Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell type]	Characteristics [lentivirus vector]	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [LENTIVIRUS VECTOR]	FactorValue [TREATMENT]
GSM1429363 1	Gene expression from E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with 20 nM RA for 2 days.	E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with 20 nM RA for 2 days, rep6	sh-SIRT1 RA 6	E14 mESCs	SIRT1 shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429363 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429363 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429363	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429363_US23502387_251486839288_S01_GE1-v5_95_Feb07_1_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429363_sample_table.txt norm	GSM1429363_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	SIRT1 shRNA	20 nM RA
GSM1429362 1	Gene expression from E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with 20 nM RA for 2 days.	E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with 20 nM RA for 2 days, rep5	sh-SIRT1 RA 5	E14 mESCs	SIRT1 shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429362 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429362 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429362	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429362_US23502387_251486839273_S01_GE1-v5_95_Feb07_1_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429362_sample_table.txt norm	GSM1429362_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	SIRT1 shRNA	20 nM RA
GSM1429361 1	Gene expression from E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with 20 nM RA for 2 days.	E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with 20 nM RA for 2 days, rep4	sh-SIRT1 RA 4	E14 mESCs	SIRT1 shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429361 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429361 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429361	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429361_US23502387_251486839272_S01_GE1-v5_95_Feb07_1_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429361_sample_table.txt norm	GSM1429361_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	SIRT1 shRNA	20 nM RA
GSM1429360 1	Gene expression from E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with 20 nM RA for 2 days.	E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with 20 nM RA for 2 days, rep3	sh-SIRT1 RA 3	E14 mESCs	SIRT1 shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429360 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429360 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429360	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429360_US23502387_251486839274_S01_GE1-v5_95_Feb07_1_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429360_sample_table.txt norm	GSM1429360_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	SIRT1 shRNA	20 nM RA
GSM1429359 1	Gene expression from E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with 20 nM RA for 2 days.	E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with 20 nM RA for 2 days, rep2	sh-SIRT1 RA 2	E14 mESCs	SIRT1 shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429359 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429359 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429359	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429359_US23502387_251486839274_S01_GE1-v5_95_Feb07_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429359_sample_table.txt norm	GSM1429359_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	SIRT1 shRNA	20 nM RA
GSM1429358 1	Gene expression from E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with 20 nM RA for 2 days.	E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with 20 nM RA for 2 days, rep1	sh-SIRT1 RA 1	E14 mESCs	SIRT1 shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429358 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429358 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429358	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429358_US23502387_251486839288_S01_GE1-v5_95_Feb07_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429358_sample_table.txt norm	GSM1429358_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	SIRT1 shRNA	20 nM RA
GSM1429357 1	Gene expression from E14 mESC stably expressing control shRNA in lentivirus vector, treated with 20 nM RA for 2 days.	E14 mESC stably expressing control shRNA in lentivirus vector, treated with 20 nM RA for 2 days, rep4	sh-Control RA 4	E14 mESCs	control shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429357 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429357 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429357	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429357_US23502387_251486839273_S01_GE1-v5_95_Feb07_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429357_sample_table.txt norm	GSM1429357_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	control shRNA	20 nM RA
GSM1429356 1	Gene expression from E14 mESC stably expressing control shRNA in lentivirus vector, treated with 20 nM RA for 2 days.	E14 mESC stably expressing control shRNA in lentivirus vector, treated with 20 nM RA for 2 days, rep3	sh-Control RA 3	E14 mESCs	control shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429356 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429356 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429356	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429356_US23502387_251486839272_S01_GE1-v5_95_Feb07_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429356_sample_table.txt norm	GSM1429356_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	control shRNA	20 nM RA
