Investigation Title	Transcription profiling of intestine from wild type and Mdm2 knock-out mice					
Comment[Submitted Name]	Analysis of gene expression in mice lacking Mdm2 in the intestine					
Experimental Design	in_vivo_design	disease_state_design	co-expression_design	transcription profiling by array		
Experimental Design Term Source REF		mo	mo	EFO		
Comment[AEExperimentType]	transcription profiling by array					
Comment[AEExperimentDisplayName]	Transcription profiling by array of Mdm2 knock out mice					
Comment[ArrayExpressReleaseDate]	2008-03-23					
Comment[AEMIAMESCORE]	5					
Comment[ArrayExpressAccession]	E-MEXP-1431					
Comment[MAGETAB TimeStamp_Version]	2010-08-09 21:56:52 Last Changed Rev: 13058					
Experimental Factor Name	genotype					
Experimental Factor Type	genotype					
Experimental Factor Term Source REF						
Person Last Name	Valentin-Vega					
Person First Name	Yasmine					
Person Mid Initials	A					
Person Email	Yasmine.Valentin@uth.tmc.edu					
Person Phone	713-834-6387					
Person Fax	713-834-6380					
Person Address	1515 Holcombe Blvd. Unit 1010					
Person Affiliation	Cancer Genetics					
Person Roles	submitter					
Person Roles Term Source REF	The MGED Ontology					
Quality Control Type	biological_replicate					
Quality Control Term Source REF	The MGED Ontology					
Replicate Type						
Replicate Term Source REF						
Normalization Type						
Normalization Term Source REF						
Date of Experiment						
Public Release Date	2008-03-23					
PubMed ID	18636077					
Publication DOI	10.1038/cdd.2008.109					
Publication Author List	Valentin-Vega YA, Okano H, Lozano G.					
Publication Title	The intestinal epithelium compensates for p53-mediated cell death and guarantees organismal survival					
Publication Status	published					
Publication Status Term Source REF	EFO					
Experiment Description	Analyzed gene expression in 3-day old mice lacking Mdm2 in the intestine 					
Protocol Name	P-MEXP-127601	P-AFFY-2	Affymetrix:Protocol:Hybridization-EukGE-WS2v5	P-AFFY-6	Affymetrix:Protocol:ExpressionStat	Affymetrix:Protocol:MAS4:ExpressionCall
Protocol Type	nucleic_acid_extraction	labeling	hybridization	feature_extraction	bioassay_data_transformation	bioassay_data_transformation
Protocol Description	Total RNA was isolated from whole small intestines of 3-day old mice using the RNAeasy kit (Qiagen). 	Title: Affymetrix in vitro transcription. Description: 	Title: Affymetrix EukGE-WS2v5 Hybridization. Description: 	Title: Affymetrix CEL analysis. Description: 	Title: Affymetrix CHP Analysis (ExpressionStat). Description: 	Title: Affymetrix CHP Analysis (ExpressionCall). Description: 
Protocol Parameters	Amplification;Extracted product;					
Protocol Hardware						
Protocol Software			MicroArraySuite 5.0	MicroArraySuite 5.0	MicroArraySuite 5.0	MicroArraySuite 4.0
Protocol Contact						
Protocol Term Source REF					The MGED Ontology	mo
SDRF File	E-MEXP-1431.sdrf.txt					
Term Source Name	NCI_thesaurus	nci_thesaurus	ArrayExpress	The MGED Ontology	mo	EFO
Term Source File	ncithesaurus.obo.alt	http://nciterms.nci.nih.gov/NCIBrowser/Dictionary.do	http://www.ebi.ac.uk/arrayexpress	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://www.ebi.ac.uk/efo/
Term Source Version