Source Name	Characteristics [Ecotype]	Characteristics [DevelopmentalStage]	Characteristics [Genotype]	Characteristics [BioSourceType]	Characteristics [Organism]	Term Source REF	Term Accession Number	Protocol REF	Protocol REF	Sample Name	Protocol REF	Parameter Value [Amplification]	Parameter Value [Extracted product]	Extract Name	Material Type	Protocol REF	Parameter Value [Amplification]	Parameter Value [Label used]	Parameter Value [Amount of nucleic acid labeled]	Labeled Extract Name	Label	Material Type	Protocol REF	Parameter Value [time]	Unit [TimeUnit]	Parameter Value [temperature]	Unit [TemperatureUnit]	Parameter Value [Volume]	Unit [VolumeUnit]	Parameter Value [Quantity of label target used]	Unit [MassUnit]	Parameter Value [Chamber type]	Hybridization Name	Array Design REF	Comment [Array Design URI]	Factor Value [Irradiation]	Unit [QuantityUnit]	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Derived Array Data Matrix File	Comment [Derived ArrayExpress FTP file]
Arabidopsis thaliana	Columbia-0	0.7-1 Boyes key	wild_type	frozen_sample	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	P-MEXP-6419	P-MEXP-6420	SNIrSADE2	P-MEXP-5683	RNA polymerases	total RNA	SNIrSADE2	total_RNA	P-MEXP-5690	none	Cy5	5	SNIrSADE2_5	Cy5	total_RNA	P-MEXP-5691	16	h	42	degree_C	80	nL	1	ug	Corning Microarray Technology- CMT-Hyb chamber	HYBRID7248SUB1048	A-MEXP-118	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-118	100;0	Gray	DBA:MEXP:1048:GEM	E-MEXP-220-raw-data-374731212.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.raw.1.zip	P-MEXP-6421	E-MEXP-220-processed-data-1342184910.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.processed.1.zip
Arabidopsis thaliana__S:BioSource:MEXP:173520	Columbia-0	0.7-1 Boyes key	wild_type	frozen_sample	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	P-MEXP-6419	P-MEXP-6420	SIrSADE2	P-MEXP-5683	RNA polymerases	total RNA	SIrSADE2	total_RNA	P-MEXP-5689	none	Cy3	5	SIrSADE2_3	Cy3	total_RNA	P-MEXP-5691	16	h	42	degree_C	80	nL	1	ug	Corning Microarray Technology- CMT-Hyb chamber	HYBRID7248SUB1048	A-MEXP-118	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-118	100;0	Gray	DBA:MEXP:1048:GEM	E-MEXP-220-raw-data-374731212.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.raw.1.zip	P-MEXP-6421	E-MEXP-220-processed-data-1342184910.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.processed.1.zip
Arabidopsis thaliana__S:BioSource:MEXP:173516	Columbia-0	0.7-1 Boyes key	wild_type	frozen_sample	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	P-MEXP-6419	P-MEXP-6420	SNIrSADE1	P-MEXP-5683	RNA polymerases	total RNA	SNIrSADE1	total_RNA	P-MEXP-5690	none	Cy5	5	SNIrSADE1_5	Cy5	total_RNA	P-MEXP-5691	16	h	42	degree_C	80	nL	1	ug	Corning Microarray Technology- CMT-Hyb chamber	HYBRID7247SUB1048	A-MEXP-118	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-118	100;0	Gray	DBA:MEXP:1048:GEM	E-MEXP-220-raw-data-374731167.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.raw.1.zip	P-MEXP-6421	E-MEXP-220-processed-data-1342184910.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.processed.1.zip
Arabidopsis thaliana__S:BioSource:MEXP:173519	Columbia-0	0.7-1 Boyes key	wild_type	frozen_sample	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	P-MEXP-6419	P-MEXP-6420	SIrSADE1	P-MEXP-5683	RNA polymerases	total RNA	SIrSADE1	total_RNA	P-MEXP-5689	none	Cy3	5	SIrSADE1_3	Cy3	total_RNA	P-MEXP-5691	16	h	42	degree_C	80	nL	1	ug	Corning Microarray Technology- CMT-Hyb chamber	HYBRID7247SUB1048	A-MEXP-118	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-118	100;0	Gray	DBA:MEXP:1048:GEM	E-MEXP-220-raw-data-374731167.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.raw.1.zip	P-MEXP-6421	E-MEXP-220-processed-data-1342184910.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.processed.1.zip
Arabidopsis thaliana__S:BioSource:MEXP:173521	Columbia-0	0.7-1 Boyes key	wild_type	frozen_sample	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	P-MEXP-6419	P-MEXP-6420	SIrSADE3	P-MEXP-5683	RNA polymerases	total RNA	SIrSADE3	total_RNA	P-MEXP-5689	none	Cy3	5	SIrSADE3_3	Cy3	total_RNA	P-MEXP-5691	16	h	42	degree_C	80	nL	1	ug	Corning Microarray Technology- CMT-Hyb chamber	HYBRID7250SUB1048	A-MEXP-118	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-118	100;0	Gray	DBA:MEXP:1048:GEM	E-MEXP-220-raw-data-374731310.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.raw.1.zip	P-MEXP-6421	E-MEXP-220-processed-data-1342184910.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.processed.1.zip
