Source Name Comment [Sample_characteristics] Comment [Sample_description] Comment [Sample_source_name] Characteristics[Organism] Term Source REF Term Accession Number Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Hybridization Name Array Design REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] GSM219983 1 Plate = 2; Grade = 3; Stage = 1; Vascular Invasion = 1; NPI = 4.3; ER status = Negative; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219983 extract 1 total RNA P-GSE7842-5 GSM219983 LE 1 Biotin P-GSE7842-6 GSM219983 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219983_sample_table.txt norm GSM219983_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219982 1 Plate = 2 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219982 extract 1 total RNA P-GSE7842-5 GSM219982 LE 1 Biotin P-GSE7842-6 GSM219982 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219982_sample_table.txt norm GSM219982_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219981 1 Plate = 2; Grade = 2; Stage = 2; Vascular Invasion = 1; NPI = 4.4; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219981 extract 1 total RNA P-GSE7842-5 GSM219981 LE 1 Biotin P-GSE7842-6 GSM219981 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219981_sample_table.txt norm GSM219981_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219980 1 Plate = 2; Grade = 2; Stage = 2; Vascular Invasion = 1; NPI = 4.4; ER status = Positive; Molecular subtype = Luminal B Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219980 extract 1 total RNA P-GSE7842-5 GSM219980 LE 1 Biotin P-GSE7842-6 GSM219980 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219980_sample_table.txt norm GSM219980_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219979 1 Plate = 2; Grade = 2; Stage = 1; Vascular Invasion = 2; NPI = 3.22; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219979 extract 1 total RNA P-GSE7842-5 GSM219979 LE 1 Biotin P-GSE7842-6 GSM219979 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219979_sample_table.txt norm GSM219979_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219978 1 Plate = 2; Grade = 2; Stage = 1; Vascular Invasion = 2; NPI = 3.3; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219978 extract 1 total RNA P-GSE7842-5 GSM219978 LE 1 Biotin P-GSE7842-6 GSM219978 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219978_sample_table.txt norm GSM219978_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219977 1 Plate = 2; Grade = 2; Stage = 1; Vascular Invasion = 2; NPI = 3.22; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219977 extract 1 total RNA P-GSE7842-5 GSM219977 LE 1 Biotin P-GSE7842-6 GSM219977 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219977_sample_table.txt norm GSM219977_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219976 1 Plate = 2; Grade = 2; Stage = 1; Vascular Invasion = 1; NPI = 3.3; ER status = Positive; Molecular subtype = Luminal B Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219976 extract 1 total RNA P-GSE7842-5 GSM219976 LE 1 Biotin P-GSE7842-6 GSM219976 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219976_sample_table.txt norm GSM219976_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219975 1 Plate = 2; Grade = 3; Stage = 3; Vascular Invasion = 2; NPI = 6.5; ER status = Negative; Molecular subtype = Normal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219975 extract 1 total RNA P-GSE7842-5 GSM219975 LE 1 Biotin P-GSE7842-6 GSM219975 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219975_sample_table.txt norm GSM219975_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219974 1 Plate = 2 Normal breast sample University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219974 extract 1 total RNA P-GSE7842-5 GSM219974 LE 1 Biotin P-GSE7842-6 GSM219974 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219974_sample_table.txt norm GSM219974_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219973 1 Plate = 2; Grade = 3; Stage = 1; Vascular Invasion = unknown; NPI = 4.4; ER status = Negative; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219973 extract 1 total RNA P-GSE7842-5 GSM219973 LE 1 Biotin P-GSE7842-6 GSM219973 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219973_sample_table.txt norm GSM219973_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219972 1 Plate = 2; Grade = 1; Stage = 2; Vascular Invasion = 3; NPI = 3.44; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219972 extract 1 total RNA P-GSE7842-5 GSM219972 LE 1 Biotin P-GSE7842-6 GSM219972 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219972_sample_table.txt norm GSM219972_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219971 1 Plate = 2 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219971 extract 1 total RNA P-GSE7842-5 GSM219971 LE 1 Biotin P-GSE7842-6 GSM219971 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219971_sample_table.txt norm GSM219971_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219970 1 Plate = 2; Grade = 3; Stage = 1; Vascular Invasion = 1; NPI = 4.7; ER status = Negative; Molecular subtype = Luminal B Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219970 extract 1 total RNA P-GSE7842-5 GSM219970 LE 1 Biotin P-GSE7842-6 GSM219970 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219970_sample_table.txt norm