Source Name	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [age]	Unit [TimeUnit]	Characteristics [developmental stage]	Term Source REF	Term Accession Number	Characteristics [sex]	Term Source REF	Term Accession Number	Characteristics [genotype]	Characteristics [individual]	Characteristics [organism part]	Term Source REF	Term Accession Number	Characteristics [disease]	Characteristics [strain]	Characteristics [specimen with known storage state]	Characteristics [genetic modification]	Term Source REF	Term Accession Number	Provider	Sample Name	Protocol REF	Parameter Value [Extracted product]	Parameter Value [Amplification]	Extract Name	Material Type	Protocol REF	Labeled Extract Name	Label	Material Type	Protocol REF	Hybridization Name	Array Design REF	Protocol REF	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Factor Value [genotype]
ERCC1-1	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	15	day	neonate	EFO	EFO_0001372	male	EFO	EFO_0001266	Ercc1 knock-out	1.1	liver	EFO	EFO_0000887	DNA repair deficiency	BL/6/FVB	frozen sample	gene knock out	EFO	EFO_0000506	Laura Niedernhofer	ERCC1-1	P-MEXP-381	total RNA	none	E_ERCC1-1	total_RNA	P-AFFY-2	L_ERCC1-1	biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_ERCC1-1	A-AFFY-45	P-AFFY-6	H_ERCC1-1	ERCC1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-834/E-MEXP-834.raw.1.zip	Ercc1 knock-out
ERCC1-2	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	15	day	neonate	EFO	EFO_0001372	male	EFO	EFO_0001266	Ercc1 knock-out	1.2	liver	EFO	EFO_0000887	DNA repair deficiency	BL/6/FVB	frozen sample	gene knock out	EFO	EFO_0000506	Laura Niedernhofer	ERCC1-2	P-MEXP-381	total RNA	none	E_ERCC1-2	total_RNA	P-AFFY-2	L_ERCC1-2	biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_ERCC1-2	A-AFFY-45	P-AFFY-6	H_ERCC1-2	ERCC2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-834/E-MEXP-834.raw.1.zip	Ercc1 knock-out
ERCC1-3	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	15	day	neonate	EFO	EFO_0001372	male	EFO	EFO_0001266	Ercc1 knock-out	1.3	liver	EFO	EFO_0000887	DNA repair deficiency	BL/6/FVB	frozen sample	gene knock out	EFO	EFO_0000506	Laura Niedernhofer	ERCC1-3	P-MEXP-381	total RNA	none	E_ERCC1-3	total_RNA	P-AFFY-2	L_ERCC1-3	biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_ERCC1-3	A-AFFY-45	P-AFFY-6	H_ERCC1-3	ERCC3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-834/E-MEXP-834.raw.1.zip	Ercc1 knock-out
ERCC1-4	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	15	day	neonate	EFO	EFO_0001372	male	EFO	EFO_0001266	Ercc1 knock-out	1.4	liver	EFO	EFO_0000887	DNA repair deficiency	BL/6/FVB	frozen sample	gene knock out	EFO	EFO_0000506	Laura Niedernhofer	ERCC1-4	P-MEXP-381	total RNA	none	E_ERCC1-4	total_RNA	P-AFFY-2	L_ERCC1-4	biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_ERCC1-4	A-AFFY-45	P-AFFY-6	H_ERCC1-4	ERCC4.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-834/E-MEXP-834.raw.1.zip	Ercc1 knock-out
ERCC1-5	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	15	day	neonate	EFO	EFO_0001372	male	EFO	EFO_0001266	Ercc1 knock-out	1.5	liver	EFO	EFO_0000887	DNA repair deficiency	BL/6/FVB	frozen sample	gene knock out	EFO	EFO_0000506	Laura Niedernhofer	ERCC1-5	P-MEXP-381	total RNA	none	E_ERCC1-5	total_RNA	P-AFFY-2	L_ERCC1-5	biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_ERCC1-5	A-AFFY-45	P-AFFY-6	H_ERCC1-5	ERCC5.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-834/E-MEXP-834.raw.1.zip	Ercc1 knock-out
