Source Name Characteristics [Age] Characteristics [TimeUnit] Characteristics [Sex] Term Source REF Term Accession Number Characteristics [StrainOrLine] Characteristics [BioSourceType] Characteristics [IndividualGeneticCharacteristics] Characteristics [TargetedCellType] Term Source REF Term Accession Number Characteristics [Organism] Term Source REF Term Accession Number Characteristics [OrganismPart] Term Source REF Term Accession Number Characteristics [GeneticModification] Term Source REF Term Accession Number Characteristics [DevelopmentalStage] Term Source REF Term Accession Number Characteristics [Individual] Characteristics [DiseaseState] Characteristics [CellLine] Protocol REF Protocol REF Parameter Value [media] Parameter Value [start Time] Parameter Value [stop Time] Parameter Value [min temperature] Sample Name Protocol REF Parameter Value [Extracted product] Parameter Value [Amplification] Extract Name Material Type Protocol REF Parameter Value [Amplification] Parameter Value [Amount of nucleic acid labeled] Parameter Value [Label used] Labeled Extract Name Label Material Type Protocol REF Parameter Value [Time] Parameter Value [Quantity of label target used] Parameter Value [Temperature] Parameter Value [Volume] Hybridization Name Array Design REF Comment [Array Design URI] Scan Name Array Data File Comment [ArrayExpress FTP file] Protocol REF Derived Array Data Matrix File Comment [Derived ArrayExpress FTP file] Mus musculus 6 weeks male EFO EFO_0001266 C57Bl6.Relb frozen_sample Relb -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 RELb_2 autoimmune disorder P-MEXP-3345 RNA_SAMPLE#111 P-MEXP-1058 polyA RNA none EXTRACT_MC003_86_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_86_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_86_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3258 E-MEXP-96-raw-data-308240454.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168642 5 weeks male EFO EFO_0001266 C57Bl6.CD3 frozen_sample CD3 epsilon -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 CD3 epsilon delta 5_2 immunodeficient P-MEXP-3345 RNA_SAMPLE#75 P-MEXP-1058 polyA RNA none EXTRACT_MC003_26_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_26_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_26_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3239 E-MEXP-96-raw-data-308239490.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168660 male EFO EFO_0001266 frozen_sample medullary thymic epithelial cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 MTE-1D MTE-1D P-MEXP-3228 P-MEXP-2911 RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 2 mmol/L glutamine, 100 µg/mL streptomycin, 100 U/mL penicillin, and 2 × 10^5 M 2-mercaptoethanol RNA_SAMPLE#31 P-MEXP-1058 polyA RNA none EXTRACT_MC003_64_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_64_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_64_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3220 E-MEXP-96-raw-data-308238527.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168663 male EFO EFO_0001266 frozen_sample thymic medulla cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 6.1.1 P-MEXP-3228 P-MEXP-2911 RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 2 mmol/L glutamine, 100 µg/mL streptomycin, 100 U/mL penicillin, and 2 × 10^5 M 2-mercaptoethanol RNA_SAMPLE#159 P-MEXP-1058 polyA RNA none EXTRACT_MC003_28_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_28_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_28_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3263 E-MEXP-96-raw-data-308240705.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168653 6-8 weeks male EFO EFO_0001266 C57Bl6.RAG1 frozen_sample Rag1 -/- CD25+DN thymocytes Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 CD25_DN immunodeficient P-MEXP-3223 P-MEXP-2912 RNA_SAMPLE#310 P-MEXP-1058 polyA RNA none EXTRACT_MC003_52_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_52_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_52_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3272 E-MEXP-96-raw-data-308241168.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168652 6-8 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT CD8 T-cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 lymph node EFO EFO_0000872 adult EFO EFO_0001272 CD8P P-MEXP-3221 P-MEXP-3220 RPMI 1640, FCS 8%, penicillin 100U/ml, streptomycin 0.1mg/ml, Hepes 10mM pH 7.3, 1mM Sodium pyruvate, 2-beta-mercaptoethanol 5.10-5 M 0 48 37 RNA_SAMPLE#309 P-MEXP-1058 polyA RNA none EXTRACT_MC003_11_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_11_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_11_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3267 E-MEXP-96-raw-data-308240910.