Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell line]	Term Source REF	Term Accession Number	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [transgene]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [treatment]	Term Source REF	Term Accession Number
GSM1645162 1	Gene expression data from GFP#3 clone, 96 h after treatment with non-targeting control siRNAs total RNA (>200 nt)	Flp-In??? T-REx??? 293	6_GFPscr	HEK293	EFO	EFO_0001182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	GFP	P-GSE67348-2	ArrayExpress	P-GSE67348-3	ArrayExpress	P-GSE67348-4	ArrayExpress	GSM1645162 extract 1	total RNA	P-GSE67348-5	ArrayExpress	GSM1645162 LE 1	Biotin	P-GSE67348-6	ArrayExpress	GSM1645162	A-AFFY-44	ArrayExpress	array assay	P-GSE67348-7	ArrayExpress	GSM1645162_6_GFPscr.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-67348/E-GEOD-67348.raw.1.zip	P-GSE67348-1	ArrayExpress	GSM1645162_sample_table.txt norm	GSM1645162_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-67348/E-GEOD-67348.processed.1.zip	control	EFO	EFO_0001461
GSM1645161 1	Gene expression data from GFP#2 clone, 96 h after treatment with non-targeting control siRNAs total RNA (>200 nt)	Flp-In??? T-REx??? 293	5_GFPscr	HEK293	EFO	EFO_0001182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	GFP	P-GSE67348-2	ArrayExpress	P-GSE67348-3	ArrayExpress	P-GSE67348-4	ArrayExpress	GSM1645161 extract 1	total RNA	P-GSE67348-5	ArrayExpress	GSM1645161 LE 1	Biotin	P-GSE67348-6	ArrayExpress	GSM1645161	A-AFFY-44	ArrayExpress	array assay	P-GSE67348-7	ArrayExpress	GSM1645161_5_GFPscr.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-67348/E-GEOD-67348.raw.1.zip	P-GSE67348-1	ArrayExpress	GSM1645161_sample_table.txt norm	GSM1645161_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-67348/E-GEOD-67348.processed.1.zip	control	EFO	EFO_0001461
GSM1645160 1	Gene expression data from GFP#1 clone, 96 h after treatment with non-targeting control siRNAs total RNA (>200 nt)	Flp-In??? T-REx??? 293	4_GFPscr	HEK293	EFO	EFO_0001182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	GFP	P-GSE67348-2	ArrayExpress	P-GSE67348-3	ArrayExpress	P-GSE67348-4	ArrayExpress	GSM1645160 extract 1	total RNA	P-GSE67348-5	ArrayExpress	GSM1645160 LE 1	Biotin	P-GSE67348-6	ArrayExpress	GSM1645160	A-AFFY-44	ArrayExpress	array assay	P-GSE67348-7	ArrayExpress	GSM1645160_4_GFPscr.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-67348/E-GEOD-67348.raw.1.zip	P-GSE67348-1	ArrayExpress	GSM1645160_sample_table.txt norm	GSM1645160_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-67348/E-GEOD-67348.processed.1.zip	control	EFO	EFO_0001461
GSM1645159 1	Gene expression data from GFP#3 clone, 96 h after simultaneous siRNA-mediated knockdown of TET1, TET2, TET3 total RNA (>200 nt)	Flp-In??? T-REx??? 293	3_GFPsiRNA	HEK293	EFO	EFO_0001182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	GFP	P-GSE67348-2	ArrayExpress	P-GSE67348-3	ArrayExpress	P-GSE67348-4	ArrayExpress	GSM1645159 extract 1	total RNA	P-GSE67348-5	ArrayExpress	GSM1645159 LE 1	Biotin	P-GSE67348-6	ArrayExpress	GSM1645159	A-AFFY-44	ArrayExpress	array assay	P-GSE67348-7	ArrayExpress	GSM1645159_3_GFPsiRNA.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-67348/E-GEOD-67348.raw.1.zip	P-GSE67348-1	ArrayExpress	GSM1645159_sample_table.txt norm	GSM1645159_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-67348/E-GEOD-67348.processed.1.zip	simultaneous knockdown of TET1, TET2 and TET3	  	        
GSM1645158 1	Gene expression data from GFP#2 clone, 96 h after simultaneous siRNA-mediated knockdown of TET1, TET2, TET3 total RNA (>200 nt)	Flp-In??? T-REx??? 293	2_GFPsiRNA	HEK293	EFO	EFO_0001182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	GFP	P-GSE67348-2	ArrayExpress	P-GSE67348-3	ArrayExpress	P-GSE67348-4	ArrayExpress	GSM1645158 extract 1	total RNA	P-GSE67348-5	ArrayExpress	GSM1645158 LE 1	Biotin	P-GSE67348-6	ArrayExpress	GSM1645158	A-AFFY-44	ArrayExpress	array assay	P-GSE67348-7	ArrayExpress	GSM1645158_2_GFPsiRNA.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-67348/E-GEOD-67348.raw.1.zip	P-GSE67348-1	ArrayExpress	GSM1645158_sample_table.txt norm	GSM1645158_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-67348/E-GEOD-67348.processed.1.zip	simultaneous knockdown of TET1, TET2 and TET3	  	        
GSM1645157 1	Gene expression data from GFP#1 clone, 96 h after simultaneous siRNA-mediated knockdown of TET1, TET2, TET3 total RNA (>200 nt)	Flp-In??? T-REx??? 293	1_GFPsiRNA	HEK293	EFO	EFO_0001182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	GFP	P-GSE67348-2	ArrayExpress	P-GSE67348-3	ArrayExpress	P-GSE67348-4	ArrayExpress	GSM1645157 extract 1	total RNA	P-GSE67348-5	ArrayExpress	GSM1645157 LE 1	Biotin	P-GSE67348-6	ArrayExpress	GSM1645157	A-AFFY-44	ArrayExpress	array assay	P-GSE67348-7	ArrayExpress	GSM1645157_1_GFPsiRNA.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-67348/E-GEOD-67348.raw.1.zip	P-GSE67348-1	ArrayExpress	GSM1645157_sample_table.txt norm	GSM1645157_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-67348/E-GEOD-67348.processed.1.zip	simultaneous knockdown of TET1, TET2 and TET3