Source Name	Comment [ENA_SAMPLE]	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [assayed molecule]	Term Source REF	Term Accession Number	Characteristics [cell type]	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [parental cell line id]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_LAYOUT]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Scan Name	Comment [ENA_RUN]	FactorValue [assayed molecule]	Term Source REF	Term Accession Number	FactorValue [genotype]	FactorValue [parental cell line id]
GSM2082532 1	SRS1326939	3R20 TSC2-cellModel_RPF.txt	TSC2-/- cell line generated from hESC cell line 3, RPF	Ribosome protected fragments (RPF) of TSC2-/- cell line generated from hESC cell line 3, Biological Replicate 2	Ribosome protected fragments	  	  	Embryonic stem cell-derived neurons	TSC2-/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.3	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082532 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082532	SRX1617556	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208875	SRR3208875	Ribosome protected fragments	  	  	TSC2-/-	hESC.3
GSM2082531 1	SRS1326940	3R19 TSC2-cellModel_RPF.txt	TSC2-/- cell line generated from hESC cell line 3, RPF	Ribosome protected fragments (RPF) of TSC2-/- cell line generated from hESC cell line 3, Biological Replicate 1	Ribosome protected fragments	  	  	Embryonic stem cell-derived neurons	TSC2-/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.3	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082531 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082531	SRX1617555	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208874	SRR3208874	Ribosome protected fragments	  	  	TSC2-/-	hESC.3
GSM2082530 1	SRS1326941	3R18 TSC2-cellModel_RPF.txt	TSC2+/- cell line generated from hESC cell line 3, RPF	Ribosome protected fragments (RPF) of TSC2+/- cell line generated from hESC cell line 3, Biological Replicate 2	Ribosome protected fragments	  	  	Embryonic stem cell-derived neurons	TSC2+/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.3	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082530 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082530	SRX1617554	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208873	SRR3208873	Ribosome protected fragments	  	  	TSC2+/-	hESC.3
GSM2082529 1	SRS1326942	3R17 TSC2-cellModel_RPF.txt	TSC2+/- cell line generated from hESC cell line 3, RPF	Ribosome protected fragments (RPF) of TSC2+/- cell line generated from hESC cell line 3, Biological Replicate 1	Ribosome protected fragments	  	  	Embryonic stem cell-derived neurons	TSC2+/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.3	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082529 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082529	SRX1617553	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208872	SRR3208872	Ribosome protected fragments	  	  	TSC2+/-	hESC.3
GSM2082528 1	SRS1326918	3R16 TSC2-cellModel_RPF.txt	TSC2+/+ control generated from hESC cell line 3, RPF	Ribosome protected fragments (RPF) of TSC2+/+ control generated from hESC cell line 3, Biological Replicate 2	Ribosome protected fragments	  	  	Embryonic stem cell-derived neurons	TSC2+/+	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.3	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082528 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082528	SRX1617552	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208871	SRR3208871	Ribosome protected fragments	  	  	TSC2+/+	hESC.3
GSM2082527 1	SRS1326919	3R15 TSC2-cellModel_RPF.txt	TSC2+/+ control generated from hESC cell line 3, RPF	Ribosome protected fragments (RPF) of TSC2+/+ control generated from hESC cell line 3, Biological Replicate 1	Ribosome protected fragments	  	  	Embryonic stem cell-derived neurons	TSC2+/+	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.3	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082527 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082527	SRX1617551	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208870	SRR3208870	Ribosome protected fragments	  	  	TSC2+/+	hESC.3
GSM2082526 1	SRS1326921	2R20 TSC2-cellModel_RPF.txt	TSC2-/- cell line generated from hESC cell line 2, RPF	Ribosome protected fragments (RPF) of TSC2-/- cell line generated from hESC cell line 2, Biological Replicate 2	Ribosome protected fragments	  	  	Embryonic stem cell-derived neurons	TSC2-/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.2	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082526 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082526	SRX1617550	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208869	SRR3208869	Ribosome protected fragments	  	  	TSC2-/-	hESC.2
GSM2082525 1	SRS1326920	2R19 TSC2-cellModel_RPF.txt	TSC2-/- cell line generated from hESC cell line 2, RPF	Ribosome protected fragments (RPF) of TSC2-/- cell line generated from hESC cell line 2, Biological Replicate 1	Ribosome protected fragments	  	  	Embryonic stem cell-derived neurons	TSC2-/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.2	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082525 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082525	SRX1617549	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208868	SRR3208868	Ribosome protected fragments	  	  	TSC2-/-	hESC.2
