Source Name	Characteristics[organism]	Characteristics[organism part]	Characteristics[phenotype]	Characteristics[estrogen receptor status]	Characteristics[HER2 status]	Material Type	Protocol REF	Protocol REF	Extract Name	Protocol REF	Labeled Extract Name	Label	Protocol REF	Assay Name	Technology Type	Array Design REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Factor Value[compound]	Factor Value[dose]	Unit[concentration unit]	Factor Value[phenotype]
PT13_ATRA	Homo sapiens	breast	Luminal A	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT13_ATRA	P-MTAB-43287	PT13_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438050_S01_GE1_1105_Oct12_1_3	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438050_S01_GE1_1105_Oct12_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	all trans-retinoic acid	0.1	micromolar	Luminal A
PT13_vehicle	Homo sapiens	breast	Luminal A	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT13_vehicle	P-MTAB-43287	PT13_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438050_S01_GE1_1105_Oct12_2_3	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438050_S01_GE1_1105_Oct12_2_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	DMSO	  	  	Luminal A
PT18_ATRA	Homo sapiens	breast	Luminal A	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT18_ATRA	P-MTAB-43287	PT18_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438050_S01_GE1_1105_Oct12_1_2	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438050_S01_GE1_1105_Oct12_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	all trans-retinoic acid	0.1	micromolar	Luminal A
PT18_vehicle	Homo sapiens	breast	Luminal A	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT18_vehicle	P-MTAB-43287	PT18_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438050_S01_GE1_1105_Oct12_2_2	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438050_S01_GE1_1105_Oct12_2_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	DMSO	  	  	Luminal A
PT22_ATRA	Homo sapiens	breast	triple negative	Negative	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT22_ATRA	P-MTAB-43287	PT22_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438039_S01_GE1_1105_Oct12_1_3	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438039_S01_GE1_1105_Oct12_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	all trans-retinoic acid	0.1	micromolar	triple negative
PT22_vehicle	Homo sapiens	breast	triple negative	Negative	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT22_vehicle	P-MTAB-43287	PT22_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438039_S01_GE1_1105_Oct12_2_3	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438039_S01_GE1_1105_Oct12_2_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	DMSO	  	  	triple negative
PT23_ATRA	Homo sapiens	breast	triple negative	Negative	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT23_ATRA	P-MTAB-43287	PT23_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438039_S01_GE1_1105_Oct12_1_2	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438039_S01_GE1_1105_Oct12_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	all trans-retinoic acid	0.1	micromolar	triple negative
PT23_vehicle	Homo sapiens	breast	triple negative	Negative	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT23_vehicle	P-MTAB-43287	PT23_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438039_S01_GE1_1105_Oct12_2_2	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438039_S01_GE1_1105_Oct12_2_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	DMSO	  	  	triple negative
PT27_ATRA	Homo sapiens	breast	Luminal B	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT27_ATRA	P-MTAB-43287	PT27_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438048_S01_GE1_1105_Oct12_1_2	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438048_S01_GE1_1105_Oct12_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	all trans-retinoic acid	0.1	micromolar	Luminal B
PT27_vehicle	Homo sapiens	breast	Luminal B	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT27_vehicle	P-MTAB-43287	PT27_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438048_S01_GE1_1105_Oct12_2_2	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438048_S01_GE1_1105_Oct12_2_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	DMSO	  	  	Luminal B
PT31_ATRA	Homo sapiens	breast	triple negative	Negative	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT31_ATRA	P-MTAB-43287	PT31_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438039_S01_GE1_1105_Oct12_1_1	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438039_S01_GE1_1105_Oct12_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	all trans-retinoic acid	0.1	micromolar	triple negative
PT31_vehicle	Homo sapiens	breast	triple negative	Negative	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT31_vehicle	P-MTAB-43287	PT31_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438039_S01_GE1_1105_Oct12_2_1	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438039_S01_GE1_1105_Oct12_2_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	DMSO	  	  	triple negative
PT36_ATRA	Homo sapiens	breast	Luminal A	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT36_ATRA	P-MTAB-43287	PT36_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438048_S01_GE1_1105_Oct12_1_3	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438048_S01_GE1_1105_Oct12_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	all trans-retinoic acid	0.1	micromolar	Luminal A
PT36_vehicle	Homo sapiens	breast	Luminal A	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT36_vehicle	P-MTAB-43287	PT36_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438048_S01_GE1_1105_Oct12_2_3	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438048_S01_GE1_1105_Oct12_2_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	DMSO	  	  	Luminal A
PT41_ATRA	Homo sapiens	breast	Luminal A	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT41_ATRA	P-MTAB-43287	PT41_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438049_S01_GE1_1105_Oct12_1_2	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438049_S01_GE1_1105_Oct12_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.1.zip	all trans-retinoic acid	0.1	micromolar	Luminal A
