Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [day of differentiation] Term Source REF Term Accession Number Characteristics [normal/tumor] Characteristics [organism] Term Source REF Term Accession Number Protocol REF Term Source REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Comment [ENA_EXPERIMENT] Comment [Platform_title] Technology Type Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [day of differentiation] Term Source REF Term Accession Number FactorValue [normal/tumor] GSM1697918 1 Input for Samples 8-11 Input from samples 8-11 hMe-Seal combined patient input N/A N/A Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE69333-1 ArrayExpress GSM1697918 extract 1 Illumina HiSeq 2000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1697918 SRX1041887 Illumina HiSeq 2000 (Homo sapiens) sequencing assay GSM1697918_MACS_JK1_control_afterfiting_all.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-69333/E-GEOD-69333.processed.1.zip N/A N/A GSM1697917 1 Tumor biopsy; colonocyte fraction Primary patient sample hMe-Seal: T2 N/A Tumor 2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE69333-1 ArrayExpress GSM1697917 extract 1 Illumina HiSeq 2000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1697917 SRX1041886 Illumina HiSeq 2000 (Homo sapiens) sequencing assay GSM1697917_MACS_JK4_treat_afterfiting_all.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-69333/E-GEOD-69333.processed.2.zip N/A Tumor 2 GSM1697916 1 Adjacent normal biopsy; colonocyte fraction; matched normal for sample 11 Primary patient sample hMe-Seal: N2 N/A Normal 2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE69333-1 ArrayExpress GSM1697916 extract 1 Illumina HiSeq 2000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1697916 SRX1041885 Illumina HiSeq 2000 (Homo sapiens) sequencing assay GSM1697916_MACS_JK3_treat_afterfiting_all.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-69333/E-GEOD-69333.processed.3.zip N/A Normal 2 GSM1697915 1 Tumor biopsy; colonocyte fraction Primary patient sample hMe-Seal: T1 N/A Tumor 1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE69333-1 ArrayExpress GSM1697915 extract 1 Illumina HiSeq 2000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1697915 SRX1041884 Illumina HiSeq 2000 (Homo sapiens) sequencing assay GSM1697915_MACS_JK2_treat_afterfiting_all.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-69333/E-GEOD-69333.processed.4.zip N/A Tumor 1 GSM1697914 1 Adjacent normal biopsy; colonocyte fraction; matched normal for sample 9 Primary patient sample hMe-Seal: N1 N/A Normal 1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE69333-1 ArrayExpress GSM1697914 extract 1 Illumina HiSeq 2000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1697914 SRX1041883 Illumina HiSeq 2000 (Homo sapiens) sequencing assay GSM1697914_MACS_JK1_treat_afterfiting_all.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-69333/E-GEOD-69333.processed.5.zip N/A Normal 1 GSM1697911 1 Input for Samples 1-4 Input for samples 1-4 hMe-Seal input input N/A Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE69333-1 ArrayExpress GSM1697911 extract 1 Illumina HiSeq 2000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1697911 SRX1041880 Illumina HiSeq 2000 (Homo sapiens) sequencing assay GSM1697911_MACS_withInput_JK-6_control_afterfiting_all.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-69333/E-GEOD-69333.processed.6.zip input N/A GSM1697910 1 5-hmC mapping in differentiating T84 cells; d15 Differentiating T84 Cells hMe-Seal: d15 d15 N/A Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE69333-1 ArrayExpress GSM1697910 extract 1 Illumina HiSeq 2000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1697910 SRX1041879 Illumina HiSeq 2000 (Homo sapiens) sequencing assay GSM1697910_MACS_withInput_JK-6_treat_afterfiting_all.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-69333/E-GEOD-69333.processed.7.zip d15 N/A GSM1697909 1 5-hmC mapping in differentiating T84 cells; d12 Differentiating T84 Cells hMe-Seal: d12 d12 N/A Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE69333-1 ArrayExpress GSM1697909 extract 1 Illumina HiSeq 2000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1697909 SRX1041878 Illumina HiSeq 2000 (Homo sapiens) sequencing assay GSM1697909_MACS_withInput_JK-5_treat_afterfiting_all.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-69333/E-GEOD-69333.processed.8.zip d12 N/A GSM1697908 1 5-hmC mapping in differentiating T84 cells; d4 Differentiating T84 Cells hMe-Seal: d4 D4 EFO EFO_0002051 N/A Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE69333-1 ArrayExpress GSM1697908 extract 1 Illumina HiSeq 2000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1697908 SRX1041877 Illumina HiSeq 2000 (Homo sapiens) sequencing assay GSM1697908_MACS_withInput_JK-4_treat_afterfiting_all.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-69333/E-GEOD-69333.processed.9.zip D4 EFO EFO_0002051 N/A GSM1697907 1 5-hmC mapping in differentiating T84 cells; d0 Differentiating T84 Cells hMe-Seal: d0 d0 N/A Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE69333-1 ArrayExpress GSM1697907 extract 1 Illumina HiSeq 2000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1697907 SRX1041876 Illumina HiSeq 2000 (Homo sapiens) sequencing assay GSM1697907_MACS_withInput_JK-1_treat_afterfiting_all.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-69333/E-GEOD-69333.processed.10.zip d0 N/A GSM1697913 1 RNA-seq of differentiating T84 cells; d15 Differentiating T84 Cells RNA-Seq: d15 d15 N/A Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE69333-1 ArrayExpress GSM1697913 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1697913 SRX1041882 Illumina HiSeq 2000 (Homo sapiens) sequencing assay d15 N/A GSM1697912 1 RNA-seq of differentiating T84 cells; d0 Differentiating T84 Cells RNA-Seq: d0 d0 N/A Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE69333-1 ArrayExpress GSM1697912 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1697912 SRX1041881 Illumina HiSeq 2000 (Homo sapiens) sequencing assay d0 N/A