GSM2082524 1	SRS1326922	2R18 TSC2-cellModel_RPF.txt	TSC2+/- cell line generated from hESC cell line 2, RPF	Ribosome protected fragments (RPF) of TSC2+/- cell line generated from hESC cell line 2, Biological Replicate 2	Ribosome protected fragments	  	  	Embryonic stem cell-derived neurons	TSC2+/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.2	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082524 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082524	SRX1617548	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208867	SRR3208867	Ribosome protected fragments	  	  	TSC2+/-	hESC.2
GSM2082523 1	SRS1326923	2R17 TSC2-cellModel_RPF.txt	TSC2+/- cell line generated from hESC cell line 2, RPF	Ribosome protected fragments (RPF) of TSC2+/- cell line generated from hESC cell line 2, Biological Replicate 1	Ribosome protected fragments	  	  	Embryonic stem cell-derived neurons	TSC2+/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.2	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082523 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082523	SRX1617547	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208866	SRR3208866	Ribosome protected fragments	  	  	TSC2+/-	hESC.2
GSM2082522 1	SRS1326924	2R16 TSC2-cellModel_RPF.txt	TSC2+/+ control generated from hESC cell line 2, RPF	Ribosome protected fragments (RPF) of TSC2+/+ control generated from hESC cell line 2, Biological Replicate 2	Ribosome protected fragments	  	  	Embryonic stem cell-derived neurons	TSC2+/+	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.2	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082522 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082522	SRX1617546	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208865	SRR3208865	Ribosome protected fragments	  	  	TSC2+/+	hESC.2
GSM2082521 1	SRS1326925	2R15 TSC2-cellModel_RPF.txt	TSC2+/+ control generated from hESC cell line 2, RPF	Ribosome protected fragments (RPF) of TSC2+/+ control generated from hESC cell line 2, Biological Replicate 1	Ribosome protected fragments	  	  	Embryonic stem cell-derived neurons	TSC2+/+	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.2	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082521 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082521	SRX1617545	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208864	SRR3208864	Ribosome protected fragments	  	  	TSC2+/+	hESC.2
GSM2082520 1	SRS1326926	3T20 TSC2-cellModel_RNA.txt	TSC2-/- cell line generated from hESC cell line 3, total RNA	Total RNA of TSC2-/- cell line generated from hESC cell line 3, Biological Replicate 2	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	Embryonic stem cell-derived neurons	TSC2-/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.3	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082520 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082520	SRX1617544	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208863	SRR3208863	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	TSC2-/-	hESC.3
GSM2082519 1	SRS1326927	3T19 TSC2-cellModel_RNA.txt	TSC2-/- cell line generated from hESC cell line 3, total RNA	Total RNA of TSC2-/- cell line generated from hESC cell line 3, Biological Replicate 1	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	Embryonic stem cell-derived neurons	TSC2-/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.3	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082519 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082519	SRX1617543	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208862	SRR3208862	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	TSC2-/-	hESC.3
GSM2082518 1	SRS1326928	3T18 TSC2-cellModel_RNA.txt	TSC2+/- cell line generated from hESC cell line 3, total RNA	Total RNA of TSC2+/- cell line generated from hESC cell line 3, Biological Replicate 2	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	Embryonic stem cell-derived neurons	TSC2+/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.3	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082518 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082518	SRX1617542	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208861	SRR3208861	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	TSC2+/-	hESC.3
GSM2082517 1	SRS1326929	3T17 TSC2-cellModel_RNA.txt	TSC2+/- cell line generated from hESC cell line 3, total RNA	Total RNA of TSC2+/- cell line generated from hESC cell line 3, Biological Replicate 1	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	Embryonic stem cell-derived neurons	TSC2+/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.3	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082517 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082517	SRX1617541	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208860	SRR3208860	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	TSC2+/-	hESC.3