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168645 5 weeks male EFO EFO_0001266 C57Bl6.LAT frozen_sample LAT -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 LAT_2 immunodeficient P-MEXP-3345 RNA_SAMPLE#83 P-MEXP-1058 polyA RNA none EXTRACT_MC003_91_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_91_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_91_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3244 E-MEXP-96-raw-data-308239746.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168655 5 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT CD4+ thymocytes Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 CD4SP P-MEXP-3223 P-MEXP-2912 RNA_SAMPLE#318 P-MEXP-1058 polyA RNA none EXTRACT_MC003_09_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_09_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_09_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3277 E-MEXP-96-raw-data-308241424.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168657 5 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT CD8+ thymocytes Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 CD8SP P-MEXP-3223 P-MEXP-2912 RNA_SAMPLE#320 P-MEXP-1058 polyA RNA none EXTRACT_MC003_80_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_80_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_80_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3282 E-MEXP-96-raw-data-308241672.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168647 7 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 C57Bl6 wild type_3 P-MEXP-3345 RNA_SAMPLE#108 P-MEXP-1058 polyA RNA none EXTRACT_MC003_02_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_02_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_02_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3248 E-MEXP-96-raw-data-308239943.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168640 5 weeks male EFO EFO_0001266 C57Bl6.RAG frozen_sample Rag1 -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 Rag1_3 immunodeficient P-MEXP-3345 RNA_SAMPLE#49 P-MEXP-1058 polyA RNA none EXTRACT_MC003_17_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_17_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_17_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3234 E-MEXP-96-raw-data-308239239.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168643 6 weeks male EFO EFO_0001266 C57Bl6.Relb frozen_sample Relb -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 RELb_1 autoimmune disorder P-MEXP-3345 RNA_SAMPLE#110 P-MEXP-1058 polyA RNA none EXTRACT_MC003_22A_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_22A_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_22A_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3253 E-MEXP-96-raw-data-308240197.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168638 8 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 C57Bl6 wild type_1 P-MEXP-3345 RNA_SAMPLE#36 P-MEXP-1058 polyA RNA none EXTRACT_MC003_83_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_83_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_83_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3229 E-MEXP-96-raw-data-308238990.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168656 5 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT total DN thymocytes Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 TDN P-MEXP-3223 P-MEXP-3226 RPMI 1640 1% FCS RNA_SAMPLE#319 P-MEXP-1058 polyA RNA none EXTRACT_MC003_96_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_96_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_96_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3280 E-MEXP-96-raw-data-308241573.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168651 5 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT CD4+ T-cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 lymph node EFO EFO_0000872 adult EFO EFO_0001272 CD4P P-MEXP-3211 P-MEXP-3210 RPMI 10%FCS 48 37 RNA_SAMPLE#306 P-MEXP-1058 polyA RNA none EXTRACT_MC003_58_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_58_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_58_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3266 E-MEXP-96-raw-data-308240857.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168659 frozen_sample LMTK- fibroblast EFO http://purl.org/obo/owl/CL#CL_0000057 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 adult EFO EFO_0001272 P-MEXP-3228 P-MEXP-2911 RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 2 mmol/L glutamine, 100 µg/mL streptomycin, 100 U/mL penicillin, and 2 × 10^5 M 2-mercaptoethanol RNA_SAMPLE#30 P-MEXP-1058 polyA RNA none EXTRACT_MC003_37_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_37_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_37_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3218 E-MEXP-96-raw-data-308238339.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168643 6 weeks male EFO EFO_0001266 C57Bl6.Relb frozen_sample Relb -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 RELb_1 autoimmune disorder P-MEXP-3345 RNA_SAMPLE#110 P-MEXP-1058 polyA RNA none EXTRACT_MC003_61_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_61_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_61_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3254 E-MEXP-96-raw-data-308240246.