GSM219970_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219969 1 Plate = 2 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219969 extract 1 total RNA P-GSE7842-5 GSM219969 LE 1 Biotin P-GSE7842-6 GSM219969 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219969_sample_table.txt norm GSM219969_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219968 1 Plate = 2 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219968 extract 1 total RNA P-GSE7842-5 GSM219968 LE 1 Biotin P-GSE7842-6 GSM219968 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219968_sample_table.txt norm GSM219968_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219967 1 Plate = 2; Grade = 2; Stage = 1; Vascular Invasion = 1; NPI = 3.5; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219967 extract 1 total RNA P-GSE7842-5 GSM219967 LE 1 Biotin P-GSE7842-6 GSM219967 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219967_sample_table.txt norm GSM219967_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219966 1 Plate = 2 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219966 extract 1 total RNA P-GSE7842-5 GSM219966 LE 1 Biotin P-GSE7842-6 GSM219966 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219966_sample_table.txt norm GSM219966_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219965 1 Plate = 2; Grade = 2; Stage = 1; Vascular Invasion = 1; NPI = 3.18; ER status = Positive; Molecular subtype = Luminal B Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219965 extract 1 total RNA P-GSE7842-5 GSM219965 LE 1 Biotin P-GSE7842-6 GSM219965 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219965_sample_table.txt norm GSM219965_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219964 1 Plate = 2; Grade = 1; Stage = 1; Vascular Invasion = 1; NPI = 2.2; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219964 extract 1 total RNA P-GSE7842-5 GSM219964 LE 1 Biotin P-GSE7842-6 GSM219964 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219964_sample_table.txt norm GSM219964_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219963 1 Plate = 2; Grade = 2; Stage = 1; Vascular Invasion = 1; NPI = 3.36; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219963 extract 1 total RNA P-GSE7842-5 GSM219963 LE 1 Biotin P-GSE7842-6 GSM219963 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219963_sample_table.txt norm GSM219963_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219962 1 Plate = 2 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219962 extract 1 total RNA P-GSE7842-5 GSM219962 LE 1 Biotin P-GSE7842-6 GSM219962 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219962_sample_table.txt norm GSM219962_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219961 1 Plate = 2; Grade = 2; Stage = 1; Vascular Invasion = 2; NPI = 3.4; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219961 extract 1 total RNA P-GSE7842-5 GSM219961 LE 1 Biotin P-GSE7842-6 GSM219961 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219961_sample_table.txt norm GSM219961_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219960 1 Plate = 2; Grade = 2; Stage = 2; Vascular Invasion = 2; NPI = 4.34; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219960 extract 1 total RNA P-GSE7842-5 GSM219960 LE 1 Biotin P-GSE7842-6 GSM219960 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219960_sample_table.txt norm GSM219960_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219959 1 Plate = 2 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219959 extract 1 total RNA P-GSE7842-5 GSM219959 LE 1 Biotin P-GSE7842-6 GSM219959 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219959_sample_table.txt norm GSM219959_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219958 1 Plate = 2; Grade = 2; Stage = 3; Vascular Invasion = 1; NPI = 5.4; ER status = Positive; Molecular subtype = Normal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219958 extract 1 total RNA P-GSE7842-5 GSM219958 LE 1 Biotin P-GSE7842-6 GSM219958 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219958_sample_table.txt norm GSM219958_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219957 1 Plate = 2; Grade = 1; Stage = 1; Vascular Invasion = 2; NPI = 2.38; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219957 extract 1 total RNA P-GSE7842-5 GSM219957 LE 1 Biotin P-GSE7842-6 GSM219957 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219957_sample_table.txt norm GSM219957_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219956 1 Plate = 2 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219956 extract 1 total RNA P-GSE7842-5 GSM219956 LE 1 Biotin P-GSE7842-6 GSM219956 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219956_sample_table.txt norm GSM219956_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219955 1 Plate = 2; Grade = 3; Stage = 1; Vascular Invasion = 1; NPI = 4.3; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219955 extract 1 total RNA P-GSE7842-5 GSM219955 LE 1 Biotin P-GSE7842-6 GSM219955 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219955_sample_table.txt norm GSM219955_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219954 1 Plate = 2; Grade = 1; Stage = 1; Vascular Invasion = 2; NPI = 2.3; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219954 extract 1 total RNA P-GSE7842-5 GSM219954 LE 1 Biotin P-GSE7842-6 GSM219954 