Source Name	Material Type	Provider	Characteristics[organism]	Characteristics[specimen with known storage state]	Characteristics[cell type]	Characteristics[cell line]	Protocol REF	Protocol REF	Protocol REF	Extract Name	Material Type	Protocol REF	Labeled Extract Name	Label	Protocol REF	Assay Name	Array Design REF	Technology Type	Protocol REF	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Factor Value[infect]
Hd1_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Hd1_Hep2	RNA	P-MTAB-38022	Hd1_Hep2	Cy3	P-MTAB-38023	5645764058_A	A-MEXP-2210	array assay	P-MTAB-38024	5645764058_A	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hd mutant infected
Hd2_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Hd2_Hep2	RNA	P-MTAB-38022	Hd2_Hep2	Cy3	P-MTAB-38023	5645764058_C	A-MEXP-2210	array assay	P-MTAB-38024	5645764058_C	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hd mutant infected
Hd3_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Hd3_Hep2	RNA	P-MTAB-38022	Hd3_Hep2	Cy3	P-MTAB-38023	5645764058_E	A-MEXP-2210	array assay	P-MTAB-38024	5645764058_E	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hd mutant infected
Hd1_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Hd1_THP1	RNA	P-MTAB-38022	Hd1_THP1	Cy3	P-MTAB-38023	5645764058_G	A-MEXP-2210	array assay	P-MTAB-38024	5645764058_G	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hd mutant infected
Hd2_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Hd2_THP1	RNA	P-MTAB-38022	Hd2_THP1	Cy3	P-MTAB-38023	5645764058_I	A-MEXP-2210	array assay	P-MTAB-38024	5645764058_I	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hd mutant infected
Hd3_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Hd3_THP1	RNA	P-MTAB-38022	Hd3_THP1	Cy3	P-MTAB-38023	5645764058_K	A-MEXP-2210	array assay	P-MTAB-38024	5645764058_K	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hd mutant infected
Hj1_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Hj1_Hep2	RNA	P-MTAB-38022	Hj1_Hep2	Cy3	P-MTAB-38023	5645764058_B	A-MEXP-2210	array assay	P-MTAB-38024	5645764058_B	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hj mutant infected
Hj2_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Hj2_Hep2	RNA	P-MTAB-38022	Hj2_Hep2	Cy3	P-MTAB-38023	5645764058_D	A-MEXP-2210	array assay	P-MTAB-38024	5645764058_D	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hj mutant infected
Hj3_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Hj3_Hep2	RNA	P-MTAB-38022	Hj3_Hep2	Cy3	P-MTAB-38023	5645764058_F	A-MEXP-2210	array assay	P-MTAB-38024	5645764058_F	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hj mutant infected
Hj1_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Hj1_THP1	RNA	P-MTAB-38022	Hj1_THP1	Cy3	P-MTAB-38023	5645764058_H	A-MEXP-2210	array assay	P-MTAB-38024	5645764058_H	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hj mutant infected
Hj2_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Hj2_THP1	RNA	P-MTAB-38022	Hj2_THP1	Cy3	P-MTAB-38023	5645764058_J	A-MEXP-2210	array assay	P-MTAB-38024	5645764058_J	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hj mutant infected
Hj3_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Hj3_THP1	RNA	P-MTAB-38022	Hj3_THP1	Cy3	P-MTAB-38023	5645764058_L	A-MEXP-2210	array assay	P-MTAB-38024	5645764058_L	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hj mutant infected
Z1_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Z1_Hep2	RNA	P-MTAB-38022	Z1_Hep2	Cy3	P-MTAB-38023	5753685005_A	A-MEXP-2210	array assay	P-MTAB-38024	5753685005_A	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hz66 mutant infected
Z2_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Z2_Hep2	RNA	P-MTAB-38022	Z2_Hep2	Cy3	P-MTAB-38023	5753685005_C	A-MEXP-2210	array assay	P-MTAB-38024	5753685005_C	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hz66 mutant infected
Z3_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Z3_Hep2	RNA	P-MTAB-38022	Z3_Hep2	Cy3	P-MTAB-38023	5753685005_E	A-MEXP-2210	array assay	P-MTAB-38024	5753685005_E	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hz66 mutant infected
Z1_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Z1_THP1	RNA	P-MTAB-38022	Z1_THP1	Cy3	P-MTAB-38023	5753685005_G	A-MEXP-2210	array assay	P-MTAB-38024	5753685005_G	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hz66 mutant infected
Z2_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Z2_THP1	RNA	P-MTAB-38022	Z2_THP1	Cy3	P-MTAB-38023	5753685005_I	A-MEXP-2210	array assay	P-MTAB-38024	5753685005_I	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hz66 mutant infected
Z3_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	Z3_THP1	RNA	P-MTAB-38022	Z3_THP1	Cy3	P-MTAB-38023	5753685005_K	A-MEXP-2210	array assay	P-MTAB-38024	5753685005_K	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi Hz66 mutant infected