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168637 6 weeks male EFO EFO_0001266 C57Bl6.RAG frozen_sample Rag1 -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 Rag1_1 immunodeficient P-MEXP-3345 RNA_SAMPLE#35 P-MEXP-1058 polyA RNA none EXTRACT_MC003_79_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACTMC003_79_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_79_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3227 E-MEXP-96-raw-data-308238885.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168645 5 weeks male EFO EFO_0001266 C57Bl6.LAT frozen_sample LAT -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 LAT_2 immunodeficient P-MEXP-3345 RNA_SAMPLE#83 P-MEXP-1058 polyA RNA none EXTRACT_MC003_43_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_43_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_43_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3243 E-MEXP-96-raw-data-308239691.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168647 7 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 C57Bl6 wild type_3 P-MEXP-3345 RNA_SAMPLE#108 P-MEXP-1058 polyA RNA none EXTRACT_MC003_42_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_42_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_42_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3249 E-MEXP-96-raw-data-308239995.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168654 5 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT CD4+CD8+ thymocytes Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 CD4CD8DP P-MEXP-3223 P-MEXP-2912 RNA_SAMPLE#315 P-MEXP-1058 polyA RNA none EXTRACT_MC003_20_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_20_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_20_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3275 E-MEXP-96-raw-data-308241324.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168642 5 weeks male EFO EFO_0001266 C57Bl6.CD3 frozen_sample CD3 epsilon -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 CD3 epsilon delta 5_2 immunodeficient P-MEXP-3345 RNA_SAMPLE#75 P-MEXP-1058 polyA RNA none EXTRACT_MC003_10_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_10_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_10_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3238 E-MEXP-96-raw-data-308239441.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168653 6-8 weeks male EFO EFO_0001266 C57Bl6.RAG1 frozen_sample Rag1 -/- CD25+DN thymocytes Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 CD25_DN immunodeficient P-MEXP-3223 P-MEXP-2912 RNA_SAMPLE#310 P-MEXP-1058 polyA RNA none EXTRACT_MC003_45_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_45_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_45_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3271 E-MEXP-96-raw-data-308241117.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168639 4 weeks male EFO EFO_0001266 C57Bl6.RAG frozen_sample Rag1 -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 Rag1_2 immunodeficient P-MEXP-3345 RNA_SAMPLE#37 P-MEXP-1058 polyA RNA none EXTRACT_MC003_70_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_70_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_70_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3232 E-MEXP-96-raw-data-308239140.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168664 5 weeks male EFO EFO_0001266 frozen_sample dendritic cell EFO http://purl.org/obo/owl/CL#CL_0000451 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 bone marrow EFO http://purl.org/obo/owl/CL#CL_0002092 adult EFO EFO_0001272 P-MEXP-3228 P-MEXP-2911 RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 2 mmol/L glutamine, 100 µg/mL streptomycin, 100 U/mL penicillin, and 2 × 10^5 M 2-mercaptoethanol RNA_SAMPLE#186 P-MEXP-1058 polyA RNA none EXTRACT_MC003_25_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_25_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_25_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3264 E-MEXP-96-raw-data-308240756.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168654 5 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT CD4+CD8+ thymocytes Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 CD4CD8DP P-MEXP-3223 P-MEXP-2912 RNA_SAMPLE#315 P-MEXP-1058 polyA RNA none EXTRACT_MC003_50_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_50_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_50_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3276 E-MEXP-96-raw-data-308241375.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168653 6-8 weeks male EFO EFO_0001266 C57Bl6.RAG1 frozen_sample Rag1 -/- CD25+DN thymocytes Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 CD25_DN immunodeficient P-MEXP-3223 P-MEXP-2912 RNA_SAMPLE#310 P-MEXP-1058 polyA RNA none EXTRACT_MC003_35_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_35_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_35_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3270 E-MEXP-96-raw-data-308241065.