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219954_sample_table.txt norm GSM219954_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219953 1 Plate = 2; Grade = 1; Stage = 1; Vascular Invasion = 2; NPI = 2.24; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219953 extract 1 total RNA P-GSE7842-5 GSM219953 LE 1 Biotin P-GSE7842-6 GSM219953 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219953_sample_table.txt norm GSM219953_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219952 1 Plate = 2; Grade = 2; Stage = 1; Vascular Invasion = 1; NPI = 3.3; ER status = Negative; Molecular subtype = HER2+ Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219952 extract 1 total RNA P-GSE7842-5 GSM219952 LE 1 Biotin P-GSE7842-6 GSM219952 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219952_sample_table.txt norm GSM219952_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219951 1 Plate = 2; Grade = 2; Stage = 3; Vascular Invasion = 1; NPI = 5.34; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219951 extract 1 total RNA P-GSE7842-5 GSM219951 LE 1 Biotin P-GSE7842-6 GSM219951 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219951_sample_table.txt norm GSM219951_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219950 1 Plate = 2; Grade = 3; Stage = 1; Vascular Invasion = unknown; NPI = 4.02; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219950 extract 1 total RNA P-GSE7842-5 GSM219950 LE 1 Biotin P-GSE7842-6 GSM219950 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219950_sample_table.txt norm GSM219950_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219949 1 Plate = 2; Grade = 3; Stage = 1; Vascular Invasion = 1; NPI = 4.24; ER status = Negative; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219949 extract 1 total RNA P-GSE7842-5 GSM219949 LE 1 Biotin P-GSE7842-6 GSM219949 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219949_sample_table.txt norm GSM219949_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219948 1 Plate = 2; Grade = 1; Stage = 1; Vascular Invasion = 2; NPI = 2.4; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219948 extract 1 total RNA P-GSE7842-5 GSM219948 LE 1 Biotin P-GSE7842-6 GSM219948 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219948_sample_table.txt norm GSM219948_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219947 1 Plate = 2; Grade = 2; Stage = 1; Vascular Invasion = 2; NPI = 3.2; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219947 extract 1 total RNA P-GSE7842-5 GSM219947 LE 1 Biotin P-GSE7842-6 GSM219947 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219947_sample_table.txt norm GSM219947_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219946 1 Plate = 2 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219946 extract 1 total RNA P-GSE7842-5 GSM219946 LE 1 Biotin P-GSE7842-6 GSM219946 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219946_sample_table.txt norm GSM219946_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219945 1 Plate = 2; Grade = 2; Stage = 2; Vascular Invasion = 2; NPI = 4.42; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219945 extract 1 total RNA P-GSE7842-5 GSM219945 LE 1 Biotin P-GSE7842-6 GSM219945 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219945_sample_table.txt norm GSM219945_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219944 1 Plate = 2; Grade = 3; Stage = 3; Vascular Invasion = 3; NPI = 6.46; ER status = Positive; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219944 extract 1 total RNA P-GSE7842-5 GSM219944 LE 1 Biotin P-GSE7842-6 GSM219944 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219944_sample_table.txt norm GSM219944_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219943 1 Plate = 2; Grade = 3; Stage = 1; Vascular Invasion = 1; NPI = 4.48; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219943 extract 1 total RNA P-GSE7842-5 GSM219943 LE 1 Biotin P-GSE7842-6 GSM219943 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219943_sample_table.txt norm GSM219943_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219942 1 Plate = 2 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219942 extract 1 total RNA P-GSE7842-5 GSM219942 LE 1 Biotin P-GSE7842-6 GSM219942 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219942_sample_table.txt norm GSM219942_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219941 1 Plate = 2; Grade = 3; Stage = 2; Vascular Invasion = 2; NPI = 5.24; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219941 extract 1 total RNA P-GSE7842-5 GSM219941 LE 1 Biotin P-GSE7842-6 GSM219941 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219941_sample_table.txt norm GSM219941_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219940 1 Plate = 2; Grade = 3; Stage = 1; Vascular Invasion = 2; NPI = 4.44; ER status = Positive; Molecular subtype = Luminal B Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219940 extract 1 total RNA P-GSE7842-5 GSM219940 LE 1 Biotin P-GSE7842-6 GSM219940 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219940_sample_table.txt norm GSM219940_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219939 1 Plate = 2; Grade = 3; Stage = 1; Vascular Invasion = 1; NPI = 4.5; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219939 extract 1 total RNA P-GSE7842-5 GSM219939 LE 1 Biotin P-GSE7842-6 GSM219939 