PT41_vehicle	Homo sapiens	breast	Luminal A	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT41_vehicle	P-MTAB-43287	PT41_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438049_S01_GE1_1105_Oct12_2_2	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438049_S01_GE1_1105_Oct12_2_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	DMSO	  	  	Luminal A
PT44_ATRA	Homo sapiens	breast	Luminal A	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT44_ATRA	P-MTAB-43287	PT44_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438048_S01_GE1_1105_Oct12_1_1	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438048_S01_GE1_1105_Oct12_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	all trans-retinoic acid	0.1	micromolar	Luminal A
PT44_vehicle	Homo sapiens	breast	Luminal A	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT44_vehicle	P-MTAB-43287	PT44_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438048_S01_GE1_1105_Oct12_2_1	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438048_S01_GE1_1105_Oct12_2_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	DMSO	  	  	Luminal A
PT50_ATRA	Homo sapiens	breast	triple negative	Negative	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT50_ATRA	P-MTAB-43287	PT50_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438040_S01_GE1_1105_Oct12_1_4	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438040_S01_GE1_1105_Oct12_1_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	all trans-retinoic acid	0.1	micromolar	triple negative
PT50_vehicle	Homo sapiens	breast	triple negative	Negative	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT50_vehicle	P-MTAB-43287	PT50_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438040_S01_GE1_1105_Oct12_2_4	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438040_S01_GE1_1105_Oct12_2_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	DMSO	  	  	triple negative
PT55_ATRA	Homo sapiens	breast	Luminal B	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT55_ATRA	P-MTAB-43287	PT55_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438050_S01_GE1_1105_Oct12_1_1	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438050_S01_GE1_1105_Oct12_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	all trans-retinoic acid	0.1	micromolar	Luminal B
PT55_vehicle	Homo sapiens	breast	Luminal B	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT55_vehicle	P-MTAB-43287	PT55_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438050_S01_GE1_1105_Oct12_2_1	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438050_S01_GE1_1105_Oct12_2_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	DMSO	  	  	Luminal B
PT60_ATRA	Homo sapiens	breast	Luminal A	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT60_ATRA	P-MTAB-43287	PT60_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438040_S01_GE1_1105_Oct12_1_3	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438040_S01_GE1_1105_Oct12_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	all trans-retinoic acid	0.1	micromolar	Luminal A
PT60_vehicle	Homo sapiens	breast	Luminal A	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT60_vehicle	P-MTAB-43287	PT60_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438040_S01_GE1_1105_Oct12_2_3	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438040_S01_GE1_1105_Oct12_2_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	DMSO	  	  	Luminal A
PT61_ATRA	Homo sapiens	breast	Luminal B	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT61_ATRA	P-MTAB-43287	PT61_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438049_S01_GE1_1105_Oct12_1_1	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438049_S01_GE1_1105_Oct12_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	all trans-retinoic acid	0.1	micromolar	Luminal B
PT61_vehicle	Homo sapiens	breast	Luminal B	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT61_vehicle	P-MTAB-43287	PT61_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438049_S01_GE1_1105_Oct12_2_1	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438049_S01_GE1_1105_Oct12_2_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	DMSO	  	  	Luminal B
PT62_ATRA	Homo sapiens	breast	Luminal A	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT62_ATRA	P-MTAB-43287	PT62_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438040_S01_GE1_1105_Oct12_1_2	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438040_S01_GE1_1105_Oct12_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	all trans-retinoic acid	0.1	micromolar	Luminal A
PT62_vehicle	Homo sapiens	breast	Luminal A	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT62_vehicle	P-MTAB-43287	PT62_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438040_S01_GE1_1105_Oct12_2_2	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438040_S01_GE1_1105_Oct12_2_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	DMSO	  	  	Luminal A
PT64_ATRA	Homo sapiens	breast	Luminal B	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT64_ATRA	P-MTAB-43287	PT64_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438040_S01_GE1_1105_Oct12_1_1	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438040_S01_GE1_1105_Oct12_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	all trans-retinoic acid	0.1	micromolar	Luminal B
PT64_vehicle	Homo sapiens	breast	Luminal B	Positive	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT64_vehicle	P-MTAB-43287	PT64_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438040_S01_GE1_1105_Oct12_2_1	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438040_S01_GE1_1105_Oct12_2_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	DMSO	  	  	Luminal B
PT9_ATRA	Homo sapiens	breast	triple negative	Negative	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT9_ATRA	P-MTAB-43287	PT9_ATRA:Cy3	Cy3	P-MTAB-43288	US45102933_253949438041_S01_GE1_1105_Oct12_1_3	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438041_S01_GE1_1105_Oct12_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.2.zip	all trans-retinoic acid	0.1	micromolar	triple negative
PT9_vehicle	Homo sapiens	breast	triple negative	Negative	Negative	organism part	P-MTAB-43285	P-MTAB-43286	PT9_vehicle	P-MTAB-43287	PT9_vehicle:Cy3	Cy3	P-MTAB-43288	US45102933_253949438041_S01_GE1_1105_Oct12_2_3	array assay	A-MEXP-2320	ArrayExpress	US45102933_253949438041_S01_GE1_1105_Oct12_2_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-3313/E-MTAB-3313.raw.3.zip	DMSO	  	  	triple negative