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168641 5 weeks male EFO EFO_0001266 C57Bl6.CD3 frozen_sample CD3 epsilon -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 CD3 epsilon delta 5_1 immunodeficient P-MEXP-3345 RNA_SAMPLE#74 P-MEXP-1058 polyA RNA none EXTRACT_MC003_60_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_60_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_60_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3237 E-MEXP-96-raw-data-308239392.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168666 male EFO EFO_0001266 frozen_sample macrophage EFO http://purl.org/obo/owl/CL#CL_0000235 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 adult EFO EFO_0001272 P388D1 P-MEXP-3228 P-MEXP-2911 RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 2 mmol/L glutamine, 100 µg/mL streptomycin, 100 U/mL penicillin, and 2 × 10^5 M 2-mercaptoethanol RNA_SAMPLE#43 P-MEXP-1058 polyA RNA none EXTRACT_MC003_69_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_69_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_69_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3233 E-MEXP-96-raw-data-308239189.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168638 8 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 C57Bl6 wild type_1 P-MEXP-3345 RNA_SAMPLE#36 P-MEXP-1058 polyA RNA none EXTRACT_MC003_39_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_39_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_39_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3228 E-MEXP-96-raw-data-308238938.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168651 5 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT CD4+ T-cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 lymph node EFO EFO_0000872 adult EFO EFO_0001272 CD4P P-MEXP-3211 P-MEXP-3210 RPMI 10%FCS 48 37 RNA_SAMPLE#306 P-MEXP-1058 polyA RNA none EXTRACT_MC003_08_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_08_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_08_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3265 E-MEXP-96-raw-data-308240806.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168635 4 weeks male EFO EFO_0001266 C57Bl6.TCRa frozen_sample TCR alpha -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 TCR alpha_1 immunodeficient P-MEXP-3345 RNA_SAMPLE#32 P-MEXP-1058 polyA RNA none EXTRACT_MC003_22B_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_22B_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_22B_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3221 E-MEXP-96-raw-data-308238576.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168650 6 weeks male EFO EFO_0001266 C57Bl6.Relb frozen_sample Relb -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 RELb_3 autoimmune disorder P-MEXP-3345 RNA_SAMPLE#112 P-MEXP-1058 polyA RNA none EXTRACT_MC003_05_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_05_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_05_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3259 E-MEXP-96-raw-data-308240505.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168657 5 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT CD8+ thymocytes Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 CD8SP P-MEXP-3223 P-MEXP-2912 RNA_SAMPLE#320 P-MEXP-1058 polyA RNA none EXTRACT_MC003_73_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_73_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_73_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3281 E-MEXP-96-raw-data-308241623.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168661 5 weeks frozen_sample thymic stroma cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 427.1 P-MEXP-3228 P-MEXP-2911 RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 2 mmol/L glutamine, 100 µg/mL streptomycin, 100 U/mL penicillin, and 2 × 10^5 M 2-mercaptoethanol RNA_SAMPLE#156 P-MEXP-1058 polyA RNA none EXTRACT_MC003_04_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_04_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_04_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3261 E-MEXP-96-raw-data-308240603.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168639 4 weeks male EFO EFO_0001266 C57Bl6.RAG frozen_sample Rag1 -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 Rag1_2 immunodeficient P-MEXP-3345 RNA_SAMPLE#37 P-MEXP-1058 polyA RNA none EXTRACT_MC003_67_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_67_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_67_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3231 E-MEXP-96-raw-data-308239090.