Source Name	Characteristics [Organism]	Term Source REF	Term Accession Number	Characteristics [CellLine]	Term Source REF	Term Accession Number	Characteristics [BioSourceType]	Provider	Protocol REF	Sample Name	Protocol REF	Parameter Value [Extracted product]	Parameter Value [Amplification]	Extract Name	Material Type	Protocol REF	Parameter Value [Label used]	Parameter Value [Amplification]	Parameter Value [Amount of nucleic acid labeled]	Labeled Extract Name	Label	Material Type	Protocol REF	Hybridization Name	Array Design REF	Protocol REF	Factor Value [time]	Unit [TimeUnit]	Scan Name	Array Data File	Comment [ArrayExpress FTP file]
encode6to8hrrep2	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode6to8hrrep2	P-MEXP-23968	genomic DNA	none	E_encode6to8hrrep2	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode6to8hrrep2	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode6to8hrrep2	A-AFFY-61	P-AFFY-6	6 to 8	h	H_encode6to8hrrep2	encode6to8hrrep2.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode4to6hrrep1	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode4to6hrrep1	P-MEXP-23968	genomic DNA	none	E_encode4to6hrrep1	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode4to6hrrep1	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode4to6hrrep1	A-AFFY-61	P-AFFY-6	4 to 6	h	H_encode4to6hrrep1	encode4to6hrrep1.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode0to10hrrep1	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode0to10hrrep1	P-MEXP-23968	genomic DNA	none	E_encode0to10hrrep1	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode0to10hrrep1	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode0to10hrrep1	A-AFFY-61	P-AFFY-6	0 to 10	h	H_encode0to10hrrep1	encode0to10hrrep1.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode2to4hrrep1	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode2to4hrrep1	P-MEXP-23968	genomic DNA	none	E_encode2to4hrrep1	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode2to4hrrep1	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode2to4hrrep1	A-AFFY-61	P-AFFY-6	2 to 4	h	H_encode2to4hrrep1	encode2to4hrrep1.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode6to8hrrep3	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode6to8hrrep3	P-MEXP-23968	genomic DNA	none	E_encode6to8hrrep3	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode6to8hrrep3	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode6to8hrrep3	A-AFFY-61	P-AFFY-6	6 to 8	h	H_encode6to8hrrep3	encode6to8hrrep3.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode8to10hrrep2	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode8to10hrrep2	P-MEXP-23968	genomic DNA	none	E_encode8to10hrrep2	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode8to10hrrep2	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode8to10hrrep2	A-AFFY-61	P-AFFY-6	8 to 10	h	H_encode8to10hrrep2	encode8to10hrrep2.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode8to10hrrep3	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode8to10hrrep3	P-MEXP-23968	genomic DNA	none	E_encode8to10hrrep3	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode8to10hrrep3	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode8to10hrrep3	A-AFFY-61	P-AFFY-6	8 to 10	h	H_encode8to10hrrep3	encode8to10hrrep3.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode2to4hrrep3	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode2to4hrrep3	P-MEXP-23968	genomic DNA	none	E_encode2to4hrrep3	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode2to4hrrep3	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode2to4hrrep3	A-AFFY-61	P-AFFY-6	2 to 4	h	H_encode2to4hrrep3	encode2to4hrrep3.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode0to2hrrep2	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode0to2hrrep2	P-MEXP-23968	genomic DNA	none	E_encode0to2hrrep2	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode0to2hrrep2	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode0to2hrrep2	A-AFFY-61	P-AFFY-6	0 to 2	h	H_encode0to2hrrep2	encode0to2hrrep2.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode8to10hrrep1	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode8to10hrrep1	P-MEXP-23968	genomic DNA	none	E_encode8to10hrrep1	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode8to10hrrep1	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode8to10hrrep1	A-AFFY-61	P-AFFY-6	8 to 10	h	H_encode8to10hrrep1	encode8to10hrrep1.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode0to2hrrep1	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode0to2hrrep1	P-MEXP-23968	genomic DNA	none	E_encode0to2hrrep1	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode0to2hrrep1	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode0to2hrrep1	A-AFFY-61	P-AFFY-6	0 to 2	h	H_encode0to2hrrep1	encode0to2hrrep1.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode2to4hrrep2	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode2to4hrrep2	P-MEXP-23968	genomic DNA	none	E_encode2to4hrrep2	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode2to4hrrep2	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode2to4hrrep2	A-AFFY-61	P-AFFY-6	2 to 4	h	H_encode2to4hrrep2	encode2to4hrrep2.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode0to10hrrep2	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode0to10hrrep2	P-MEXP-23968	genomic DNA	none	E_encode0to10hrrep2	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode0to10hrrep2	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode0to10hrrep2	A-AFFY-61	P-AFFY-6	0 to 10	h	H_encode0to10hrrep2	encode0to10hrrep2.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode4to6hrrep3	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode4to6hrrep3	P-MEXP-23968	genomic DNA	none	E_encode4to6hrrep3	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode4to6hrrep3	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode4to6hrrep3	A-AFFY-61	P-AFFY-6	4 to 6	h	H_encode4to6hrrep3	encode4to6hrrep3.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode0to10hrrep3	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode0to10hrrep3	P-MEXP-23968	genomic DNA	none	E_encode0to10hrrep3	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode0to10hrrep3	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode0to10hrrep3	A-AFFY-61	P-AFFY-6	0 to 10	h	H_encode0to10hrrep3	encode0to10hrrep3.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode4to6hrrep2	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode4to6hrrep2	P-MEXP-23968	genomic DNA	none	E_encode4to6hrrep2	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode4to6hrrep2	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode4to6hrrep2	A-AFFY-61	P-AFFY-6	4 to 6	h	H_encode4to6hrrep2	encode4to6hrrep2.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode6to8hrrep1	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode6to8hrrep1	P-MEXP-23968	genomic DNA	none	E_encode6to8hrrep1	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode6to8hrrep1	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode6to8hrrep1	A-AFFY-61	P-AFFY-6	6 to 8	h	H_encode6to8hrrep1	encode6to8hrrep1.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip
encode0to2hrrep3	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	HeLa	EFO	EFO_0001185	frozen_sample	American Type Culture Collection (ATCC)	P-MEXP-23968grow	encode0to2hrrep3	P-MEXP-23968	genomic DNA	none	E_encode0to2hrrep3	genomic_DNA	P-MEXP-23969	biotin	none	10	L_encode0to2hrrep3	biotin	genomic_DNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450	H_encode0to2hrrep3	A-AFFY-61	P-AFFY-6	0 to 2	h	H_encode0to2hrrep3	encode0to2hrrep3.cel	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-708/E-MEXP-708.raw.1.zip