculus medullary thymic epithelial cell PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) embl OK cell95 RNA single cell transcriptome sequencing P-MTAB-43451 Kristin Rattay and Sheena Pinto P-MTAB-43452 Philip Brennecke cell95 PAIRED RANDOM TRANSCRIPTOMIC not applicable OTHER 190 106 5'-3'-3'-5' ERCC92.fa P-MTAB-43453 Philip Brennecke cell95 sequencing assay ERX708565 cell95.fastq.gz cell95.fastq.gz ERR765522 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR765/ERR765522/ERR765522_2.fastq.gz 200 101 PI(neg)CD45(neg)Ly51(neg)EpCAM(pos)MHCII(high) cell95