Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell population]	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [cell population]	FactorValue [genotype]
GSM1548720 1	biological repilate to sample 4	mouse medullary thymic epithelial cells (mTECs)	Hipk2 ko mTEC CD80high rep2	mTECs CD80high	TEC-specific Hipk2 gene knockout	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE63432-2	ArrayExpress	GSM1548720 extract 1	total RNA	P-GSE63432-3	ArrayExpress	GSM1548720 LE 1	biotin	P-GSE63432-4	ArrayExpress	GSM1548720	A-GEOD-17543	ArrayExpress	array assay	P-GSE63432-5	ArrayExpress	GSM1548720_7183057046_B_Grn.idat	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.raw.1.zip	P-GSE63432-1	ArrayExpress	GSM1548720_sample_table.txt norm	GSM1548720_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.processed.1.zip	mTECs CD80high	TEC-specific Hipk2 gene knockout
GSM1548719 1	biological repilate to sample 3	mouse medullary thymic epithelial cells (mTECs)	Hipk2 ko mTEC CD80low rep2	mTECs CD80low	TEC-specific Hipk2 gene knockout	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE63432-2	ArrayExpress	GSM1548719 extract 1	total RNA	P-GSE63432-3	ArrayExpress	GSM1548719 LE 1	biotin	P-GSE63432-4	ArrayExpress	GSM1548719	A-GEOD-17543	ArrayExpress	array assay	P-GSE63432-5	ArrayExpress	GSM1548719_7183057020_F_Grn.idat	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.raw.1.zip	P-GSE63432-1	ArrayExpress	GSM1548719_sample_table.txt norm	GSM1548719_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.processed.1.zip	mTECs CD80low	TEC-specific Hipk2 gene knockout
GSM1548718 1	biological repilate to sample 2	mouse medullary thymic epithelial cells (mTECs)	Hipk2 wt mTEC CD80high rep2	mTECs CD80high	mating wildtype control	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE63432-2	ArrayExpress	GSM1548718 extract 1	total RNA	P-GSE63432-3	ArrayExpress	GSM1548718 LE 1	biotin	P-GSE63432-4	ArrayExpress	GSM1548718	A-GEOD-17543	ArrayExpress	array assay	P-GSE63432-5	ArrayExpress	GSM1548718_7183057046_A_Grn.idat	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.raw.1.zip	P-GSE63432-1	ArrayExpress	GSM1548718_sample_table.txt norm	GSM1548718_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.processed.1.zip	mTECs CD80high	mating wildtype control
GSM1548717 1	biological repilate to sample 1	mouse medullary thymic epithelial cells (mTECs)	Hipk2 wt mTEC CD80low  rep2	mTECs CD80low	mating wildtype control	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE63432-2	ArrayExpress	GSM1548717 extract 1	total RNA	P-GSE63432-3	ArrayExpress	GSM1548717 LE 1	biotin	P-GSE63432-4	ArrayExpress	GSM1548717	A-GEOD-17543	ArrayExpress	array assay	P-GSE63432-5	ArrayExpress	GSM1548717_7183057020_E_Grn.idat	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.raw.1.zip	P-GSE63432-1	ArrayExpress	GSM1548717_sample_table.txt norm	GSM1548717_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.processed.1.zip	mTECs CD80low	mating wildtype control
GSM1548716 1	biological repilate to sample 8	mouse medullary thymic epithelial cells (mTECs)	Hipk2 ko mTEC CD80high rep1	mTECs CD80high	TEC-specific Hipk2 gene knockout	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE63432-2	ArrayExpress	GSM1548716 extract 1	total RNA	P-GSE63432-3	ArrayExpress	GSM1548716 LE 1	biotin	P-GSE63432-4	ArrayExpress	GSM1548716	A-GEOD-17543	ArrayExpress	array assay	P-GSE63432-5	ArrayExpress	GSM1548716_7183057020_D_Grn.idat	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.raw.1.zip	P-GSE63432-1	ArrayExpress	GSM1548716_sample_table.txt norm	GSM1548716_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.processed.1.zip	mTECs CD80high	TEC-specific Hipk2 gene knockout
GSM1548715 1	biological repilate to sample 7	mouse medullary thymic epithelial cells (mTECs)	Hipk2 ko mTEC CD80low rep1	mTECs CD80low	TEC-specific Hipk2 gene knockout	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE63432-2	ArrayExpress	GSM1548715 extract 1	total RNA	P-GSE63432-3	ArrayExpress	GSM1548715 LE 1	biotin	P-GSE63432-4	ArrayExpress	GSM1548715	A-GEOD-17543	ArrayExpress	array assay	P-GSE63432-5	ArrayExpress	GSM1548715_7183057020_B_Grn.idat	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.raw.1.zip	P-GSE63432-1	ArrayExpress	GSM1548715_sample_table.txt norm	GSM1548715_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.processed.1.zip	mTECs CD80low	TEC-specific Hipk2 gene knockout
GSM1548714 1	biological repilate to sample 6	mouse medullary thymic epithelial cells (mTECs)	Hipk2 wt mTEC CD80high rep1	mTECs CD80high	mating wildtype control	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE63432-2	ArrayExpress	GSM1548714 extract 1	total RNA	P-GSE63432-3	ArrayExpress	GSM1548714 LE 1	biotin	P-GSE63432-4	ArrayExpress	GSM1548714	A-GEOD-17543	ArrayExpress	array assay	P-GSE63432-5	ArrayExpress	GSM1548714_7183057020_C_Grn.idat	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.raw.1.zip	P-GSE63432-1	ArrayExpress	GSM1548714_sample_table.txt norm	GSM1548714_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.processed.1.zip	mTECs CD80high	mating wildtype control
GSM1548713 1	biological repilate to sample 5	mouse medullary thymic epithelial cells (mTECs)	Hipk2 wt mTEC CD80low rep1	mTECs CD80low	mating wildtype control	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE63432-2	ArrayExpress	GSM1548713 extract 1	total RNA	P-GSE63432-3	ArrayExpress	GSM1548713 LE 1	biotin	P-GSE63432-4	ArrayExpress	GSM1548713	A-GEOD-17543	ArrayExpress	array assay	P-GSE63432-5	ArrayExpress	GSM1548713_7183057020_A_Grn.idat	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.raw.1.zip	P-GSE63432-1	ArrayExpress	GSM1548713_sample_table.txt norm	GSM1548713_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-63432/E-GEOD-63432.processed.1.zip	mTECs CD80low	mating wildtype control