Source Name	Material Type	Characteristics [organism]	Characteristics [strain or line]	Protocol REF	Term Source REF	Sample Name	Material Type	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Material Type	Label	Protocol REF	Term Source REF	Assay Name	Technology Type	Array Design REF	Protocol REF	Term Source REF	Scan Name	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Comment[Normalization Type]	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Comment[Second Normalization Type]	Derived Array Data Matrix File	Comment [Derived ArrayExpress FTP file]	Factor Value [genotype]
ref3	whole organism	Saccharomyces cerevisiae	BY4742	P-UMCU-50	ArrayExpress	ref3	whole organism	P-UMCU-51	ArrayExpress	ref3.e1	polyA RNA	P-UMCU-38	ArrayExpress	ref3.e1.l140.Cy5 Cy5	synthetic_DNA	Cy5	P-UMCU-39	ArrayExpress	ED_00012831_S01	array assay	A-UMCU-10	P-UMCU-40	ArrayExpress	ED_00012831_S01	P-UMCU-42	ArrayExpress	12870_raw.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.raw.1.zip	P-UMCU-43	ArrayExpress	ED_00012831_S01	loess_group_normalization	12870_derived.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.2.zip	P-UMCU-48	ArrayExpress	tho2-gfp-RS453 vs. wt-RS453	statistical_modeling	final_data_matrix.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.1.zip	refpool
wt-RS453-a	whole organism	Saccharomyces cerevisiae	RS453	P-UMCU-50	ArrayExpress	wt-RS453-a	whole organism	P-UMCU-51	ArrayExpress	wt-RS453-a.e1	polyA RNA	P-UMCU-38	ArrayExpress	wt-RS453-a.e1.l1.Cy3 Cy3	synthetic_DNA	Cy3	P-UMCU-39	ArrayExpress	ED_00012831_S01	array assay	A-UMCU-10	P-UMCU-40	ArrayExpress	ED_00012831_S01	P-UMCU-42	ArrayExpress	12870_raw.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.raw.1.zip	P-UMCU-43	ArrayExpress	ED_00012831_S01	loess_group_normalization	12870_derived.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.2.zip	P-UMCU-48	ArrayExpress	tho2-gfp-RS453 vs. wt-RS453	statistical_modeling	final_data_matrix.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.1.zip	wt-RS453
wt-RS453-b	whole organism	Saccharomyces cerevisiae	RS453	P-UMCU-50	ArrayExpress	wt-RS453-b	whole organism	P-UMCU-51	ArrayExpress	wt-RS453-b.e1	polyA RNA	P-UMCU-38	ArrayExpress	wt-RS453-b.e1.l1.Cy5 Cy5	synthetic_DNA	Cy5	P-UMCU-39	ArrayExpress	ED_00012832_S01	array assay	A-UMCU-10	P-UMCU-40	ArrayExpress	ED_00012832_S01	P-UMCU-42	ArrayExpress	12873_raw.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.raw.1.zip	P-UMCU-43	ArrayExpress	ED_00012832_S01	loess_group_normalization	12873_derived.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.2.zip	P-UMCU-48	ArrayExpress	tho2-gfp-RS453 vs. wt-RS453	statistical_modeling	final_data_matrix.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.1.zip	wt-RS453
ref3	whole organism	Saccharomyces cerevisiae	BY4742	P-UMCU-50	ArrayExpress	ref3	whole organism	P-UMCU-51	ArrayExpress	ref3.e1	polyA RNA	P-UMCU-38	ArrayExpress	ref3.e1.l141.Cy3 Cy3	synthetic_DNA	Cy3	P-UMCU-39	ArrayExpress	ED_00012832_S01	array assay	A-UMCU-10	P-UMCU-40	ArrayExpress	ED_00012832_S01	P-UMCU-42	ArrayExpress	12873_raw.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.raw.1.zip	P-UMCU-43	ArrayExpress	ED_00012832_S01	loess_group_normalization	12873_derived.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.2.zip	P-UMCU-48	ArrayExpress	tho2-gfp-RS453 vs. wt-RS453	statistical_modeling	final_data_matrix.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.1.zip	refpool
