Source Name	Material Type	Characteristics[organism]	Provider	Characteristics[disease]	Protocol REF	Protocol REF	Protocol REF	Protocol REF	Extract Name	Material Type	Protocol REF	Labeled Extract Name	Label	Protocol REF	Assay Name	Technology Type	Array Design REF	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	Factor Value[disease]
MOCK REP 1	whole organism	Lycopersicon esculentum	Dr. Punya Nachappa	mock-inoculated	P-MTAB-32510	P-MTAB-32509	P-MTAB-32508	P-MTAB-32506	E_MOCK REP I	total RNA	P-MTAB-32507	L_MOCK REP 1	biotin	P-MTAB-32505	H_MOCK REP I	array assay	A-AFFY-87	P-AFFY-6	ArrayExpress	B1-T1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	ArrayExpress	B1-T1.CHP	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.processed.1.zip	mock-inoculated
MOCK REP II	whole organism	Lycopersicon esculentum	Dr. Punya Nachappa	mock-inoculated	P-MTAB-32510	P-MTAB-32509	P-MTAB-32508	P-MTAB-32506	E_MOCK REP II	total RNA	P-MTAB-32507	L_MOCK REP II	biotin	P-MTAB-32505	H_MOCK REP II	array assay	A-AFFY-87	P-AFFY-6	ArrayExpress	M7.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	ArrayExpress	M7.CHP	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.processed.1.zip	mock-inoculated
MOCK REP III	whole organism	Lycopersicon esculentum	Dr. Punya Nachappa	mock-inoculated	P-MTAB-32510	P-MTAB-32509	P-MTAB-32508	P-MTAB-32506	E_MOCK REP III	total RNA	P-MTAB-32507	L_MOCK REP III	biotin	P-MTAB-32505	H_MOCK REP III	array assay	A-AFFY-87	P-AFFY-6	ArrayExpress	M7_3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	ArrayExpress	M7_3.CHP	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.processed.1.zip	mock-inoculated
TSM REP I	whole organism	Lycopersicon esculentum	Dr. Punya Nachappa	spider mite infestation	P-MTAB-32510	P-MTAB-32509	P-MTAB-32508	P-MTAB-32506	E_TSM REP I	total RNA	P-MTAB-32507	L_TSM REP I	biotin	P-MTAB-32505	H_TSM REP I	array assay	A-AFFY-87	P-AFFY-6	ArrayExpress	B1-T5.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	ArrayExpress	B1-T5.CHP	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.processed.1.zip	spider mite infestation
TSM REP II	whole organism	Lycopersicon esculentum	Dr. Punya Nachappa	spider mite infestation	P-MTAB-32510	P-MTAB-32509	P-MTAB-32508	P-MTAB-32506	E_TSM REP II	total RNA	P-MTAB-32507	L_TSM REP II	biotin	P-MTAB-32505	H_TSM REP II	array assay	A-AFFY-87	P-AFFY-6	ArrayExpress	TSM.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	ArrayExpress	TSM.CHP	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.processed.1.zip	spider mite infestation
TSM REP III	whole organism	Lycopersicon esculentum	Dr. Punya Nachappa	spider mite infestation	P-MTAB-32510	P-MTAB-32509	P-MTAB-32508	P-MTAB-32506	E_TSM REP III	total RNA	P-MTAB-32507	L_TSM REP III	biotin	P-MTAB-32505	H_TSM REP III	array assay	A-AFFY-87	P-AFFY-6	ArrayExpress	TSM_3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	ArrayExpress	TSM_3.CHP	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.processed.1.zip	spider mite infestation
TSWV AND TSM REP I	whole organism	Lycopersicon esculentum	Dr. Punya Nachappa	virus-infected + spider mite infestation	P-MTAB-32510	P-MTAB-32509	P-MTAB-32508	P-MTAB-32506	E_TSWV AND TSM REP I	total RNA	P-MTAB-32507	L_TSWV AND TSM REP I	biotin	P-MTAB-32505	H_TSWV AND TSM REP I	array assay	A-AFFY-87	P-AFFY-6	ArrayExpress	B1-T6.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	ArrayExpress	B1-T6.CHP	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.processed.1.zip	virus-infected + spider mite infestation
TSWV AND TSM REP II	whole organism	Lycopersicon esculentum	Dr. Punya Nachappa	virus-infected + spider mite infestation	P-MTAB-32510	P-MTAB-32509	P-MTAB-32508	P-MTAB-32506	E_TSWV AND TSM REP II	total RNA	P-MTAB-32507	L_TSWV AND TSM REP II	biotin	P-MTAB-32505	H_TSWV AND TSM REP II	array assay	A-AFFY-87	P-AFFY-6	ArrayExpress	TSWV_TSM.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	ArrayExpress	TSWV_TSM.CHP	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.processed.1.zip	virus-infected + spider mite infestation
TSWV AND TSM REP III	whole organism	Lycopersicon esculentum	Dr. Punya Nachappa	virus-infected + spider mite infestation	P-MTAB-32510	P-MTAB-32509	P-MTAB-32508	P-MTAB-32506	E_TSWV AND TSM REP III	total RNA	P-MTAB-32507	L_TSWV AND TSM REP III	biotin	P-MTAB-32505	H_TSWV AND TSM REP III	array assay	A-AFFY-87	P-AFFY-6	ArrayExpress	TSWV_TSM_3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	ArrayExpress	TSWV_TSM_3.CHP	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.processed.1.zip	virus-infected + spider mite infestation
TSWV REP I	whole organism	Lycopersicon esculentum	Dr. Punya Nachappa	virus-infected	P-MTAB-32510	P-MTAB-32509	P-MTAB-32508	P-MTAB-32506	E_TSWV REP I	total RNA	P-MTAB-32507	L_TSWV REP I	biotin	P-MTAB-32505	H_TSWV REP I	array assay	A-AFFY-87	P-AFFY-6	ArrayExpress	B1-T2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	ArrayExpress	B1-T2.CHP	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.processed.1.zip	virus-infected
TSWV REP II	whole organism	Lycopersicon esculentum	Dr. Punya Nachappa	virus-infected	P-MTAB-32510	P-MTAB-32509	P-MTAB-32508	P-MTAB-32506	E_TSWV REP II	total RNA	P-MTAB-32507	L_TSWV REP II	biotin	P-MTAB-32505	H_TSWV REP II	array assay	A-AFFY-87	P-AFFY-6	ArrayExpress	TSWV7.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	ArrayExpress	TSWV7.CHP	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.processed.1.zip	virus-infected
TSWV REP III	whole organism	Lycopersicon esculentum	Dr. Punya Nachappa	virus-infected	P-MTAB-32510	P-MTAB-32509	P-MTAB-32508	P-MTAB-32506	E_TSWV REP III	total RNA	P-MTAB-32507	L_TSWV REP III	biotin	P-MTAB-32505	H_TSWV REP III	array assay	A-AFFY-87	P-AFFY-6	ArrayExpress	TSWV_3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.raw.1.zip	Affymetrix:Protocol:MAS4:ExpressionCall	ArrayExpress	TSWV_3.CHP	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-3888/E-MEXP-3888.processed.1.zip	virus-infected