Source Name Characteristics [CellLine] Term Source REF Term Accession Number Characteristics [Organism] Term Source REF Term Accession Number Characteristics [CellType] Protocol REF Parameter Value [Antibody] Sample Name Protocol REF Extract Name Material Type Protocol REF Labeled Extract Name Label Material Type Protocol REF Protocol REF Parameter Value [spots used for loess curve] Parameter Value [marray version] Parameter Value [signal column] Parameter Value [limma version] Parameter Value [Script version] Parameter Value [R version] Hybridization Name Array Design REF Protocol REF Parameter Value [software version] Factor Value [Antibody] Scan Name Array Data File Comment [ArrayExpress FTP file] Derived Array Data Matrix File Comment [Derived ArrayExpress FTP file] Min6plate1 MIN6 EFO EFO_0002829 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 pancreatic beta cell P-MTAB-5132 Pdx1 (253) ChIP1Pdx1 P-MTAB-5133 LM-PCRChIP1Pdx1 synthetic_DNA P-MTAB-5134 LEX ChIP1-Pdx1 Cy5 Cy5 synthetic_DNA P-MTAB-5135 P-MTAB-5138 all spots except the spike controls, the spots flagged as BAD, the saturated and the Cy3 spots marray 1.14.0 F635 Median limma 2.10.5 3.5.0 2.5.1 ChIP1-Pdx1vsChIP1-IgG Hyb 1 A-MEXP-1668 Pdx1 ChIP1-Pdx1Hyb 1 Scan StoffersPdx1_Exp489_Results.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-134/E-MTAB-134.processed.1.zip Min6plate1 MIN6 EFO EFO_0002829 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 pancreatic beta cell P-MTAB-5132 IgG ChIP1IgG P-MTAB-5133 LM-PCRChIP1IgG synthetic_DNA P-MTAB-5134 LEX ChIP1-IgG Cy3 Cy3 synthetic_DNA P-MTAB-5135 ChIP1-Pdx1vsChIP1-IgG Hyb 1 A-MEXP-1668 P-MTAB-5137 5 IgG 13736611.gpr 13736611.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-134/E-MTAB-134.raw.1.zip Min6plate2 MIN6 EFO EFO_0002829 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 pancreatic beta cell P-MTAB-5132 Pdx1 (253) ChIP2Pdx1 P-MTAB-5133 LM-PCRChIP2Pdx1 synthetic_DNA P-MTAB-5134 LEX ChIP2-Pdx1 Cy5 Cy5 synthetic_DNA P-MTAB-5135 P-MTAB-5138 all spots except the spike controls, the spots flagged as BAD, the saturated and the Cy3 spots marray 1.14.0 F635 Median limma 2.10.5 3.5.0 2.5.1 ChIP1-Pdx1vsChIP1-IgG Hyb 2 A-MEXP-1668 Pdx1 ChIP1-Pdx1vsChIP1-IgG Hyb 2 StoffersPdx1_Exp489_Results.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-134/E-MTAB-134.processed.1.zip Min6plate4 MIN6 EFO EFO_0002829 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 pancreatic beta cell P-MTAB-5132 Pdx1 (253) ChIP4Pdx1 P-MTAB-5133 LM-PCRChIP4Pdx1 synthetic_DNA P-MTAB-5134 LEX ChIP4-Pdx1 Cy3 Cy3 synthetic_DNA P-MTAB-5135 P-MTAB-5138 all spots except the spike controls, the spots flagged as BAD, the saturated and the Cy3 spots marray 1.14.0 F635 Median limma 2.10.5 3.5.0 2.5.1 ChIP4-Pdx1vsChIP4-IgG Hyb 4 A-MEXP-1668 Pdx1 ChIP4-Pdx1 Hyb 4 Scan StoffersPdx1_Exp489_Results.