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219939_sample_table.txt norm GSM219939_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219938 1 Plate = 2; Grade = 3; Stage = 1; Vascular Invasion = 1; NPI = 4.5; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219938 extract 1 total RNA P-GSE7842-5 GSM219938 LE 1 Biotin P-GSE7842-6 GSM219938 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219938_sample_table.txt norm GSM219938_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219937 1 Plate = 2; Grade = 3; Stage = 2; Vascular Invasion = 1; NPI = 5.36; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219937 extract 1 total RNA P-GSE7842-5 GSM219937 LE 1 Biotin P-GSE7842-6 GSM219937 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219937_sample_table.txt norm GSM219937_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219936 1 Plate = 2; Grade = 3; Stage = 1; Vascular Invasion = 1; NPI = 4.5; ER status = Negative; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219936 extract 1 total RNA P-GSE7842-5 GSM219936 LE 1 Biotin P-GSE7842-6 GSM219936 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219936_sample_table.txt norm GSM219936_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219935 1 Plate = 2; Grade = 3; Stage = 1; Vascular Invasion = 1; NPI = 4.44; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219935 extract 1 total RNA P-GSE7842-5 GSM219935 LE 1 Biotin P-GSE7842-6 GSM219935 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219935_sample_table.txt norm GSM219935_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219934 1 Plate = 2; Grade = 3; Stage = 1; Vascular Invasion = 1; NPI = 4.4; ER status = Negative; Molecular subtype = HER2+ Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219934 extract 1 total RNA P-GSE7842-5 GSM219934 LE 1 Biotin P-GSE7842-6 GSM219934 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219934_sample_table.txt norm GSM219934_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219933 1 Plate = 2; Grade = 1; Stage = 2; Vascular Invasion = 1; NPI = 3.6; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219933 extract 1 total RNA P-GSE7842-5 GSM219933 LE 1 Biotin P-GSE7842-6 GSM219933 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219933_sample_table.txt norm GSM219933_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219932 1 Plate = 1,2; Grade = 2; Stage = 2; Vascular Invasion = 1; NPI = 4.28; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219932 extract 1 total RNA P-GSE7842-5 GSM219932 LE 1 Biotin P-GSE7842-6 GSM219932 A-GEOD-5173 P-GSE7842-2 P-GSE7842-7 P-GSE7842-8 GSM219932_sample_table.txt norm GSM219932_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219931 1 Plate = 1,2,2 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219931 extract 1 total RNA P-GSE7842-5 GSM219931 LE 1 Biotin P-GSE7842-6 GSM219931 A-GEOD-5173 P-GSE7842-3 P-GSE7842-7 P-GSE7842-8 GSM219931_sample_table.txt norm GSM219931_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219930 1 Plate = 1,2,2 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219930 extract 1 total RNA P-GSE7842-5 GSM219930 LE 1 Biotin P-GSE7842-6 GSM219930 A-GEOD-5173 P-GSE7842-3 P-GSE7842-7 P-GSE7842-8 GSM219930_sample_table.txt norm GSM219930_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219929 1 Plate = 1,2,2 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219929 extract 1 total RNA P-GSE7842-5 GSM219929 LE 1 Biotin P-GSE7842-6 GSM219929 A-GEOD-5173 P-GSE7842-3 P-GSE7842-7 P-GSE7842-8 GSM219929_sample_table.txt norm GSM219929_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219928 1 Plate = 1,2,2 Normal breast sample University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219928 extract 1 total RNA P-GSE7842-5 GSM219928 LE 1 Biotin P-GSE7842-6 GSM219928 A-GEOD-5173 P-GSE7842-3 P-GSE7842-7 P-GSE7842-8 GSM219928_sample_table.txt norm GSM219928_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219927 1 Plate = 1,2,2; Grade = 3; Stage = 2; Vascular Invasion = 3; NPI = 5.74; ER status = Negative; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219927 extract 1 total RNA P-GSE7842-5 GSM219927 LE 1 Biotin P-GSE7842-6 GSM219927 A-GEOD-5173 P-GSE7842-3 P-GSE7842-7 P-GSE7842-8 GSM219927_sample_table.txt norm GSM219927_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219926 1 Plate = 1,2; Grade = 2; Stage = 2; Vascular Invasion = 1; NPI = 4.3; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219926 extract 1 total RNA P-GSE7842-5 GSM219926 LE 1 Biotin P-GSE7842-6 GSM219926 A-GEOD-5173 P-GSE7842-2 P-GSE7842-7 P-GSE7842-8 GSM219926_sample_table.txt norm GSM219926_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219925 1 Plate = 1,2,2; Grade = 1; Stage = 3; Vascular Invasion = 2; NPI = 4.24; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219925 extract 1 total RNA P-GSE7842-5 GSM219925 LE 1 Biotin P-GSE7842-6 GSM219925 A-GEOD-5173 P-GSE7842-3 P-GSE7842-7 P-GSE7842-8 GSM219925_sample_table.txt norm GSM219925_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219924 1 Plate = 1; Grade = 2; Stage = 1; Vascular Invasion = 1; NPI = 3.18; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219924 extract 1 total RNA P-GSE7842-5 GSM219924 LE 1 Biotin P-GSE7842-6 GSM219924 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219924_sample_table.txt norm GSM219924_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219923 