Arabidopsis thaliana__S:BioSource:MEXP:173518	Columbia-0	0.7-1 Boyes key	wild_type	frozen_sample	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	P-MEXP-6419	P-MEXP-6420	SNIrSADE3	P-MEXP-5683	RNA polymerases	total RNA	SNIrSADE3	total_RNA	P-MEXP-5690	none	Cy5	5	SNIrSADE3_5	Cy5	total_RNA	P-MEXP-5691	16	h	42	degree_C	80	nL	1	ug	Corning Microarray Technology- CMT-Hyb chamber	HYBRID7250SUB1048	A-MEXP-118	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-118	100;0	Gray	DBA:MEXP:1048:GEM	E-MEXP-220-raw-data-374731310.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.raw.1.zip	P-MEXP-6421	E-MEXP-220-processed-data-1342184910.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.processed.1.zip
Arabidopsis thaliana__S:BioSource:MEXP:173520	Columbia-0	0.7-1 Boyes key	wild_type	frozen_sample	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	P-MEXP-6419	P-MEXP-6420	SIrSADE2	P-MEXP-5683	RNA polymerases	total RNA	SIrSADE2	total_RNA	P-MEXP-5690	none	Cy5	5	SIrSADE2_5	Cy5	total_RNA	P-MEXP-5691	16	h	42	degree_C	80	nL	1	ug	Corning Microarray Technology- CMT-Hyb chamber	HYBRID7249SUB1048	A-MEXP-118	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-118	100;0	Gray	DBA:MEXP:1048:GEM	E-MEXP-220-raw-data-374731266.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.raw.1.zip	P-MEXP-6421	E-MEXP-220-processed-data-1342184910.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.processed.1.zip
Arabidopsis thaliana	Columbia-0	0.7-1 Boyes key	wild_type	frozen_sample	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	P-MEXP-6419	P-MEXP-6420	SNIrSADE2	P-MEXP-5683	RNA polymerases	total RNA	SNIrSADE2	total_RNA	P-MEXP-5689	none	Cy3	5	SNIrSADE2_3	Cy3	total_RNA	P-MEXP-5691	16	h	42	degree_C	80	nL	1	ug	Corning Microarray Technology- CMT-Hyb chamber	HYBRID7249SUB1048	A-MEXP-118	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-118	100;0	Gray	DBA:MEXP:1048:GEM	E-MEXP-220-raw-data-374731266.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.raw.1.zip	P-MEXP-6421	E-MEXP-220-processed-data-1342184910.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.processed.1.zip
Arabidopsis thaliana__S:BioSource:MEXP:173519	Columbia-0	0.7-1 Boyes key	wild_type	frozen_sample	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	P-MEXP-6419	P-MEXP-6420	SIrSADE1	P-MEXP-5683	RNA polymerases	total RNA	SIrSADE1	total_RNA	P-MEXP-5690	none	Cy5	5	SIrSADE1_5	Cy5	total_RNA	P-MEXP-5691	16	h	42	degree_C	80	nL	1	ug	Corning Microarray Technology- CMT-Hyb chamber	HYBRID7246SUB1048	A-MEXP-118	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-118	100;0	Gray	DBA:MEXP:1048:GEM	E-MEXP-220-raw-data-374731102.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.raw.1.zip	P-MEXP-6421	E-MEXP-220-processed-data-1342184910.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.processed.1.zip
Arabidopsis thaliana__S:BioSource:MEXP:173516	Columbia-0	0.7-1 Boyes key	wild_type	frozen_sample	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	P-MEXP-6419	P-MEXP-6420	SNIrSADE1	P-MEXP-5683	RNA polymerases	total RNA	SNIrSADE1	total_RNA	P-MEXP-5689	none	Cy3	5	SNIrSADE1_3	Cy3	total_RNA	P-MEXP-5691	16	h	42	degree_C	80	nL	1	ug	Corning Microarray Technology- CMT-Hyb chamber	HYBRID7246SUB1048	A-MEXP-118	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-118	100;0	Gray	DBA:MEXP:1048:GEM	E-MEXP-220-raw-data-374731102.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.raw.1.zip	P-MEXP-6421	E-MEXP-220-processed-data-1342184910.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.processed.1.zip
Arabidopsis thaliana__S:BioSource:MEXP:173518	Columbia-0	0.7-1 Boyes key	wild_type	frozen_sample	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	P-MEXP-6419	P-MEXP-6420	SNIrSADE3	P-MEXP-5683	RNA polymerases	total RNA	SNIrSADE3	total_RNA	P-MEXP-5689	none	Cy3	5	SNIrSADE3_3	Cy3	total_RNA	P-MEXP-5691	16	h	42	degree_C	80	nL	1	ug	Corning Microarray Technology- CMT-Hyb chamber	HYBRID7251SUB1048	A-MEXP-118	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-118	100;0	Gray	DBA:MEXP:1048:GEM	E-MEXP-220-raw-data-374731353.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.raw.1.zip	P-MEXP-6421	E-MEXP-220-processed-data-1342184910.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.processed.1.zip
Arabidopsis thaliana__S:BioSource:MEXP:173521	Columbia-0	0.7-1 Boyes key	wild_type	frozen_sample	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	P-MEXP-6419	P-MEXP-6420	SIrSADE3	P-MEXP-5683	RNA polymerases	total RNA	SIrSADE3	total_RNA	P-MEXP-5690	none	Cy5	5	SIrSADE3_5	Cy5	total_RNA	P-MEXP-5691	16	h	42	degree_C	80	nL	1	ug	Corning Microarray Technology- CMT-Hyb chamber	HYBRID7251SUB1048	A-MEXP-118	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-MEXP-118	100;0	Gray	DBA:MEXP:1048:GEM	E-MEXP-220-raw-data-374731353.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.raw.1.zip	P-MEXP-6421	E-MEXP-220-processed-data-1342184910.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MEXP/E-MEXP-220/E-MEXP-220.processed.1.zip