Source Name	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell types]	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [passage]	Characteristics [strain]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [genotype]
GSM1557616 1	2i ground state embryonic stem cells	iPKO 4	ESCs derived from E3.5 mouse blastocysts	iPKO	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	<20	C57BL/6	EFO	EFO_0004472	P-GSE63800-1	ArrayExpress	P-GSE63800-2	ArrayExpress	P-GSE63800-3	ArrayExpress	GSM1557616 extract 1	Illumina HiSeq 2500	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1557616	SRX794166	Illumina HiSeq 2500 (Mus musculus)	sequencing assay	GSM1557616_iPKO_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63800/E-GEOD-63800.processed.1.zip	iPKO
GSM1557615 1	2i ground state embryonic stem cells	iPKO 3	ESCs derived from E3.5 mouse blastocysts	iPKO	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	<20	C57BL/6	EFO	EFO_0004472	P-GSE63800-1	ArrayExpress	P-GSE63800-2	ArrayExpress	P-GSE63800-3	ArrayExpress	GSM1557615 extract 1	Illumina HiSeq 2500	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1557615	SRX794165	Illumina HiSeq 2500 (Mus musculus)	sequencing assay	GSM1557615_iPKO_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63800/E-GEOD-63800.processed.1.zip	iPKO
GSM1557614 1	2i ground state embryonic stem cells	iPKO 2	ESCs derived from E3.5 mouse blastocysts	iPKO	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	<20	C57BL/6	EFO	EFO_0004472	P-GSE63800-1	ArrayExpress	P-GSE63800-2	ArrayExpress	P-GSE63800-3	ArrayExpress	GSM1557614 extract 1	Illumina HiSeq 2500	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1557614	SRX794163	Illumina HiSeq 2500 (Mus musculus)	sequencing assay	GSM1557614_iPKO_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63800/E-GEOD-63800.processed.1.zip	iPKO
GSM1557613 1	2i ground state embryonic stem cells	iPKO 1	ESCs derived from E3.5 mouse blastocysts	iPKO	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	<20	C57BL/6	EFO	EFO_0004472	P-GSE63800-1	ArrayExpress	P-GSE63800-2	ArrayExpress	P-GSE63800-3	ArrayExpress	GSM1557613 extract 1	Illumina HiSeq 2500	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1557613	SRX794161	Illumina HiSeq 2500 (Mus musculus)	sequencing assay	GSM1557613_iPKO_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63800/E-GEOD-63800.processed.1.zip	iPKO
GSM1557612 1	2i ground state embryonic stem cells	iPHet 4	ESCs derived from E3.5 mouse blastocysts	iPHet	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	<20	C57BL/6	EFO	EFO_0004472	P-GSE63800-1	ArrayExpress	P-GSE63800-2	ArrayExpress	P-GSE63800-3	ArrayExpress	GSM1557612 extract 1	Illumina HiSeq 2500	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1557612	SRX794160	Illumina HiSeq 2500 (Mus musculus)	sequencing assay	GSM1557612_iPHet_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63800/E-GEOD-63800.processed.1.zip	iPHet
GSM1557611 1	2i ground state embryonic stem cells	iPHet 3	ESCs derived from E3.5 mouse blastocysts	iPHet	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	<20	C57BL/6	EFO	EFO_0004472	P-GSE63800-1	ArrayExpress	P-GSE63800-2	ArrayExpress	P-GSE63800-3	ArrayExpress	GSM1557611 extract 1	Illumina HiSeq 2500	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1557611	SRX794158	Illumina HiSeq 2500 (Mus musculus)	sequencing assay	GSM1557611_iPHet_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63800/E-GEOD-63800.processed.1.zip	iPHet
GSM1557610 1	2i ground state embryonic stem cells	iPHet 2	ESCs derived from E3.5 mouse blastocysts	iPHet	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	<20	C57BL/6	EFO	EFO_0004472	P-GSE63800-1	ArrayExpress	P-GSE63800-2	ArrayExpress	P-GSE63800-3	ArrayExpress	GSM1557610 extract 1	Illumina HiSeq 2500	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1557610	SRX794157	Illumina HiSeq 2500 (Mus musculus)	sequencing assay	GSM1557610_iPHet_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63800/E-GEOD-63800.processed.1.zip	iPHet
GSM1557609 1	2i ground state embryonic stem cells	iPHet 1	ESCs derived from E3.5 mouse blastocysts	iPHet	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	<20	C57BL/6	EFO	EFO_0004472	P-GSE63800-1	ArrayExpress	P-GSE63800-2	ArrayExpress	P-GSE63800-3	ArrayExpress	GSM1557609 extract 1	Illumina HiSeq 2500	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1557609	SRX794154	Illumina HiSeq 2500 (Mus musculus)	sequencing assay	GSM1557609_iPHet_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63800/E-GEOD-63800.processed.1.zip	iPHet