Source Name	Material Type	Characteristics[Organism]	Characteristics[BioSourceType]	Characteristics[DevelopmentalStage]	Characteristics[Sex]	Characteristics[Phenotype]	Characteristics[GeneticModification]	Characteristics[CellLine]	Characteristics[CellType]	Protocol REF	Protocol REF	Extract Name	Material Type	Protocol REF	Term Source REF	LabeledExtract Name	Label	Protocol REF	Term Source REF	Hybridization Name	Array Design REF	Protocol REF	Term Source REF	Array Data File	Protocol REF	Derived Array Data Matrix File	Factor Value[DEVELOPMENTAL_STAGE]	Factor Value[TIME]	Unit[TimeUnit]	Factor Value[PHENOTYPE]
Day 4 Gsc positive Ecad pos Annexin-	cell	Mus musculus	fresh_sample	differentiated	male	E-cadherin positive	gene_knock_in	Gsc-GFP-EB5	embryonic stem cells	P-MTAB-825	Trizol	Day 4 Gsc positive Ecad pos Annexin-	total_RNA	P-AFFY-2	ArrayExpress	Day 4 Gsc positive Ecad pos Annexin-	biotin	Affymetrix:Protocol:Hybridization-Unknown	ArrayExpress	4_Gscpos_ECadherinpos_Annexin-_PI-_day4_SFO3_activin_A	A-AFFY-6	P-AFFY-6	ArrayExpress	4_Gscpos_ECadherinpos_Annexin-_PI-_day4_SFO3_activin_A.CEL	P-MTAB-824	Mas5_levels_A.txt.magetab	differentiated	4	day	E-cadherin positive
Day 5 Gsc positive  Ecad neg	cell	Mus musculus	fresh_sample	differentiated	male	E-cadherin negative	gene_knock_in	Gsc-GFP-EB5	embryonic stem cells	P-MTAB-822	Trizol	Day 5 Gsc positive  Ecad neg	total_RNA	P-AFFY-2	ArrayExpress	Day 5 Gsc positive  Ecad neg	biotin	Affymetrix:Protocol:Hybridization-Unknown	ArrayExpress	G3-2_Activin_ns_d5_ecad-_gscpos_A	A-AFFY-6	P-AFFY-6	ArrayExpress	G3-2_Activin_ns_d5_ecad-_gscpos_A.CEL	P-MTAB-824	Mas5_levels_A.txt.magetab	differentiated	5	day	E-cadherin negative
Day 5 Gsc positive  Ecad pos	cell	Mus musculus	fresh_sample	differentiated	male	E-cadherin positive	gene_knock_in	Gsc-GFP-EB5	embryonic stem cells	P-MTAB-822	Trizol	Day 5 Gsc positive  Ecad pos	total_RNA	P-AFFY-2	ArrayExpress	Day 5 Gsc positive  Ecad pos	biotin	Affymetrix:Protocol:Hybridization-Unknown	ArrayExpress	G3-2_Activin_ns_d5_ecadpos_gscpos_A	A-AFFY-6	P-AFFY-6	ArrayExpress	G3-2_Activin_ns_d5_ecadpos_gscpos_A.CEL	P-MTAB-824	Mas5_levels_A.txt.magetab	differentiated	5	day	E-cadherin positive
EB5 ES cells	cell	Mus musculus	fresh_sample	undifferentiated	male	  	gene_knock_in	EB5	embryonic stem cells	P-MTAB-823	Trizol	EB5 ES cells	total_RNA	P-AFFY-2	ArrayExpress	EB5 ES cells	biotin	Affymetrix:Protocol:Hybridization-Unknown	ArrayExpress	ES_EB5_undif_LIF_A	A-AFFY-6	P-AFFY-6	ArrayExpress	ES_EB5_undif_LIF_A.CEL	P-MTAB-824	Mas5_levels_A.txt.magetab	undifferentiated	0	day	    
Day 4 Gsc positive Ecad pos Annexin-	cell	Mus musculus	fresh_sample	differentiated	male	E-cadherin positive	gene_knock_in	Gsc-GFP-EB5	embryonic stem cells	P-MTAB-825	Trizol	Day 4 Gsc positive Ecad pos Annexin-	total_RNA	P-AFFY-2	ArrayExpress	Day 4 Gsc positive Ecad pos Annexin-	biotin	Affymetrix:Protocol:Hybridization-Unknown	ArrayExpress	4_Gscpos_ECadherinpos_Annexin-_PI-_day4_SFO3_activin_B	A-AFFY-7	P-AFFY-6	ArrayExpress	4_Gscpos_ECadherinpos_Annexin-_PI-_day4_SFO3_activin_B.CEL	P-MTAB-824	Mas5_levels_B.txt.magetab	differentiated	4	day	E-cadherin positive