GSM2082516 1	SRS1326931	3T16 TSC2-cellModel_RNA.txt	TSC2+/+ control generated from hESC cell line 3, total RNA	Total RNA of TSC2+/+ control generated from hESC cell line 3, Biological Replicate 2	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	Embryonic stem cell-derived neurons	TSC2+/+	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.3	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082516 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082516	SRX1617540	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208859	SRR3208859	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	TSC2+/+	hESC.3
GSM2082515 1	SRS1326930	3T15 TSC2-cellModel_RNA.txt	TSC2+/+ control generated from hESC cell line 3, total RNA	Total RNA of TSC2+/+ control generated from hESC cell line 3, Biological Replicate 1	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	Embryonic stem cell-derived neurons	TSC2+/+	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.3	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082515 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082515	SRX1617539	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208858	SRR3208858	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	TSC2+/+	hESC.3
GSM2082514 1	SRS1326932	2T20 TSC2-cellModel_RNA.txt	TSC2-/- cell line generated from hESC cell line 2, total RNA	Total RNA of TSC2-/- cell line generated from hESC cell line 2, Biological Replicate 2	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	Embryonic stem cell-derived neurons	TSC2-/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.2	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082514 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082514	SRX1617538	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208857	SRR3208857	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	TSC2-/-	hESC.2
GSM2082513 1	SRS1326933	2T19 TSC2-cellModel_RNA.txt	TSC2-/- cell line generated from hESC cell line 2, total RNA	Total RNA of TSC2-/- cell line generated from hESC cell line 2, Biological Replicate 1	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	Embryonic stem cell-derived neurons	TSC2-/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.2	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082513 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082513	SRX1617537	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208856	SRR3208856	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	TSC2-/-	hESC.2
GSM2082512 1	SRS1326934	2T18 TSC2-cellModel_RNA.txt	TSC2+/- cell line generated from hESC cell line 2, total RNA	Total RNA of TSC2+/- cell line generated from hESC cell line 2, Biological Replicate 2	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	Embryonic stem cell-derived neurons	TSC2+/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.2	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082512 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082512	SRX1617536	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208855	SRR3208855	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	TSC2+/-	hESC.2
GSM2082511 1	SRS1326935	2T17 TSC2-cellModel_RNA.txt	TSC2+/- cell line generated from hESC cell line 2, total RNA	Total RNA of TSC2+/- cell line generated from hESC cell line 2, Biological Replicate 1	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	Embryonic stem cell-derived neurons	TSC2+/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.2	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082511 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082511	SRX1617535	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208854	SRR3208854	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	TSC2+/-	hESC.2
GSM2082510 1	SRS1326937	2T16 TSC2-cellModel_RNA.txt	TSC2+/+ control generated from hESC cell line 2, total RNA	Total RNA of TSC2+/+ control generated from hESC cell line 2, Biological Replicate 2	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	Embryonic stem cell-derived neurons	TSC2+/+	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.2	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082510 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082510	SRX1617534	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208853	SRR3208853	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	TSC2+/+	hESC.2
GSM2082509 1	SRS1326936	2T15 TSC2-cellModel_RNA.txt	TSC2+/+ control generated from hESC cell line 2, total RNA	Total RNA of TSC2+/+ control generated from hESC cell line 2, Biological Replicate 1	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	Embryonic stem cell-derived neurons	TSC2+/+	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	hESC.2	P-GSE78959-1	ArrayExpress	P-GSE78959-2	ArrayExpress	GSM2082509 extract 1	Illumina HiSeq 2500	SINGLE	cDNA	transcriptomic	RNA-Seq	total RNA	GSM2082509	SRX1617533	Illumina HiSeq 2500 (Homo sapiens)	sequencing assay	P-GSE78959-3	ArrayExpress	SRR3208852	SRR3208852	mRNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33699	TSC2+/+	hESC.2