Source Name	Comment[ENA_SAMPLE]	Material Type	Characteristics[organism]	Characteristics[cell line]	Characteristics[cell type]	Characteristics[sex]	Protocol REF	Protocol REF	Extract Name	Material Type	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[LIBRARY_FRAGMENT_SIZE]	Protocol REF	Performer	Assay Name	Comment[SEQUENCE_LENGTH]	Comment[SPOT_LENGTH]	Technology Type	Comment[ENA_EXPERIMENT]	Scan Name	Comment[SUBMITTED_FILE_NAME]	Comment[ENA_RUN]	Comment[FASTQ_URI]	Comment[MD5]	Protocol REF	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	Factor Value[time]	Unit[time unit]
SHY1_0hr_rep1	ERS400333	cell	Mus musculus	Rex1GFPd2	embryonic stem cell	male	P-MTAB-37404	P-MTAB-37405	SHY1_0hr_rep1	genomic DNA	SINGLE	GENOMIC	OTHER	other	100-300bp	P-MTAB-37406	University of Manchester, UK	SHY1_0hr_rep1	75	75	high_throughput_sequencing	ERX391193	SHY1_0hr.fastq.gz	SHY1_0hr.fastq.gz	ERR424916	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR424/ERR424916/ERR424916.fastq.gz	114615125f6ed739d225a8c35acf8857	P-MTAB-37407	SHY1_0hr_trim1_bowtie_m1n2l28_mm9_random_chrM_chrUn_sorted.bam	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2283/E-MTAB-2283.processed.1.zip	0	hour
SHY1a_0hr_rep2	ERS400334	cell	Mus musculus	Rex1GFPd2	embryonic stem cell	male	P-MTAB-37404	P-MTAB-37405	SHY1a_0hr_rep2	genomic DNA	SINGLE	GENOMIC	OTHER	other	100-300bp	P-MTAB-37406	University of Manchester, UK	SHY1a_0hr_rep2	75	75	high_throughput_sequencing	ERX391194	SHY1a_0hr.fastq.gz	SHY1a_0hr.fastq.gz	ERR424920	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR424/ERR424920/ERR424920.fastq.gz	3340ffee8dd5aec73705b245436bd9c1	P-MTAB-37407	SHY1a_0hr_trim1_bowtie_m1n2l28_mm9_random_chrM_chrUn_sorted.bam	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2283/E-MTAB-2283.processed.2.zip	0	hour
SHY4_8hr_rep1	ERS400332	cell	Mus musculus	Rex1GFPd2	embryonic stem cell	male	P-MTAB-37404	P-MTAB-37405	SHY4_8hr_rep1	genomic DNA	SINGLE	GENOMIC	OTHER	other	100-300bp	P-MTAB-37406	University of Manchester, UK	SHY4_8hr_rep1	75	75	high_throughput_sequencing	ERX391192	SHY4_8hr.fastq.gz	SHY4_8hr.fastq.gz	ERR424915	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR424/ERR424915/ERR424915.fastq.gz	7453f4c4f3a7ac964fb967b22ac47bd0	P-MTAB-37407	SHY4_8hr_trim1_bowtie_m1n2l28_mm9_random_chrM_chrUn_sorted.bam	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2283/E-MTAB-2283.processed.3.zip	8	hour
SHY4a_8hr_rep2	ERS400335	cell	Mus musculus	Rex1GFPd2	embryonic stem cell	male	P-MTAB-37404	P-MTAB-37405	SHY4a_8hr_rep2	genomic DNA	SINGLE	GENOMIC	OTHER	other	100-300bp	P-MTAB-37406	University of Manchester, UK	SHY4a_8hr_rep2	75	75	high_throughput_sequencing	ERX391195	SHY4a_8hr.fastq.gz	SHY4a_8hr.fastq.gz	ERR424919	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR424/ERR424919/ERR424919.fastq.gz	a336fa07407d3ce18c4b95a31f62dfd8	P-MTAB-37407	SHY4a_8hr_trim1_bowtie_m1n2l28_mm9_random_chrM_chrUn_sorted.bam	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2283/E-MTAB-2283.processed.4.zip	8	hour
SHY3_12hr_rep1	ERS400331	cell	Mus musculus	Rex1GFPd2	embryonic stem cell	male	P-MTAB-37404	P-MTAB-37405	SHY3_12hr_rep1	genomic DNA	SINGLE	GENOMIC	OTHER	other	100-300bp	P-MTAB-37406	University of Manchester, UK	SHY3_12hr_rep1	75	75	high_throughput_sequencing	ERX391191	SHY3_12hr.fastq.gz	SHY3_12hr.fastq.gz	ERR424918	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR424/ERR424918/ERR424918.fastq.gz	a2e517f254e608f9ed70b137f774dc09	P-MTAB-37407	SHY3_12hr_trim1_bowtie_m1n2l28_mm9_random_chrM_chrUn_sorted.bam	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2283/E-MTAB-2283.processed.5.zip	12	hour
SHY3a_12hr_rep2	ERS400330	cell	Mus musculus	Rex1GFPd2	embryonic stem cell	male	P-MTAB-37404	P-MTAB-37405	SHY3a_12hr_rep2	genomic DNA	SINGLE	GENOMIC	OTHER	other	100-300bp	P-MTAB-37406	University of Manchester, UK	SHY3a_12hr_rep2	75	75	high_throughput_sequencing	ERX391190	SHY3a_12hr.fastq.gz	SHY3a_12hr.fastq.gz	ERR424917	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR424/ERR424917/ERR424917.fastq.gz	98030c1b074add067c33f3596bb7135d	P-MTAB-37407	SHY3a_12hr_trim1_bowtie_m1n2l28_mm9_random_chrM_chrUn_sorted.bam	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-2283/E-MTAB-2283.processed.6.zip	12	hour