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168644 5 weeks male EFO EFO_0001266 C57Bl6.LAT frozen_sample LAT -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 LAT_1 immunodeficient P-MEXP-3345 RNA_SAMPLE#82 P-MEXP-1058 polyA RNA none EXTRACT_MC003_85_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_85_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_85_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3242 E-MEXP-96-raw-data-308239640.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168656 5 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT total DN thymocytes Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 TDN P-MEXP-3223 P-MEXP-3226 RPMI 1640 1% FCS RNA_SAMPLE#319 P-MEXP-1058 polyA RNA none EXTRACT_MC003_54_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_54_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_54_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3279 E-MEXP-96-raw-data-308241523.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168647 7 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 C57Bl6 wild type_3 P-MEXP-3345 RNA_SAMPLE#108 P-MEXP-1058 polyA RNA none EXTRACT_MC003_51_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_51_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_51_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3250 E-MEXP-96-raw-data-308240045.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168636 4 weeks male EFO EFO_0001266 C57Bl6.TCRa frozen_sample TCR alpha -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 TCR alpha_2 immunodeficient P-MEXP-3345 RNA_SAMPLE#33 P-MEXP-1058 polyA RNA none EXTRACTMC003_63_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_63_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_63_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3226 E-MEXP-96-raw-data-308238833.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168646 4 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 C57Bl6 wild type_2 P-MEXP-3345 RNA_SAMPLE#107 P-MEXP-1058 polyA RNA none EXTRACT_MC003_16_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_16_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_16_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3245 E-MEXP-96-raw-data-308239797.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168635 4 weeks male EFO EFO_0001266 C57Bl6.TCRa frozen_sample TCR alpha -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 TCR alpha_1 immunodeficient P-MEXP-3345 RNA_SAMPLE#32 P-MEXP-1058 polyA RNA none EXTRACT_MC003_48_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_48_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_48_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3223 E-MEXP-96-raw-data-308238678.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168643 6 weeks male EFO EFO_0001266 C57Bl6.Relb frozen_sample Relb -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 RELb_1 autoimmune disorder P-MEXP-3345 RNA_SAMPLE#110 P-MEXP-1058 polyA RNA none EXTRACT_MC003_71_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_71_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_71_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3255 E-MEXP-96-raw-data-308240300.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168635 4 weeks male EFO EFO_0001266 C57Bl6.TCRa frozen_sample TCR alpha -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 TCR alpha_1 immunodeficient P-MEXP-3345 RNA_SAMPLE#32 P-MEXP-1058 polyA RNA none EXTRACT_MC003_46_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_46_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_46_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3222 E-MEXP-96-raw-data-308238628.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168653 6-8 weeks male EFO EFO_0001266 C57Bl6.RAG1 frozen_sample Rag1 -/- CD25+DN thymocytes Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 CD25_DN immunodeficient P-MEXP-3223 P-MEXP-2912 RNA_SAMPLE#310 P-MEXP-1058 polyA RNA none EXTRACT_MC003_03_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_03_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_03_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3269 E-MEXP-96-raw-data-308241013.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168641 5 weeks male EFO EFO_0001266 C57Bl6.CD3 frozen_sample CD3 epsilon -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 CD3 epsilon delta 5_1 immunodeficient P-MEXP-3345 RNA_SAMPLE#74 P-MEXP-1058 polyA RNA none EXTRACT_MC003_47_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_47_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_47_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3236 E-MEXP-96-raw-data-308239342.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168644 5 weeks male EFO EFO_0001266 C57Bl6.LAT frozen_sample LAT -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 LAT_1 immunodeficient P-MEXP-3345 RNA_SAMPLE#82 P-MEXP-1058 polyA RNA none EXTRACT_MC003_40_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_40_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_40_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3241 E-MEXP-96-raw-data-308239590.