Day 5 Gsc positive  Ecad neg	cell	Mus musculus	fresh_sample	differentiated	male	E-cadherin negative	gene_knock_in	Gsc-GFP-EB5	embryonic stem cells	P-MTAB-822	Trizol	Day 5 Gsc positive  Ecad neg	total_RNA	P-AFFY-2	ArrayExpress	Day 5 Gsc positive  Ecad neg	biotin	Affymetrix:Protocol:Hybridization-Unknown	ArrayExpress	G3-2_Activin_ns_d5_ecad-_gscpos_B	A-AFFY-7	P-AFFY-6	ArrayExpress	G3-2_Activin_ns_d5_ecad-_gscpos_B.CEL	P-MTAB-824	Mas5_levels_B.txt.magetab	differentiated	5	day	E-cadherin negative
Day 5 Gsc positive  Ecad pos	cell	Mus musculus	fresh_sample	differentiated	male	E-cadherin positive	gene_knock_in	Gsc-GFP-EB5	embryonic stem cells	P-MTAB-822	Trizol	Day 5 Gsc positive  Ecad pos	total_RNA	P-AFFY-2	ArrayExpress	Day 5 Gsc positive  Ecad pos	biotin	Affymetrix:Protocol:Hybridization-Unknown	ArrayExpress	G3-2_Activin_ns_d5_ecadpos_gscpos_B	A-AFFY-7	P-AFFY-6	ArrayExpress	G3-2_Activin_ns_d5_ecadpos_gscpos_B.CEL	P-MTAB-824	Mas5_levels_B.txt.magetab	differentiated	5	day	E-cadherin positive
EB5 ES cells	cell	Mus musculus	fresh_sample	undifferentiated	male	  	gene_knock_in	EB5	embryonic stem cells	P-MTAB-823	Trizol	EB5 ES cells	total_RNA	P-AFFY-2	ArrayExpress	EB5 ES cells	biotin	Affymetrix:Protocol:Hybridization-Unknown	ArrayExpress	ES_EB5_undif_LIF_B	A-AFFY-7	P-AFFY-6	ArrayExpress	ES_EB5_undif_LIF_B.CEL	P-MTAB-824	Mas5_levels_B.txt.magetab	undifferentiated	0	day	    
Day 4 Gsc positive Ecad pos Annexin-	cell	Mus musculus	fresh_sample	differentiated	male	E-cadherin positive	gene_knock_in	Gsc-GFP-EB5	embryonic stem cells	P-MTAB-825	Trizol	Day 4 Gsc positive Ecad pos Annexin-	total_RNA	P-AFFY-2	ArrayExpress	Day 4 Gsc positive Ecad pos Annexin-	biotin	Affymetrix:Protocol:Hybridization-Unknown	ArrayExpress	4_Gscpos_ECadherinpos_Annexin-_PI-_day4_SFO3_activin_C	A-AFFY-8	P-AFFY-6	ArrayExpress	4_Gscpos_ECadherinpos_Annexin-_PI-_day4_SFO3_activin_C.CEL	P-MTAB-824	Mas5_levels_C.txt.magetab	differentiated	4	day	E-cadherin positive
Day 5 Gsc positive  Ecad neg	cell	Mus musculus	fresh_sample	differentiated	male	E-cadherin negative	gene_knock_in	Gsc-GFP-EB5	embryonic stem cells	P-MTAB-822	Trizol	Day 5 Gsc positive  Ecad neg	total_RNA	P-AFFY-2	ArrayExpress	Day 5 Gsc positive  Ecad neg	biotin	Affymetrix:Protocol:Hybridization-Unknown	ArrayExpress	G3-2_Activin_ns_d5_ecad-_gscpos_C	A-AFFY-8	P-AFFY-6	ArrayExpress	G3-2_Activin_ns_d5_ecad-_gscpos_C.CEL	P-MTAB-824	Mas5_levels_C.txt.magetab	differentiated	5	day	E-cadherin negative
Day 5 Gsc positive  Ecad pos	cell	Mus musculus	fresh_sample	differentiated	male	E-cadherin positive	gene_knock_in	Gsc-GFP-EB5	embryonic stem cells	P-MTAB-822	Trizol	Day 5 Gsc positive  Ecad pos	total_RNA	P-AFFY-2	ArrayExpress	Day 5 Gsc positive  Ecad pos	biotin	Affymetrix:Protocol:Hybridization-Unknown	ArrayExpress	G3-2_Activin_ns_d5_ecadpos_gscpos_C	A-AFFY-8	P-AFFY-6	ArrayExpress	G3-2_Activin_ns_d5_ecadpos_gscpos_C.CEL	P-MTAB-824	Mas5_levels_C.txt.magetab	differentiated	5	day	E-cadherin positive
EB5 ES cells	cell	Mus musculus	fresh_sample	undifferentiated	male	  	gene_knock_in	EB5	embryonic stem cells	P-MTAB-823	Trizol	EB5 ES cells	total_RNA	P-AFFY-2	ArrayExpress	EB5 ES cells	biotin	Affymetrix:Protocol:Hybridization-Unknown	ArrayExpress	ES_EB5_undif_LIF_C	A-AFFY-8	P-AFFY-6	ArrayExpress	ES_EB5_undif_LIF_C.CEL	P-MTAB-824	Mas5_levels_C.txt.magetab	undifferentiated	0	day