Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [Sex] Characteristics [age] Characteristics [biosample encode accession] Characteristics [description] Characteristics [dev stage] Characteristics [health state] Characteristics [lab] Characteristics [link] Characteristics [link] Characteristics [link] Characteristics [organism] Term Source REF Term Accession Number Characteristics [organism part] Term Source REF Term Accession Number Characteristics [sample type] Protocol REF Term Source REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Comment [ENA_EXPERIMENT] Comment [Platform_title] Technology Type Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [biosample encode accession] FactorValue [description] FactorValue [link] GSM2191073 1 For full experimental details, see the ENCODE Portal: https://www.encodeproject.org/experiments/ENCSR081UQY/ *************** biological replicate number: 1 technical replicate number: 1 description: Input control ChIP-seq on embryonic 11.5 day mouse midbrain experiment encode accession: ENCSR081UQY assay title: ChIP-seq target: Control encode release date: 2014-06-30 lab: Bing Ren, UCSD library encode accession: ENCLB571UDK size range: 300-500 Mus musculus (B6NCrl) midbrain 0.6802 gs mixed sex embryo (11.5 days) ChIP-seq from midbrain (ENCLB571UDK) pooled male and female 11.5 day ENCBS228OBS (SAMN04284036) Midbrain of 109 embyronic 11.5 day mice embryonic healthy Len Pennacchio, LBNL ENCBS228OBS at ENCODE; https://www.encodeproject.org/ENCBS228OBS/ Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/ Protocol document; https://www.encodeproject.org/documents/631aa21c-8e48-467e-8cac-d40c875b3913/@@download/attachment/Tissue_Excision_Protocols_112414.pdf Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 midbrain EFO http://purl.obolibrary.org/obo/UBERON_0001891 tissue P-GSE82412-1 ArrayExpress GSM2191073 extract 1 Illumina HiSeq 2500 ChIP genomic ChIP-Seq genomic DNA GSM2191073 SRX1832888 Illumina HiSeq 2500 (Mus musculus) sequencing assay GSM2191073_ENCLB571UDK_README.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-82412/E-GEOD-82412.processed.1.zip ENCBS228OBS (SAMN04284036) Midbrain of 109 embyronic 11.5 day mice ENCBS228OBS at ENCODE; https://www.encodeproject.org/ENCBS228OBS/ GSM2191072 1 For full experimental details, see the ENCODE Portal: https://www.encodeproject.org/experiments/ENCSR081UQY/ *************** biological replicate number: 2 technical replicate number: 1 description: Input control ChIP-seq on embryonic 11.5 day mouse midbrain experiment encode accession: ENCSR081UQY assay title: ChIP-seq target: Control encode release date: 2014-06-30 lab: Bing Ren, UCSD library encode accession: ENCLB821WAE size range: 300-500 Mus musculus (B6NCrl) midbrain 0.4401 gs mixed sex embryo (11.5 days) ChIP-seq from midbrain (ENCLB821WAE) pooled male and female 11.5 day ENCBS802FTI (SAMN04284146) Midbrain from 88 embyronic 11.5 day mice embryonic healthy Len Pennacchio, LBNL ENCBS802FTI at ENCODE; https://www.encodeproject.org/ENCBS802FTI/ Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/ Protocol document; https://www.encodeproject.org/documents/631aa21c-8e48-467e-8cac-d40c875b3913/@@download/attachment/Tissue_Excision_Protocols_112414.pdf Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 midbrain EFO http://purl.obolibrary.org/obo/UBERON_0001891 tissue P-GSE82412-1 ArrayExpress GSM2191072 extract 1 Illumina HiSeq 2500 ChIP genomic ChIP-Seq genomic DNA GSM2191072 SRX1832887 Illumina HiSeq 2500 (Mus musculus) sequencing assay GSM2191072_ENCLB821WAE_README.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-82412/E-GEOD-82412.processed.1.zip ENCBS802FTI (SAMN04284146) Midbrain from 88 embyronic 11.5 day mice ENCBS802FTI at ENCODE; https://www.encodeproject.org/ENCBS802FTI/