1 Plate = 1; Grade = 1; Stage = 2; Vascular Invasion = 3; NPI = 3.4; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219923 extract 1 total RNA P-GSE7842-5 GSM219923 LE 1 Biotin P-GSE7842-6 GSM219923 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219923_sample_table.txt norm GSM219923_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219922 1 Plate = 1; Grade = 3; Stage = 2; Vascular Invasion = 1; NPI = 5.5; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219922 extract 1 total RNA P-GSE7842-5 GSM219922 LE 1 Biotin P-GSE7842-6 GSM219922 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219922_sample_table.txt norm GSM219922_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219921 1 Plate = 1; Grade = 2; Stage = 2; Vascular Invasion = 3; NPI = 4.5; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219921 extract 1 total RNA P-GSE7842-5 GSM219921 LE 1 Biotin P-GSE7842-6 GSM219921 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219921_sample_table.txt norm GSM219921_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219920 1 Plate = 1; Grade = 2; Stage = 1; Vascular Invasion = 2; NPI = 3.2; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219920 extract 1 total RNA P-GSE7842-5 GSM219920 LE 1 Biotin P-GSE7842-6 GSM219920 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219920_sample_table.txt norm GSM219920_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219919 1 Plate = 1; Grade = 2; Stage = 1; Vascular Invasion = 2; NPI = 3.26; ER status = Positive; Molecular subtype = Normal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219919 extract 1 total RNA P-GSE7842-5 GSM219919 LE 1 Biotin P-GSE7842-6 GSM219919 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219919_sample_table.txt norm GSM219919_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219918 1 Plate = 1; Grade = 3; Stage = 2; Vascular Invasion = 2; NPI = 5.68; ER status = Negative; Molecular subtype = HER2+ Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219918 extract 1 total RNA P-GSE7842-5 GSM219918 LE 1 Biotin P-GSE7842-6 GSM219918 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219918_sample_table.txt norm GSM219918_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219917 1 Plate = 1; Grade = 2; Stage = 1; Vascular Invasion = 1; NPI = 3.3; ER status = Negative; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219917 extract 1 total RNA P-GSE7842-5 GSM219917 LE 1 Biotin P-GSE7842-6 GSM219917 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219917_sample_table.txt norm GSM219917_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219916 1 Plate = 1 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219916 extract 1 total RNA P-GSE7842-5 GSM219916 LE 1 Biotin P-GSE7842-6 GSM219916 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219916_sample_table.txt norm GSM219916_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219915 1 Plate = 1; Grade = 3; Stage = 2; Vascular Invasion = 2; NPI = 5.5; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219915 extract 1 total RNA P-GSE7842-5 GSM219915 LE 1 Biotin P-GSE7842-6 GSM219915 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219915_sample_table.txt norm GSM219915_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219914 1 Plate = 1; Grade = 2; Stage = 1; Vascular Invasion = 2; NPI = 3.3; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219914 extract 1 total RNA P-GSE7842-5 GSM219914 LE 1 Biotin P-GSE7842-6 GSM219914 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219914_sample_table.txt norm GSM219914_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219913 1 Plate = 1; Grade = 3; Stage = 1; Vascular Invasion = 2; NPI = 4.34; ER status = Positive; Molecular subtype = Luminal B Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219913 extract 1 total RNA P-GSE7842-5 GSM219913 LE 1 Biotin P-GSE7842-6 GSM219913 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219913_sample_table.txt norm GSM219913_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219912 1 Plate = 1; Grade = 3; Stage = 3; Vascular Invasion = 1; NPI = 6.5; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219912 extract 1 total RNA P-GSE7842-5 GSM219912 LE 1 Biotin P-GSE7842-6 GSM219912 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219912_sample_table.txt norm GSM219912_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219911 1 Plate = 1; Grade = 3; Stage = 1; Vascular Invasion = 1; NPI = 4.6; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219911 extract 1 total RNA P-GSE7842-5 GSM219911 LE 1 Biotin P-GSE7842-6 GSM219911 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219911_sample_table.txt norm GSM219911_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219910 1 Plate = 1; Grade = 3; Stage = 1; Vascular Invasion = 1; NPI = 4.3; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219910 extract 1 total RNA P-GSE7842-5 GSM219910 LE 1 Biotin P-GSE7842-6 GSM219910 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219910_sample_table.txt norm GSM219910_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219909 1 Plate = 1; Grade = 2; Stage = 1; Vascular Invasion = 3; NPI = 3.2; ER status = Positive; Molecular subtype = Normal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219909 extract 1 total RNA P-GSE7842-5 GSM219909 LE 1 Biotin P-GSE7842-6 GSM219909 