Source Name	Comment[ENA_SAMPLE]	Material Type	Provider	Characteristics[organism]	Characteristics[cell line]	Characteristics[genotype]	Protocol REF	Protocol REF	Protocol REF	Protocol REF	Extract Name	Material Type	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Protocol REF	Performer	Assay Name	Technology Type	Comment[ENA_EXPERIMENT]	Scan Name	Comment[SUBMITTED_FILE_NAME]	Comment[ENA_RUN]	Comment[FASTQ_URI]	Comment[MD5]	Factor Value[RNA interference]
SH-SY5Y_shCtrl_control_replicate1	ERS398743	cell	laboratory cell line	Homo sapiens	SH-SY5Y	wild type	P-MTAB-37270	P-MTAB-37271	P-MTAB-37272	P-MTAB-37273	RNA shCtrl control extract 1	RNA	SINGLE	TRANSCRIPTOMIC	RNA-Seq	cDNA	P-MTAB-37274	Tufts University Core Facility, Boston, USA	SH-SY5Y_shCtrl_control_replicate1	sequencing assay	ERX385539	Sample_GL1.R1.fastq.gz	Sample_GL1.R1.fastq.gz	ERR419243	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419243/ERR419243.fastq.gz	f07945ad2bec580659bf50ce76768804	mock
SH-SY5Y_shCtrl_control_replicate2	ERS398746	cell	laboratory cell line	Homo sapiens	SH-SY5Y	wild type	P-MTAB-37270	P-MTAB-37271	P-MTAB-37272	P-MTAB-37273	RNA shCtrl control extract 2	RNA	SINGLE	TRANSCRIPTOMIC	RNA-Seq	cDNA	P-MTAB-37274	Tufts University Core Facility, Boston, USA	SH-SY5Y_shCtrl_control_replicate2	sequencing assay	ERX385542	Sample_GL2.R1.fastq.gz	Sample_GL2.R1.fastq.gz	ERR419247	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419247/ERR419247.fastq.gz	faa819829658045e86234f007c2c3b6d	mock
SH-SY5Y_shCtrl_control_replicate3	ERS398744	cell	laboratory cell line	Homo sapiens	SH-SY5Y	wild type	P-MTAB-37270	P-MTAB-37271	P-MTAB-37272	P-MTAB-37273	RNA shCtrl control extract 3	RNA	SINGLE	TRANSCRIPTOMIC	RNA-Seq	cDNA	P-MTAB-37274	Tufts University Core Facility, Boston, USA	SH-SY5Y_shCtrl_control_replicate3	sequencing assay	ERX385540	Sample_GL3.R1.fastq.gz	Sample_GL3.R1.fastq.gz	ERR419245	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419245/ERR419245.fastq.gz	149045c0a69f4902fadc3825cdbdaf2b	mock
SH-SY5Y_shUnk_Unk_knockdown_replicate1	ERS398745	cell	laboratory cell line	Homo sapiens	SH-SY5Y	Unk knockdown	P-MTAB-37270	P-MTAB-37271	P-MTAB-37272	P-MTAB-37273	RNA shUnk Unk knockdown extract 1	RNA	SINGLE	TRANSCRIPTOMIC	RNA-Seq	cDNA	P-MTAB-37274	Tufts University Core Facility, Boston, USA	SH-SY5Y_shUnk_Unk_knockdown_replicate1	sequencing assay	ERX385541	Sample_UU1.R1.fastq.gz	Sample_UU1.R1.fastq.gz	ERR419242	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419242/ERR419242.fastq.gz	812b5c73250683256f61d03cae8dcb88	Unk shRNA
SH-SY5Y_shUnk_Unk_knockdown_replicate2	ERS398748	cell	laboratory cell line	Homo sapiens	SH-SY5Y	Unk knockdown	P-MTAB-37270	P-MTAB-37271	P-MTAB-37272	P-MTAB-37273	RNA shUnk Unk knockdown extract 2	RNA	SINGLE	TRANSCRIPTOMIC	RNA-Seq	cDNA	P-MTAB-37274	Tufts University Core Facility, Boston, USA	SH-SY5Y_shUnk_Unk_knockdown_replicate2	sequencing assay	ERX385544	Sample_UU2.R1.fastq.gz	Sample_UU2.R1.fastq.gz	ERR419244	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419244/ERR419244.fastq.gz	ce3a2726bf0c5583067663bca342244a	Unk shRNA
SH-SY5Y_shUnk_Unk_knockdown_replicate3	ERS398747	cell	laboratory cell line	Homo sapiens	SH-SY5Y	Unk knockdown	P-MTAB-37270	P-MTAB-37271	P-MTAB-37272	P-MTAB-37273	RNA shUnk Unk knockdown extract 3	RNA	SINGLE	TRANSCRIPTOMIC	RNA-Seq	cDNA	P-MTAB-37274	Tufts University Core Facility, Boston, USA	SH-SY5Y_shUnk_Unk_knockdown_replicate3	sequencing assay	ERX385543	Sample_UU3.R1.fastq.gz	Sample_UU3.R1.fastq.gz	ERR419246	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419246/ERR419246.fastq.gz	298ed61f761b20f624fc69ba9652317f	Unk shRNA