Source Name	Characteristics [Organism]	Characteristics [Sex]	Characteristics [CellType]	Material Type	Protocol REF	Sample Name	Protocol REF	Extract Name	Material Type	Term Source REF	Protocol REF	Labeled Extract Name	Label	Protocol REF	Hybridization Name	Comment[name]	Array design REF	Term Source REF	Array Data Matrix File	Comment [ArrayExpress FTP file]	Protocol REF	Normalization Name	Comment[name]	Derived Array Data Matrix File	Comment [Derived ArrayExpress FTP file]	Protocol REF	Parameter Value [combineReplicates]	Parameter Value [errormodelL]	Parameter Value [useFlagged]	Normalization Name	comment [name]	Protocol REF	Derived Array Data Matrix File	Comment [Derived ArrayExpress FTP file]	Comment[name]	Factor Value [PROTOCOL]
MDA-MB-231 sh-Fra-1(1)	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 sh-Fra-1(1)	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 sh-Fra-1(1)	total_RNA	The MGED Ontology	NKI RNA labeling	Cy3 Labeled Extract MDA-MB-231 sh-Fra-1(1)	Cy3	NKI Tecan array hybridization	NCMF:HYB:15893	MDA231 SH2 vs KH1 rep1	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25932	88_1_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25936	25932, 25933 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	Fra-1(1) silencing
MDA-MB-231 control	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 control	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 control	total_RNA	The MGED Ontology	NKI RNA labeling	Cy5 Labeled Extract MDA-MB-231 control	Cy5	NKI Tecan array hybridization	NCMF:HYB:15893	MDA231 SH2 vs KH1 rep1	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25932	88_1_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25936	25932, 25933 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	control
MDA-MB-231 sh-Fra-1(1)	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 sh-Fra-1(1)	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 sh-Fra-1(1)	total_RNA	The MGED Ontology	NKI RNA labeling	Cy5 Labeled Extract MDA-MB-231 sh-Fra-1(1)	Cy5	NKI Tecan array hybridization	NCMF:HYB:15894	MDA231 KH1 vs SH2 rep1	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25933	88_2_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25936	25932, 25933 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	Fra-1(1) silencing
MDA-MB-231 control	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 control	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 control	total_RNA	The MGED Ontology	NKI RNA labeling	Cy3 Labeled Extract MDA-MB-231 control	Cy3	NKI Tecan array hybridization	NCMF:HYB:15894	MDA231 KH1 vs SH2 rep1	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25933	88_2_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25936	25932, 25933 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	control
MDA-MB-231 sh-Fra-1(2)	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 sh-Fra-1(2)	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 sh-Fra-1(2)	total_RNA	The MGED Ontology	NKI RNA labeling	Cy3 Labeled Extract MDA-MB-231 sh-Fra-1(2)	Cy3	NKI Tecan array hybridization	NCMF:HYB:15895	MDA231 SH7 vs KH1 rep1	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25934	88_3_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25937	25934, 25935 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	Fra-1(2) silencing
MDA-MB-231 control	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 control	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 control	total_RNA	The MGED Ontology	NKI RNA labeling	Cy5 Labeled Extract MDA-MB-231 control	Cy5	NKI Tecan array hybridization	NCMF:HYB:15895	MDA231 SH7 vs KH1 rep1	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25934	88_3_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25937	25934, 25935 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	control
MDA-MB-231 sh-Fra-1(2)	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 sh-Fra-1(2)	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 sh-Fra-1(2)	total_RNA	The MGED Ontology	NKI RNA labeling	Cy5 Labeled Extract MDA-MB-231 sh-Fra-1(2)	Cy5	NKI Tecan array hybridization	NCMF:HYB:15896	MDA231 KH1 vs SH7 rep1	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25935	88_4_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25937	25934, 25935 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	Fra-1(2) silencing
MDA-MB-231 control	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 control	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 control	total_RNA	The MGED Ontology	NKI RNA labeling	Cy3 Labeled Extract MDA-MB-231 control	Cy3	NKI Tecan array hybridization	NCMF:HYB:15896	MDA231 KH1 vs SH7 rep1	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25935	88_4_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25937	25934, 25935 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	control
