Source Name	Characteristics [Organism]	Characteristics [Genotype]	Protocol REF	Extract Name	Material Type	Protocol REF	Labeled Extract Name	Label	Material Type	Protocol REF	Hybridization Name	Array Design REF	Comment [Array Design URI]	Protocol REF	Factor Value [GENOTYPE]	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Derived Array Data File	Comment [Derived ArrayExpress FTP file]
KO2	Mus musculus	Lsh KO	P-MTAB-5492	27017802	total_RNA	P-NGEN-5	27017802	Cy3	unknown	P-NGEN-9	27017802	A-MEXP-1707	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-1707	P-NGEN-13	Lsh KO	27017802_532_pair.txt	27017802_532_pair.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-2385/E-MEXP-2385.raw.1.zip	P-MTAB-5490	    	  
KO2	Mus musculus	Lsh KO	P-MTAB-5492	27017702	total_RNA	P-NGEN-5	27017702	Cy3	unknown	P-NGEN-9	27017702	A-MEXP-1707	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-1707	P-NGEN-13	Lsh KO	27017702_532_pair.txt	27017702_532_pair.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-2385/E-MEXP-2385.raw.1.zip	P-MTAB-5490	    	  
KO2	Mus musculus	Lsh KO	P-MTAB-5492	27017602	total_RNA	P-NGEN-5	27017602	Cy3	unknown	P-NGEN-9	27017602	A-MEXP-1707	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-1707	P-NGEN-13	Lsh KO	27017602_532_pair.txt	27017602_532_pair.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-2385/E-MEXP-2385.raw.1.zip	P-MTAB-5490	    	  
WT	Mus musculus	wild_type	P-MTAB-5492	26857402	total_RNA	P-NGEN-5	26857402	Cy3	unknown	P-NGEN-9	26857402	A-MEXP-1707	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-1707	P-NGEN-13	wild_type	26857402_532_pair.txt	26857402_532_pair.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-2385/E-MEXP-2385.raw.1.zip	P-MTAB-5490	    	  
WT	Mus musculus	wild_type	P-MTAB-5492	27017502	total_RNA	P-NGEN-5	27017502	Cy3	unknown	P-NGEN-9	27017502	A-MEXP-1707	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-1707	P-NGEN-13	wild_type	27017502_532_pair.txt	27017502_532_pair.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-2385/E-MEXP-2385.raw.1.zip	P-MTAB-5490	    	  
WT	Mus musculus	wild_type	P-MTAB-5492	26857202	total_RNA	P-NGEN-5	26857202	Cy3	unknown	P-NGEN-9	26857202	A-MEXP-1707	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-1707	P-NGEN-13	wild_type	26857202_532_pair.txt	26857202_532_pair.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-2385/E-MEXP-2385.raw.1.zip	P-MTAB-5490	    	  
KO1	Mus musculus	Lsh KO	P-MTAB-5492	26857302	total_RNA	P-NGEN-5	26857302	Cy3	unknown	P-NGEN-9	26857302	A-MEXP-1707	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-1707	P-NGEN-13	Lsh KO	26857302_532_pair.txt	26857302_532_pair.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-2385/E-MEXP-2385.raw.1.zip	P-MTAB-5491	26857302_532_norm_RMA_pair.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-2385/E-MEXP-2385.processed.1.zip
KO1	Mus musculus	Lsh KO	P-MTAB-5492	26857302	total_RNA	P-NGEN-5	26857302	Cy3	unknown	P-NGEN-9	26857302	A-MEXP-1707	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-1707	P-NGEN-13	Lsh KO	26857302_532_pair.txt	26857302_532_pair.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-2385/E-MEXP-2385.raw.1.zip	P-MTAB-5491	Mouse_Lsh_KO_vs_WT_expression_data_-070409-_low_intensity_filtered_-_plus_abs_expr_-_submitted_miamexpress.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-2385/E-MEXP-2385.processed.1.zip
KO1	Mus musculus	Lsh KO	P-MTAB-5492	26857502	total_RNA	P-NGEN-5	26857502	Cy3	unknown	P-NGEN-9	26857502	A-MEXP-1707	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-1707	P-NGEN-13	Lsh KO	26857502_532_pair.txt	26857502_532_pair.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-2385/E-MEXP-2385.raw.1.zip	P-MTAB-5490	26857502_532_norm_RMA_pair.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-2385/E-MEXP-2385.processed.1.zip