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219909_sample_table.txt norm GSM219909_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219908 1 Plate = 1; Grade = 2; Stage = 2; Vascular Invasion = 2; NPI = 4.34; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219908 extract 1 total RNA P-GSE7842-5 GSM219908 LE 1 Biotin P-GSE7842-6 GSM219908 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219908_sample_table.txt norm GSM219908_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219907 1 Plate = 1; Grade = 1; Stage = 1; Vascular Invasion = 1; NPI = 2.3; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219907 extract 1 total RNA P-GSE7842-5 GSM219907 LE 1 Biotin P-GSE7842-6 GSM219907 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219907_sample_table.txt norm GSM219907_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219906 1 Plate = 1 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219906 extract 1 total RNA P-GSE7842-5 GSM219906 LE 1 Biotin P-GSE7842-6 GSM219906 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219906_sample_table.txt norm GSM219906_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219905 1 Plate = 1; Grade = 2; Stage = 2; Vascular Invasion = 2; NPI = 4.34; ER status = Negative; Molecular subtype = HER2+ Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219905 extract 1 total RNA P-GSE7842-5 GSM219905 LE 1 Biotin P-GSE7842-6 GSM219905 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219905_sample_table.txt norm GSM219905_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219904 1 Plate = 1; Grade = 1; Stage = 1; Vascular Invasion = 2; NPI = 2.4; ER status = Negative; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219904 extract 1 total RNA P-GSE7842-5 GSM219904 LE 1 Biotin P-GSE7842-6 GSM219904 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219904_sample_table.txt norm GSM219904_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219903 1 Plate = 1; Grade = 3; Stage = 2; Vascular Invasion = 1; NPI = 5.4; ER status = Positive; Molecular subtype = Luminal B Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219903 extract 1 total RNA P-GSE7842-5 GSM219903 LE 1 Biotin P-GSE7842-6 GSM219903 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219903_sample_table.txt norm GSM219903_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219902 1 Plate = 1; Grade = 3; Stage = 1; Vascular Invasion = 2; NPI = 4.6; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219902 extract 1 total RNA P-GSE7842-5 GSM219902 LE 1 Biotin P-GSE7842-6 GSM219902 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219902_sample_table.txt norm GSM219902_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219901 1 Plate = 1; Grade = 1; Stage = 1; Vascular Invasion = 2; NPI = 2.32; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219901 extract 1 total RNA P-GSE7842-5 GSM219901 LE 1 Biotin P-GSE7842-6 GSM219901 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219901_sample_table.txt norm GSM219901_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219900 1 Plate = 1; Grade = 2; Stage = 3; Vascular Invasion = 1; NPI = 5.48; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219900 extract 1 total RNA P-GSE7842-5 GSM219900 LE 1 Biotin P-GSE7842-6 GSM219900 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219900_sample_table.txt norm GSM219900_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219899 1 Plate = 1; Grade = 3; Stage = 1; Vascular Invasion = 2; NPI = 4.4; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219899 extract 1 total RNA P-GSE7842-5 GSM219899 LE 1 Biotin P-GSE7842-6 GSM219899 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219899_sample_table.txt norm GSM219899_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219898 1 Plate = 1,1,2; Grade = 2; Stage = 2; Vascular Invasion = 2; NPI = 4.6; ER status = Negative; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219898 extract 1 total RNA P-GSE7842-5 GSM219898 LE 1 Biotin P-GSE7842-6 GSM219898 A-GEOD-5173 P-GSE7842-3 P-GSE7842-7 P-GSE7842-8 GSM219898_sample_table.txt norm GSM219898_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219897 1 Plate = 1 Normal breast sample University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219897 extract 1 total RNA P-GSE7842-5 GSM219897 LE 1 Biotin P-GSE7842-6 GSM219897 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219897_sample_table.txt norm GSM219897_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219896 1 Plate = 1; Grade = 1; Stage = 1; Vascular Invasion = 2; NPI = 2.5; ER status = Positive; Molecular subtype = Normal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219896 extract 1 total RNA P-GSE7842-5 GSM219896 LE 1 Biotin P-GSE7842-6 GSM219896 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219896_sample_table.txt norm GSM219896_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219895 1 Plate = 1,1,2; Grade = 3; Stage = 1; Vascular Invasion = 1; NPI = 4.36; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219895 extract 1 total RNA P-GSE7842-5 GSM219895 LE 1 Biotin P-GSE7842-6 GSM219895 A-GEOD-5173 P-GSE7842-3 P-GSE7842-7 P-GSE7842-8 GSM219895_sample_table.txt norm GSM219895_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219894 1 Plate = 1; Grade = 2; Stage = 1; Vascular Invasion = 3; NPI = 3.34; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219894 extract 1 total RNA