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168650 6 weeks male EFO EFO_0001266 C57Bl6.Relb frozen_sample Relb -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 RELb_3 autoimmune disorder P-MEXP-3345 RNA_SAMPLE#112 P-MEXP-1058 polyA RNA none EXTRACT_MC003_59_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_59_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_59_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3260 E-MEXP-96-raw-data-308240554.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168665 male EFO EFO_0001266 frozen_sample dendritic cell EFO http://purl.org/obo/owl/CL#CL_0000451 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 bone marrow EFO http://purl.org/obo/owl/CL#CL_0002092 adult EFO EFO_0001272 C57Bl6 DC2.4 P-MEXP-3228 P-MEXP-2911 RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 2 mmol/L glutamine, 100 µg/mL streptomycin, 100 U/mL penicillin, and 2 × 10^5 M 2-mercaptoethanol RNA_SAMPLE#311 P-MEXP-1058 polyA RNA none EXTRACT_MC003_32_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_32_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_32_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3274 E-MEXP-96-raw-data-308241272.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168662 male EFO EFO_0001266 frozen_sample thymic stroma cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 1308.1 P-MEXP-3228 P-MEXP-2911 RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 2 mmol/L glutamine, 100 µg/mL streptomycin, 100 U/mL penicillin, and 2 × 10^5 M 2-mercaptoethanol RNA_SAMPLE#158 P-MEXP-1058 polyA RNA none EXTRACT_MC003_90_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_90_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_90_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3262 E-MEXP-96-raw-data-308240655.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168635 4 weeks male EFO EFO_0001266 C57Bl6.TCRa frozen_sample TCR alpha -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 TCR alpha_1 immunodeficient P-MEXP-3345 RNA_SAMPLE#32 P-MEXP-1058 polyA RNA none EXTRACT_MC003_84_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_84_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_84_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3224 E-MEXP-96-raw-data-308238731.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168653 6-8 weeks male EFO EFO_0001266 C57Bl6.RAG1 frozen_sample Rag1 -/- CD25+DN thymocytes Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 CD25_DN immunodeficient P-MEXP-3223 P-MEXP-2912 RNA_SAMPLE#310 P-MEXP-1058 polyA RNA none EXTRACT_MC003_57_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_57_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_57_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3273 E-MEXP-96-raw-data-308241220.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168646 4 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 C57Bl6 wild type_2 P-MEXP-3345 RNA_SAMPLE#107 P-MEXP-1058 polyA RNA none EXTRACT_MC003_56_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_56_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_56_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3246 E-MEXP-96-raw-data-308239842.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168658 5 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT naive CD4 T-cell Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 lymph node EFO EFO_0000872 adult EFO EFO_0001272 TCD4naive P-MEXP-3206 P-MEXP-3205 RPMI 1640 1% FCS RNA_SAMPLE#321 P-MEXP-1058 polyA RNA none EXTRACT_MC003_65_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_65_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_65_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3283 E-MEXP-96-raw-data-308241722.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168652 6-8 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT CD8 T-cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 lymph node EFO EFO_0000872 adult EFO EFO_0001272 CD8P P-MEXP-3221 P-MEXP-3220 RPMI 1640, FCS 8%, penicillin 100U/ml, streptomycin 0.1mg/ml, Hepes 10mM pH 7.3, 1mM Sodium pyruvate, 2-beta-mercaptoethanol 5.10-5 M 0 48 37 RNA_SAMPLE#309 P-MEXP-1058 polyA RNA none EXTRACT_MC003_30_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_30_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_30_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3268 E-MEXP-96-raw-data-308240962.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168660 male EFO EFO_0001266 frozen_sample medullary thymic epithelial cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 MTE-1D MTE-1D P-MEXP-3228 P-MEXP-2911 RPMI 1640 supplemented with 10% heat-inactivated fetal calf serum, 2 mmol/L glutamine, 100 µg/mL streptomycin, 100 U/mL penicillin, and 2 × 10^5 M 2-mercaptoethanol RNA_SAMPLE#31 P-MEXP-1058 polyA RNA none EXTRACT_MC003_53_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_53_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_53_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3219 E-MEXP-96-raw-data-308238477.