Source Name Characteristics [BioSourceType] Characteristics [Individual] Characteristics [DevelopmentalStage] Term Source REF Term Accession Number Characteristics [Organism] Term Source REF Term Accession Number Characteristics [DiseaseState] Term Source REF Term Accession Number Characteristics [Sex] Term Source REF Term Accession Number Provider Protocol REF Sample Name Protocol REF Parameter Value [Amplification] Parameter Value [Extracted product] Extract Name Material Type Protocol REF Parameter Value [Amplification] Parameter Value [Label used] Parameter Value [Amount of nucleic acid labeled] Labeled Extract Name Label Material Type Protocol REF Hybridization Name Array Design REF Comment [Array Design URI] Protocol REF Factor Value [disease_state] Term Source REF Term Accession Number Scan Name Array Data File Comment [ArrayExpress FTP file] Protocol REF Derived Array Data Matrix File Comment [Derived ArrayExpress FTP file] Danio rerio frozen_sample WT2 adult EFO EFO_0001272 Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 normal EFO EFO_0000761 male EFO EFO_0001266 Leiden University P-MEXP-10213 RNA polymerases total RNA Leiden HS03 total_RNA P-MEXP-10215 none biotin 10 HS03 biotin synthetic_RNA Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450 HS03 A-AFFY-38 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-38 P-AFFY-6 normal EFO EFO_0000761 DBA:MEXP:1647:12993 E-MEXP-405-raw-data-535487651.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-405/E-MEXP-405.raw.1.zip Affymetrix:Protocol:ExpressionStat E-MEXP-405-processed-data-1343467510.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-405/E-MEXP-405.processed.1.zip Danio rerio__S:BioSource:MEXP:180752 frozen_sample M2 adult EFO EFO_0001272 Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 fish tuberculosis male EFO EFO_0001266 Leiden University P-MEXP-10213t Leiden_HS04 P-MEXP-10213 RNA polymerases total RNA Leiden HS04 total_RNA P-MEXP-10215 none biotin 10 HS04 biotin synthetic_RNA Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450 HS04 A-AFFY-38 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-38 P-AFFY-6 Mycobacterium marinum DBA:MEXP:1647:12994 E-MEXP-405-raw-data-535487734.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-405/E-MEXP-405.raw.1.zip Affymetrix:Protocol:ExpressionStat E-MEXP-405-processed-data-1343467510.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-405/E-MEXP-405.processed.1.zip Danio rerio__S:BioSource:MEXP:180750 frozen_sample M adult EFO EFO_0001272 Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 fish tuberculosis male EFO EFO_0001266 Leiden University P-MEXP-10213t Leiden_HS02 P-MEXP-10213 RNA polymerases total RNA Leiden HS02 total_RNA P-MEXP-10215 none biotin 10 HS02 biotin synthetic_RNA Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450 HS02 A-AFFY-38 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-38 P-AFFY-6 Mycobacterium marinum DBA:MEXP:1647:12992 E-MEXP-405-raw-data-535487565.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-405/E-MEXP-405.raw.1.zip Affymetrix:Protocol:ExpressionStat E-MEXP-405-processed-data-1343466456.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-405/E-MEXP-405.processed.1.zip Danio rerio__S:BioSource:MEXP:180749 frozen_sample WT1 adult EFO EFO_0001272 Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 normal EFO EFO_0000761 male EFO EFO_0001266 Leiden University P-MEXP-10213 RNA polymerases total RNA Leiden HS01 total_RNA P-MEXP-10215 none biotin 10 HS01 biotin synthetic_RNA Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450 HS01 A-AFFY-38 http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-38 P-AFFY-6 normal EFO EFO_0000761 DBA:MEXP:1647:12991 E-MEXP-405-raw-data-535487458.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-405/E-MEXP-405.raw.1.zip Affymetrix:Protocol:ExpressionStat E-MEXP-405-processed-data-1343466456.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-405/E-MEXP-405.processed.1.zip