P-GSE7842-5 GSM219894 LE 1 Biotin P-GSE7842-6 GSM219894 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219894_sample_table.txt norm GSM219894_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219893 1 Plate = 1; Grade = 3; Stage = 2; Vascular Invasion = 2; NPI = 5.26; ER status = Negative; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219893 extract 1 total RNA P-GSE7842-5 GSM219893 LE 1 Biotin P-GSE7842-6 GSM219893 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219893_sample_table.txt norm GSM219893_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219892 1 Plate = 1; Grade = 1; Stage = 1; Vascular Invasion = 1; NPI = 2.42; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219892 extract 1 total RNA P-GSE7842-5 GSM219892 LE 1 Biotin P-GSE7842-6 GSM219892 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219892_sample_table.txt norm GSM219892_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219891 1 Plate = 1,1,2 Normal breast sample University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219891 extract 1 total RNA P-GSE7842-5 GSM219891 LE 1 Biotin P-GSE7842-6 GSM219891 A-GEOD-5173 P-GSE7842-3 P-GSE7842-7 P-GSE7842-8 GSM219891_sample_table.txt norm GSM219891_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219890 1 Plate = 1 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219890 extract 1 total RNA P-GSE7842-5 GSM219890 LE 1 Biotin P-GSE7842-6 GSM219890 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219890_sample_table.txt norm GSM219890_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219889 1 Plate = 1; Grade = 1; Stage = 1; Vascular Invasion = 2; NPI = 2.3; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219889 extract 1 total RNA P-GSE7842-5 GSM219889 LE 1 Biotin P-GSE7842-6 GSM219889 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219889_sample_table.txt norm GSM219889_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219888 1 Plate = 1 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219888 extract 1 total RNA P-GSE7842-5 GSM219888 LE 1 Biotin P-GSE7842-6 GSM219888 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219888_sample_table.txt norm GSM219888_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219887 1 Plate = 1; Grade = 3; Stage = 1; Vascular Invasion = 3; NPI = 4.34; ER status = Positive; Molecular subtype = HER2+ Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219887 extract 1 total RNA P-GSE7842-5 GSM219887 LE 1 Biotin P-GSE7842-6 GSM219887 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219887_sample_table.txt norm GSM219887_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219886 1 Plate = 1; Grade = 1; Stage = 2; Vascular Invasion = 2; NPI = 3.5; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219886 extract 1 total RNA P-GSE7842-5 GSM219886 LE 1 Biotin P-GSE7842-6 GSM219886 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219886_sample_table.txt norm GSM219886_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219885 1 Plate = 1; Grade = 3; Stage = 1; Vascular Invasion = 2; NPI = 4.4; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219885 extract 1 total RNA P-GSE7842-5 GSM219885 LE 1 Biotin P-GSE7842-6 GSM219885 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219885_sample_table.txt norm GSM219885_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219884 1 Plate = 1,1,2; Grade = 3; Stage = 1; Vascular Invasion = 1; NPI = 4.5; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219884 extract 1 total RNA P-GSE7842-5 GSM219884 LE 1 Biotin P-GSE7842-6 GSM219884 A-GEOD-5173 P-GSE7842-3 P-GSE7842-7 P-GSE7842-8 GSM219884_sample_table.txt norm GSM219884_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219883 1 Plate = 1; Grade = 2; Stage = 1; Vascular Invasion = 2; NPI = 3.3; ER status = Negative; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219883 extract 1 total RNA P-GSE7842-5 GSM219883 LE 1 Biotin P-GSE7842-6 GSM219883 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219883_sample_table.txt norm GSM219883_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219882 1 Plate = 1; Grade = 1; Stage = 1; Vascular Invasion = unknown; NPI = 2.3; ER status = Positive; Molecular subtype = Normal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219882 extract 1 total RNA P-GSE7842-5 GSM219882 LE 1 Biotin P-GSE7842-6 GSM219882 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219882_sample_table.txt norm GSM219882_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219881 1 Plate = 1; Grade = 3; Stage = 2; Vascular Invasion = 2; NPI = 5.6; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219881 extract 1 total RNA P-GSE7842-5 GSM219881 LE 1 Biotin P-GSE7842-6 GSM219881 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219881_sample_table.txt norm GSM219881_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219880 1 Plate = 1; Grade = 2; Stage = 3; Vascular Invasion = 2; NPI = 5.38; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219880 extract 1 total RNA P-GSE7842-5 GSM219880 LE 1 Biotin P-GSE7842-6 GSM219880 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219880_sample_table.txt norm GSM219880_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219879 1 Plate = 1; Grade = 3; Stage = 1; Vascular Invasion = 2; NPI = 4.56; ER status = Positive; Molecular subtype = Luminal B Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219879 