fliC1_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	fliC1_Hep2	RNA	P-MTAB-38022	fliC1_Hep2	Cy3	P-MTAB-38023	5753685005_B	A-MEXP-2210	array assay	P-MTAB-38024	5753685005_B	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi DfliC mutant infected
fliC2_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	fliC2_Hep2	RNA	P-MTAB-38022	fliC2_Hep2	Cy3	P-MTAB-38023	5753685005_D	A-MEXP-2210	array assay	P-MTAB-38024	5753685005_D	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi DfliC mutant infected
fliC3_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	fliC3_Hep2	RNA	P-MTAB-38022	fliC3_Hep2	Cy3	P-MTAB-38023	5753685005_F	A-MEXP-2210	array assay	P-MTAB-38024	5753685005_F	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi DfliC mutant infected
fliC1_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	fliC1_THP1	RNA	P-MTAB-38022	fliC1_THP1	Cy3	P-MTAB-38023	5753685005_H	A-MEXP-2210	array assay	P-MTAB-38024	5753685005_H	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi DfliC mutant infected
fliC2_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	fliC2_THP1	RNA	P-MTAB-38022	fliC2_THP1	Cy3	P-MTAB-38023	5753685005_J	A-MEXP-2210	array assay	P-MTAB-38024	5753685005_J	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi DfliC mutant infected
fliC3_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	fliC3_THP1	RNA	P-MTAB-38022	fliC3_THP1	Cy3	P-MTAB-38023	5753685005_L	A-MEXP-2210	array assay	P-MTAB-38024	5753685005_L	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi DfliC mutant infected
invA1_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	invA1_Hep2	RNA	P-MTAB-38022	invA1_Hep2	Cy3	P-MTAB-38023	5753685010_A	A-MEXP-2210	array assay	P-MTAB-38024	5753685010_A	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi DinvA strain infected
invA2_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	invA2_Hep2	RNA	P-MTAB-38022	invA2_Hep2	Cy3	P-MTAB-38023	5753685010_C	A-MEXP-2210	array assay	P-MTAB-38024	5753685010_C	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi DinvA strain infected
invA3_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	invA3_Hep2	RNA	P-MTAB-38022	invA3_Hep2	Cy3	P-MTAB-38023	5753685010_E	A-MEXP-2210	array assay	P-MTAB-38024	5753685010_E	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi DinvA strain infected
invA1_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	invA1_THP1	RNA	P-MTAB-38022	invA1_THP1	Cy3	P-MTAB-38023	5753685010_G	A-MEXP-2210	array assay	P-MTAB-38024	5753685010_G	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi DinvA strain infected
invA2_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	invA2_THP1	RNA	P-MTAB-38022	invA2_THP1	Cy3	P-MTAB-38023	5753685010_I	A-MEXP-2210	array assay	P-MTAB-38024	5753685010_I	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi DinvA strain infected
invA3_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	invA3_THP1	RNA	P-MTAB-38022	invA3_THP1	Cy3	P-MTAB-38023	5753685010_K	A-MEXP-2210	array assay	P-MTAB-38024	5753685010_K	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	Salmonella typhi DinvA strain infected
neg1_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	neg1_Hep2	RNA	P-MTAB-38022	neg1_Hep2	Cy3	P-MTAB-38023	5753685010_B	A-MEXP-2210	array assay	P-MTAB-38024	5753685010_B	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	uninfected
neg2_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	neg2_Hep2	RNA	P-MTAB-38022	neg2_Hep2	Cy3	P-MTAB-38023	5753685010_D	A-MEXP-2210	array assay	P-MTAB-38024	5753685010_D	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	uninfected
neg3_Hep2	Hep2	ATCC	Homo Sapiens	fresh specimen	epithelial	Hep2	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	neg3_Hep2	RNA	P-MTAB-38022	neg3_Hep2	Cy3	P-MTAB-38023	5753685010_F	A-MEXP-2210	array assay	P-MTAB-38024	5753685010_F	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	uninfected
neg1_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	neg1_THP1	RNA	P-MTAB-38022	neg1_THP1	Cy3	P-MTAB-38023	5753685010_H	A-MEXP-2210	array assay	P-MTAB-38024	5753685010_H	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	uninfected
neg2_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	neg2_THP1	RNA	P-MTAB-38022	neg2_THP1	Cy3	P-MTAB-38023	5753685010_J	A-MEXP-2210	array assay	P-MTAB-38024	5753685010_J	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	uninfected
neg3_THP1	THP1	ATCC	Homo Sapiens	fresh specimen	macrophage-like	THP1	P-MTAB-38019	P-MTAB-38020	P-MTAB-38021	neg3_THP1	RNA	P-MTAB-38022	neg3_THP1	Cy3	P-MTAB-38023	5753685010_L	A-MEXP-2210	array assay	P-MTAB-38024	5753685010_L	Fernanda_Schreiber_18_03_11_Sample_Probe_Profile.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2395/E-MTAB-2395.raw.1.zip	uninfected