ref3	whole organism	Saccharomyces cerevisiae	BY4742	P-UMCU-50	ArrayExpress	ref3	whole organism	P-UMCU-51	ArrayExpress	ref3.e1	polyA RNA	P-UMCU-38	ArrayExpress	ref3.e1.l140.Cy5 Cy5	synthetic_DNA	Cy5	P-UMCU-39	ArrayExpress	ED_00012836_S01	array assay	A-UMCU-10	P-UMCU-40	ArrayExpress	ED_00012836_S01	P-UMCU-42	ArrayExpress	12872_raw.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.raw.1.zip	P-UMCU-43	ArrayExpress	ED_00012836_S01	loess_group_normalization	12872_derived.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.2.zip	P-UMCU-48	ArrayExpress	tho2-tap-RS453 vs. wt-RS453	statistical_modeling	final_data_matrix.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.1.zip	refpool
tho2-tap-RS453-a	whole organism	Saccharomyces cerevisiae	RS453	P-UMCU-50	ArrayExpress	tho2-tap-RS453-a	whole organism	P-UMCU-51	ArrayExpress	tho2-tap-RS453-a.e1	polyA RNA	P-UMCU-38	ArrayExpress	tho2-tap-RS453-a.e1.l1.Cy3 Cy3	synthetic_DNA	Cy3	P-UMCU-39	ArrayExpress	ED_00012836_S01	array assay	A-UMCU-10	P-UMCU-40	ArrayExpress	ED_00012836_S01	P-UMCU-42	ArrayExpress	12872_raw.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.raw.1.zip	P-UMCU-43	ArrayExpress	ED_00012836_S01	loess_group_normalization	12872_derived.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.2.zip	P-UMCU-48	ArrayExpress	tho2-tap-RS453 vs. wt-RS453	statistical_modeling	final_data_matrix.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.1.zip	tho2-tap-RS453
ref3	whole organism	Saccharomyces cerevisiae	BY4742	P-UMCU-50	ArrayExpress	ref3	whole organism	P-UMCU-51	ArrayExpress	ref3.e1	polyA RNA	P-UMCU-38	ArrayExpress	ref3.e1.l141.Cy3 Cy3	synthetic_DNA	Cy3	P-UMCU-39	ArrayExpress	ED_00012837_S01	array assay	A-UMCU-10	P-UMCU-40	ArrayExpress	ED_00012837_S01	P-UMCU-42	ArrayExpress	12875_raw.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.raw.1.zip	P-UMCU-43	ArrayExpress	ED_00012837_S01	loess_group_normalization	12875_derived.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.2.zip	P-UMCU-48	ArrayExpress	tho2-tap-RS453 vs. wt-RS453	statistical_modeling	final_data_matrix.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.1.zip	refpool
tho2-tap-RS453-b	whole organism	Saccharomyces cerevisiae	RS453	P-UMCU-50	ArrayExpress	tho2-tap-RS453-b	whole organism	P-UMCU-51	ArrayExpress	tho2-tap-RS453-b.e1	polyA RNA	P-UMCU-38	ArrayExpress	tho2-tap-RS453-b.e1.l1.Cy5 Cy5	synthetic_DNA	Cy5	P-UMCU-39	ArrayExpress	ED_00012837_S01	array assay	A-UMCU-10	P-UMCU-40	ArrayExpress	ED_00012837_S01	P-UMCU-42	ArrayExpress	12875_raw.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.raw.1.zip	P-UMCU-43	ArrayExpress	ED_00012837_S01	loess_group_normalization	12875_derived.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.2.zip	P-UMCU-48	ArrayExpress	tho2-tap-RS453 vs. wt-RS453	statistical_modeling	final_data_matrix.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1892/E-MTAB-1892.processed.1.zip	tho2-tap-RS453