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus 6 weeks male EFO EFO_0001266 C57Bl6.Relb frozen_sample Relb -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 RELb_2 autoimmune disorder P-MEXP-3345 RNA_SAMPLE#111 P-MEXP-1058 polyA RNA none EXTRACT_MC003_66_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_66_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_66_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3257 E-MEXP-96-raw-data-308240404.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168648 4 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 C57Bl6 wild type_4 P-MEXP-3345 RNA_SAMPLE#109 P-MEXP-1058 polyA RNA none EXTRACT_MC003_92_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_92_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_92_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3251 E-MEXP-96-raw-data-308240096.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168636 4 weeks male EFO EFO_0001266 C57Bl6.TCRa frozen_sample TCR alpha -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 TCR alpha_2 immunodeficient P-MEXP-3345 RNA_SAMPLE#33 P-MEXP-1058 polyA RNA none EXTRACT_MC003_36_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_36_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_36_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3225 E-MEXP-96-raw-data-308238781.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168642 5 weeks male EFO EFO_0001266 C57Bl6.CD3 frozen_sample CD3 epsilon -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 CD3 epsilon delta 5_2 immunodeficient P-MEXP-3345 RNA_SAMPLE#75 P-MEXP-1058 polyA RNA none EXTRACT_MC003_44_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_44_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_44_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3240 E-MEXP-96-raw-data-308239541.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168643 6 weeks male EFO EFO_0001266 C57Bl6.Relb frozen_sample Relb -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 RELb_1 autoimmune disorder P-MEXP-3345 RNA_SAMPLE#110 P-MEXP-1058 polyA RNA none EXTRACT_MC003_82_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_82_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_82_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3256 E-MEXP-96-raw-data-308240353.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168648 4 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 C57Bl6 wild type_4 P-MEXP-3345 RNA_SAMPLE#109 P-MEXP-1058 polyA RNA none EXTRACT_MC003_95_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_95_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_95_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3252 E-MEXP-96-raw-data-308240147.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168639 4 weeks male EFO EFO_0001266 C57Bl6.RAG frozen_sample Rag1 -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 Rag1_2 immunodeficient P-MEXP-3345 RNA_SAMPLE#37 P-MEXP-1058 polyA RNA none EXTRACT_MC003_29_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_29_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_29_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3230 E-MEXP-96-raw-data-308239041.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168640 5 weeks male EFO EFO_0001266 C57Bl6.RAG frozen_sample Rag1 -/- thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 gene_knock_out EFO EFO_0000506 adult EFO EFO_0001272 Rag1_3 immunodeficient P-MEXP-3345 RNA_SAMPLE#49 P-MEXP-1058 polyA RNA none EXTRACT_MC003_74_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_74_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_74_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3235 E-MEXP-96-raw-data-308239291.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168646 4 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT thymus cells Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 C57Bl6 wild type_2 P-MEXP-3345 RNA_SAMPLE#107 P-MEXP-1058 polyA RNA none EXTRACT_MC003_72_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_72_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_72_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3247 E-MEXP-96-raw-data-308239895.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip Mus musculus__S:BioSource:MEXP:168655 5 weeks male EFO EFO_0001266 C57Bl6 frozen_sample WT CD4+ thymocytes Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 thymus EFO EFO_0000860 adult EFO EFO_0001272 CD4SP P-MEXP-3223 P-MEXP-2912 RNA_SAMPLE#318 P-MEXP-1058 polyA RNA none EXTRACT_MC003_49_1 total_RNA P-MEXP-1059 none 2.5 33P LABELEXTRACT_MC003_49_1 33P total_RNA P-MEXP-1064 48 2.5 68 500 HYBRID_MC003_49_1 A-MEXP-57 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-57 MBA:MEXP:3278 E-MEXP-96-raw-data-308241473.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.raw.1.zip P-MEXP-3242 E-MEXP-96-processed-data-1341962474.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-96/E-MEXP-96.processed.1.zip