MDA-MB-231 control	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 control	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 control	total_RNA	The MGED Ontology	NKI RNA labeling	Cy3 Labeled Extract MDA-MB-231 control	Cy3	NKI Tecan array hybridization	NCMF:HYB:15897	MDA231 KH1 vs SH7 rep2	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25938	90_1_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25942	25938, 25939 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	control
MDA-MB-231 sh-Fra-1(2)	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 sh-Fra-1(2)	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 sh-Fra-1(2)	total_RNA	The MGED Ontology	NKI RNA labeling	Cy5 Labeled Extract MDA-MB-231 sh-Fra-1(2)	Cy5	NKI Tecan array hybridization	NCMF:HYB:15897	MDA231 KH1 vs SH7 rep2	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25938	90_1_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25942	25938, 25939 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	Fra-1(2) silencing
MDA-MB-231 control	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 control	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 control	total_RNA	The MGED Ontology	NKI RNA labeling	Cy5 Labeled Extract MDA-MB-231 control	Cy5	NKI Tecan array hybridization	NCMF:HYB:15898	MDA231 SH7 vs KH1 rep2	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25939	90_2_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25942	25938, 25939 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	control
MDA-MB-231 sh-Fra-1(2)	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 sh-Fra-1(2)	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 sh-Fra-1(2)	total_RNA	The MGED Ontology	NKI RNA labeling	Cy3 Labeled Extract MDA-MB-231 sh-Fra-1(2)	Cy3	NKI Tecan array hybridization	NCMF:HYB:15898	MDA231 SH7 vs KH1 rep2	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25939	90_2_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25942	25938, 25939 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	Fra-1(2) silencing
MDA-MB-231 control	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 control	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 control	total_RNA	The MGED Ontology	NKI RNA labeling	Cy3 Labeled Extract MDA-MB-231 control	Cy3	NKI Tecan array hybridization	NCMF:HYB:15899	MDA231 KH1 vs SH2 rep2	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25940	90_3_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25943	25940, 25941 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	control
MDA-MB-231 sh-Fra-1(1)	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 sh-Fra-1(1)	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 sh-Fra-1(1)	total_RNA	The MGED Ontology	NKI RNA labeling	Cy5 Labeled Extract MDA-MB-231 sh-Fra-1(1)	Cy5	NKI Tecan array hybridization	NCMF:HYB:15899	MDA231 KH1 vs SH2 rep2	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25940	90_3_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25943	25940, 25941 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	Fra-1(1) silencing
MDA-MB-231 control	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 control	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 control	total_RNA	The MGED Ontology	NKI RNA labeling	Cy5 Labeled Extract MDA-MB-231 control	Cy5	NKI Tecan array hybridization	NCMF:HYB:15900	MDA231 SH2 vs KH1 rep2	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25941	90_4_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25943	25940, 25941 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	control
MDA-MB-231 sh-Fra-1(1)	Homo sapiens	female	MDA-MB-231	cell	P-MTAB-27627	MDA-MB-231 sh-Fra-1(1)	NKI TRIzol RNA extraction and amplification	Extract MDA-MB-231 sh-Fra-1(1)	total_RNA	The MGED Ontology	NKI RNA labeling	Cy3 Labeled Extract MDA-MB-231 sh-Fra-1(1)	Cy3	NKI Tecan array hybridization	NCMF:HYB:15900	MDA231 SH2 vs KH1 rep2	A-NCMF-6	ArrayExpress	Matrixfile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.raw.1.zip	P-MTAB-27628	NCMF:DBA:25941	90_4_FEX	DerivedMatrixFile_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.1.zip	NKI Standard combination	FALSE	1.3	TRUE	NCMF:DBA:25943	25940, 25941 combined	P-MTAB-27628	DerivedMatrixFile_1_1519.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-1230/E-MTAB-1230.processed.2.zip	Combined	Fra-1(1) silencing