extract 1 total RNA P-GSE7842-5 GSM219879 LE 1 Biotin P-GSE7842-6 GSM219879 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219879_sample_table.txt norm GSM219879_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219878 1 Plate = 1 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219878 extract 1 total RNA P-GSE7842-5 GSM219878 LE 1 Biotin P-GSE7842-6 GSM219878 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219878_sample_table.txt norm GSM219878_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219877 1 Plate = 1; Grade = 3; Stage = 1; Vascular Invasion = 2; NPI = 4.34; ER status = Negative; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219877 extract 1 total RNA P-GSE7842-5 GSM219877 LE 1 Biotin P-GSE7842-6 GSM219877 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219877_sample_table.txt norm GSM219877_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219876 1 Plate = 1 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219876 extract 1 total RNA P-GSE7842-5 GSM219876 LE 1 Biotin P-GSE7842-6 GSM219876 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219876_sample_table.txt norm GSM219876_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219875 1 Plate = 1 Normal breast sample University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219875 extract 1 total RNA P-GSE7842-5 GSM219875 LE 1 Biotin P-GSE7842-6 GSM219875 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219875_sample_table.txt norm GSM219875_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219874 1 Plate = 1 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219874 extract 1 total RNA P-GSE7842-5 GSM219874 LE 1 Biotin P-GSE7842-6 GSM219874 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219874_sample_table.txt norm GSM219874_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219873 1 Plate = 1 Breast cancer cell line University of Cambridge Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219873 extract 1 total RNA P-GSE7842-5 GSM219873 LE 1 Biotin P-GSE7842-6 GSM219873 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219873_sample_table.txt norm GSM219873_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219872 1 Plate = 1; Grade = 3; Stage = 1; Vascular Invasion = 2; NPI = 4.7; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219872 extract 1 total RNA P-GSE7842-5 GSM219872 LE 1 Biotin P-GSE7842-6 GSM219872 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219872_sample_table.txt norm GSM219872_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219871 1 Plate = 1,2; Grade = 3; Stage = 2; Vascular Invasion = 1; NPI = 5.4; ER status = Positive; Molecular subtype = Luminal B Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219871 extract 1 total RNA P-GSE7842-5 GSM219871 LE 1 Biotin P-GSE7842-6 GSM219871 A-GEOD-5173 P-GSE7842-2 P-GSE7842-7 P-GSE7842-8 GSM219871_sample_table.txt norm GSM219871_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219870 1 Plate = 1; Grade = 2; Stage = 1; Vascular Invasion = 2; NPI = 3.44; ER status = Positive; Molecular subtype = Luminal A Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219870 extract 1 total RNA P-GSE7842-5 GSM219870 LE 1 Biotin P-GSE7842-6 GSM219870 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219870_sample_table.txt norm GSM219870_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219869 1 Plate = 1; Grade = 1; Stage = 1; Vascular Invasion = 2; NPI = 2.3; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219869 extract 1 total RNA P-GSE7842-5 GSM219869 LE 1 Biotin P-GSE7842-6 GSM219869 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219869_sample_table.txt norm GSM219869_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219868 1 Plate = 1; Grade = 1; Stage = 1; Vascular Invasion = 2; NPI = 2.44; ER status = Negative; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219868 extract 1 total RNA P-GSE7842-5 GSM219868 LE 1 Biotin P-GSE7842-6 GSM219868 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219868_sample_table.txt norm GSM219868_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219867 1 Plate = 1; Grade = 2; Stage = 1; Vascular Invasion = 1; NPI = 3.44; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219867 extract 1 total RNA P-GSE7842-5 GSM219867 LE 1 Biotin P-GSE7842-6 GSM219867 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219867_sample_table.txt norm GSM219867_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219866 1 Plate = 1; Grade = 1; Stage = 1; Vascular Invasion = 1; NPI = 2.3; ER status = Positive; Molecular subtype = unknown Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219866 extract 1 total RNA P-GSE7842-5 GSM219866 LE 1 Biotin P-GSE7842-6 GSM219866 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219866_sample_table.txt norm GSM219866_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip GSM219865 1 Plate = 1; Grade = 3; Stage = 3; Vascular Invasion = 1; NPI = 6.36; ER status = Negative; Molecular subtype = Basal-like Primary breast tumour Nottingham City Hospital Tumour Bank Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 P-GSE7842-4 GSM219865 extract 1 total RNA P-GSE7842-5 GSM219865 LE 1 Biotin P-GSE7842-6 GSM219865 A-GEOD-5173 P-GSE7842-1 P-GSE7842-7 P-GSE7842-8 GSM219865_sample_table.txt norm GSM219865_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-7842/E-GEOD-7842.processed.1.zip