GSM1429355 1	Gene expression from E14 mESC stably expressing control shRNA in lentivirus vector, treated with 20 nM RA for 2 days.	E14 mESC stably expressing control shRNA in lentivirus vector, treated with 20 nM RA for 2 days, rep2	sh-Control RA 2	E14 mESCs	control shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429355 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429355 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429355	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429355_US23502387_251486839273_S01_GE1-v5_95_Feb07_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429355_sample_table.txt norm	GSM1429355_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	control shRNA	20 nM RA
GSM1429354 1	Gene expression from E14 mESC stably expressing control shRNA in lentivirus vector, treated with 20 nM RA for 2 days.	E14 mESC stably expressing control shRNA in lentivirus vector, treated with 20 nM RA for 2 days, rep1	sh-Control RA 1	E14 mESCs	control shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429354 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429354 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429354	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429354_US23502387_251486839288_S01_GE1-v5_95_Feb07_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429354_sample_table.txt norm	GSM1429354_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	control shRNA	20 nM RA
GSM1429353 1	Gene expression from E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with vehicle ethanol for 2 days.	E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with vehicle ethanol for 2 days, rep3	sh-SIRT1 ethanol 3	E14 mESCs	SIRT1 shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429353 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429353 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429353	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429353_US23502387_251486839274_S01_GE1-v5_95_Feb07_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429353_sample_table.txt norm	GSM1429353_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	SIRT1 shRNA	vehicle ethanol
GSM1429352 1	Gene expression from E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with vehicle ethanol for 2 days.	E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with vehicle ethanol for 2 days, rep2	sh-SIRT1 ethanol 2	E14 mESCs	SIRT1 shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429352 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429352 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429352	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429352_US23502387_251486839272_S01_GE1-v5_95_Feb07_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429352_sample_table.txt norm	GSM1429352_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	SIRT1 shRNA	vehicle ethanol
GSM1429351 1	Gene expression from E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with vehicle ethanol for 2 days.	E14 mESC stably expressing SIRT1 shRNA in lentivirus vector, treated with vehicle ethanol for 2 days, rep1	sh-SIRT1 ethanol 1	E14 mESCs	SIRT1 shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429351 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429351 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429351	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429351_US23502387_251486839273_S01_GE1-v5_95_Feb07_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429351_sample_table.txt norm	GSM1429351_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	SIRT1 shRNA	vehicle ethanol
GSM1429350 1	Gene expression from E14 mESC stably expressing control shRNA in lentivirus vector, treated with vehicle ethanol for 2 days.	E14 mESC stably expressing control shRNA in lentivirus vector, treated with vehicle ethanol for 2 days, rep3	sh-Control ethanol 3	E14 mESCs	control shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429350 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429350 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429350	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429350_US23502387_251486839288_S01_GE1-v5_95_Feb07_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429350_sample_table.txt norm	GSM1429350_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	control shRNA	vehicle ethanol
GSM1429349 1	Gene expression from E14 mESC stably expressing control shRNA in lentivirus vector, treated with vehicle ethanol for 2 days.	E14 mESC stably expressing control shRNA in lentivirus vector, treated with vehicle ethanol for 2 days, rep2	sh-Control ethanol 2	E14 mESCs	control shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429349 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429349 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429349	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429349_US23502387_251486839274_S01_GE1-v5_95_Feb07_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429349_sample_table.txt norm	GSM1429349_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	control shRNA	vehicle ethanol
GSM1429348 1	Gene expression from E14 mESC stably expressing control shRNA in lentivirus vector, treated with vehicle ethanol for 2 days.	E14 mESC stably expressing control shRNA in lentivirus vector, treated with vehicle ethanol for 2 days, rep1	sh-Control ethanol 1	E14 mESCs	control shRNA	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE59140-2	ArrayExpress	P-GSE59140-3	ArrayExpress	P-GSE59140-4	ArrayExpress	GSM1429348 extract 1	total RNA	P-GSE59140-5	ArrayExpress	GSM1429348 LE 1	Cy3	P-GSE59140-6	ArrayExpress	GSM1429348	A-AGIL-28	ArrayExpress	array assay	P-GSE59140-7	ArrayExpress	GSM1429348_US23502387_251486839272_S01_GE1-v5_95_Feb07_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.raw.1.zip	P-GSE59140-1	ArrayExpress	GSM1429348_sample_table.txt norm	GSM1429348_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-59140/E-GEOD-59140.processed.1.zip	control shRNA	vehicle ethanol