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-134/E-MTAB-134.processed.1.zip Min6plate4 MIN6 EFO EFO_0002829 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 pancreatic beta cell P-MTAB-5132 IgG ChIP4IgG P-MTAB-5133 LM-PCRChIP4IgG synthetic_DNA P-MTAB-5134 LEX ChIP4-IgG Cy5 Cy5 synthetic_DNA P-MTAB-5135 ChIP4-Pdx1vsChIP4-IgG Hyb 4 A-MEXP-1668 P-MTAB-5137 5 IgG 13731076.gpr 13731076.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-134/E-MTAB-134.raw.1.zip Min6plate2 MIN6 EFO EFO_0002829 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 pancreatic beta cell P-MTAB-5132 IgG ChIP2IgG P-MTAB-5133 LM-PCRChIP2IgG synthetic_DNA P-MTAB-5134 LEX ChIP2-IgG Cy3 Cy3 synthetic_DNA P-MTAB-5135 ChIP2-Pdx1vsChIP2-IgG Hyb 2 A-MEXP-1668 P-MTAB-5137 5 IgG 13731074.gpr 13731074.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-134/E-MTAB-134.raw.1.zip Min6plate3 MIN6 EFO EFO_0002829 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 pancreatic beta cell P-MTAB-5132 Pdx1 (253) ChIP3Pdx1 P-MTAB-5133 LM-PCRChIP3Pdx1 synthetic_DNA P-MTAB-5134 LEX ChIP3-Pdx1 Cy5 Cy5 synthetic_DNA P-MTAB-5135 P-MTAB-5138 all spots except the spike controls, the spots flagged as BAD, the saturated and the Cy3 spots marray 1.14.0 F635 Median limma 2.10.5 3.5.0 2.5.1 ChIP3-Pdx1vsChIP3-IgG Hyb 3 A-MEXP-1668 Pdx1 ChIP3-Pdx1 Hyb 3 Scan StoffersPdx1_Exp489_Results.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-134/E-MTAB-134.processed.1.zip Min6plate3 MIN6 EFO EFO_0002829 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 pancreatic beta cell P-MTAB-5132 IgG ChIP3IgG P-MTAB-5133 LM-PCRChIP3IgG synthetic_DNA P-MTAB-5134 LEX ChIP3-IgG 2 Cy3 Cy3 synthetic_DNA P-MTAB-5135 ChIP3-Pdx1vsChIP3-IgG Hyb 3 A-MEXP-1668 P-MTAB-5137 5 IgG 13731075.gpr 13731075.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-134/E-MTAB-134.raw.1.zip Min6plate5 MIN6 EFO EFO_0002829 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 pancreatic beta cell P-MTAB-5132 IgG ChIP5IgG P-MTAB-5133 LM-PCRChIP5IgG synthetic_DNA P-MTAB-5134 LEX ChIP5-IgG Cy5 Cy5 synthetic_DNA P-MTAB-5135 ChIP5-Pdx1vsChIP5-IgG Hyb 5 A-MEXP-1668 P-MTAB-5137 5 IgG 13731077.gpr 13731077.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-134/E-MTAB-134.raw.1.zip Min6plate5 MIN6 EFO EFO_0002829 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 pancreatic beta cell P-MTAB-5132 Pdx1 (253) ChIP5Pdx1 P-MTAB-5133 LM-PCRChIP5Pdx1 synthetic_DNA P-MTAB-5134 LEX ChIP5-Pdx1 Cy3 Cy3 synthetic_DNA P-MTAB-5135 P-MTAB-5138 all spots except the spike controls, the spots flagged as BAD, the saturated and the Cy3 spots marray 1.14.0 F635 Median limma 2.10.5 3.5.0 2.5.1 ChIP5-Pdx1vsChIP5-IgG Hyb 5 A-MEXP-1668 Pdx1 ChIP5-Pdx1 Hyb 5 Scan StoffersPdx1_Exp489_Results.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-134/E-MTAB-134.processed.1.zip