ERCC1-6	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	15	day	neonate	EFO	EFO_0001372	male	EFO	EFO_0001266	Ercc1 knock-out	1.6	liver	EFO	EFO_0000887	DNA repair deficiency	BL/6/FVB	frozen sample	gene knock out	  	  	Laura Niedernhofer	ERCC1-6	P-MEXP-381	total RNA	none	E_ERCC1-6	total_RNA	P-AFFY-2	L_ERCC1-6	biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_ERCC1-6	A-AFFY-45	P-AFFY-6	H_ERCC1-6	ERCC6.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-834/E-MEXP-834.raw.1.zip	Ercc1 knock-out
WT1	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	15	day	neonate	EFO	EFO_0001372	male	EFO	EFO_0001266	wild type	1	liver	EFO	EFO_0000887	normal	BL/6/FVB	frozen sample	none	  	  	Laura Niedernhofer	WT1	P-MEXP-381	total RNA	none	E_WT1	total_RNA	P-AFFY-2	L_WT1	biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_WT1	A-AFFY-45	P-AFFY-6	H_WT1	WT7.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-834/E-MEXP-834.raw.1.zip	wild type
WT2	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	15	day	neonate	EFO	EFO_0001372	male	EFO	EFO_0001266	wild type	2	liver	EFO	EFO_0000887	normal	BL/6/FVB	frozen sample	none	  	  	Laura Niedernhofer	WT2	P-MEXP-381	total RNA	none	E_WT2	total_RNA	P-AFFY-2	L_WT2	biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_WT2	A-AFFY-45	P-AFFY-6	H_WT2	WT8.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-834/E-MEXP-834.raw.1.zip	wild type
WT3	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	15	day	neonate	EFO	EFO_0001372	male	EFO	EFO_0001266	wild type	3	liver	EFO	EFO_0000887	normal	BL/6/FVB	frozen sample	none	  	  	Laura Niedernhofer	WT3	P-MEXP-381	total RNA	none	E_WT3	total_RNA	P-AFFY-2	L_WT3	biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_WT3	A-AFFY-45	P-AFFY-6	H_WT3	WT9.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-834/E-MEXP-834.raw.1.zip	wild type
WT4	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	15	day	neonate	EFO	EFO_0001372	male	EFO	EFO_0001266	wild type	4	liver	EFO	EFO_0000887	normal	BL/6/FVB	frozen sample	none	  	  	Laura Niedernhofer	WT4	P-MEXP-381	total RNA	none	E_WT4	total_RNA	P-AFFY-2	L_WT4	biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_WT4	A-AFFY-45	P-AFFY-6	H_WT4	WT10.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-834/E-MEXP-834.raw.1.zip	wild type
WT5	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	15	day	neonate	EFO	EFO_0001372	male	EFO	EFO_0001266	wild type	5	liver	EFO	EFO_0000887	normal	BL/6/FVB	frozen sample	none	  	  	Laura Niedernhofer	WT5	P-MEXP-381	total RNA	none	E_WT5	total_RNA	P-AFFY-2	L_WT5	biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_WT5	A-AFFY-45	P-AFFY-6	H_WT5	WT11.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-834/E-MEXP-834.raw.1.zip	wild type
WT6	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	15	day	neonate	EFO	EFO_0001372	male	EFO	EFO_0001266	wild type	6	liver	EFO	EFO_0000887	normal	BL/6/FVB	frozen sample	none	  	  	Laura Niedernhofer	WT6	P-MEXP-381	total RNA	none	E_WT6	total_RNA	P-AFFY-2	L_WT6	biotin	total_RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_WT6	A-AFFY-45	P-AFFY-6	H_WT6	WT12.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-834/E-MEXP-834.raw.1.zip	wild type