Source Name Comment [Sample_source_name] Comment [Sample_title] Characteristics [Sex] Term Source REF Term Accession Number Characteristics [dna extraction method] Characteristics [fgfr3 mutation] Characteristics [hoglund lab uid] Characteristics [ip-batch] Term Source REF Term Accession Number Characteristics [lauss 2012 epitype] Characteristics [nimblegen slide id] Characteristics [organism] Term Source REF Term Accession Number Characteristics [organism part] Term Source REF Term Accession Number Characteristics [pik3ca mutation] Characteristics [sjodahl 2012 molecular subtype] Characteristics [sonication batch] Characteristics [tp53 mutation] Characteristics [wga reamplification batch] Characteristics [who 1999 grade] Characteristics [who1999 stage simple] Term Source REF Term Accession Number Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [Sex] Term Source REF Term Accession Number FactorValue [dna extraction method] FactorValue [fgfr3 mutation] FactorValue [hoglund lab uid] FactorValue [ip-batch] Term Source REF Term Accession Number FactorValue [lauss 2012 epitype] FactorValue [nimblegen slide id] FactorValue [organism part] Term Source REF Term Accession Number FactorValue [pik3ca mutation] FactorValue [sjodahl 2012 molecular subtype] FactorValue [sonication batch] FactorValue [tp53 mutation] FactorValue [wga reamplification batch] FactorValue [who 1999 grade] FactorValue [who1999 stage simple] Term Source REF Term Accession Number GSM1405261 2 MeDIP DNA Bladder tumor UC_0611_1 female EFO EFO_0001265 AllPrep 1 UC_0611_1 M02 A2 521890 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S03 1 4 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405261 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405261 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405261 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405261_sample_table.txt norm GSM1405261_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip female EFO EFO_0001265 AllPrep 1 UC_0611_1 M02 A2 521890 bladder tumor EFO EFO_0000294 0 MS1a S03 1 4 2 T1 GSM1405261 1 Input DNA Bladder tumor UC_0611_1 female EFO EFO_0001265 AllPrep 1 UC_0611_1 M02 A2 521890 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S03 1 4 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405261 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405261 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405261 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405261_sample_table.txt norm GSM1405261_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip female EFO EFO_0001265 AllPrep 1 UC_0611_1 M02 A2 521890 bladder tumor EFO EFO_0000294 0 MS1a S03 1 4 2 T1 GSM1405260 1 Input DNA Bladder tumor UC_0438_1 male EFO EFO_0001266 AllPrep 0 UC_0438_1 M03 A1 521887 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S03 0 3 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405260 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405260 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405260 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405260_sample_table.txt norm GSM1405260_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0438_1 M03 A1 521887 bladder tumor EFO EFO_0000294 0 MS1b S03 0 3 1 Ta GSM1405260 2 MeDIP DNA Bladder tumor UC_0438_1 male EFO EFO_0001266 AllPrep 0 UC_0438_1 M03 A1 521887 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S03 0 3 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405260 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405260 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405260 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405260_sample_table.txt norm GSM1405260_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0438_1 M03 A1 521887 bladder tumor EFO EFO_0000294 0 MS1b S03 0 3 1 Ta GSM1405259 2 MeDIP DNA Bladder tumor UC_0495_1 male EFO EFO_0001266 AllPrep 1 UC_0495_1 M07 B 521065 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1b S08 0 4 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405259 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405259 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405259 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405259_sample_table.txt norm GSM1405259_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 1 UC_0495_1 M07 B 521065 bladder tumor EFO EFO_0000294 1 MS1b S08 0 4 1 Ta GSM1405259 1 Input DNA Bladder tumor UC_0495_1 male EFO EFO_0001266 AllPrep 1 UC_0495_1 M07 B 521065 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1b S08 0 4 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405259 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405259 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405259 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405259_sample_table.txt norm GSM1405259_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 1 UC_0495_1 M07 B 521065 bladder tumor EFO EFO_0000294 1 MS1b S08 0 4 1 Ta GSM1405258 2 MeDIP DNA Bladder tumor UC_0753_1 male EFO EFO_0001266 AllPrep 0 UC_0753_1 M02 0 521065 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S03 1 5 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405258 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405258 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405258 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405258_sample_table.txt norm GSM1405258_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0753_1 M02 0 521065 bladder tumor EFO EFO_0000294 0 MS2a.1 S03 1 5 2 T1 GSM1405258 1 Input DNA Bladder tumor UC_0753_1 male EFO EFO_0001266 AllPrep 0 UC_0753_1 M02 0 521065 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S03 1 5 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405258 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405258 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405258 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405258_sample_table.txt norm GSM1405258_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0753_1 M02 0 521065 bladder tumor EFO EFO_0000294 0 MS2a.1 S03 1 5 2 T1 GSM1405257 1 Input DNA Bladder tumor UC_0779_1 male EFO EFO_0001266 AllPrep 0 UC_0779_1 M02 0 520958 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2b.2.2 S02 0 4 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405257 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405257 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405257 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405257_sample_table.txt norm GSM1405257_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0779_1 M02 0 520958 bladder tumor EFO EFO_0000294 1 MS2b.2.2 S02 0 4 3 T2 GSM1405257 2 MeDIP DNA Bladder tumor UC_0779_1 male EFO EFO_0001266 AllPrep 0 UC_0779_1 M02 0 520958 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2b.2.2 S02 0 4 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405257 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405257 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405257 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405257_sample_table.txt norm GSM1405257_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0779_1 M02 0 520958 bladder tumor EFO EFO_0000294 1 MS2b.2.2 S02 0 4 3 T2 GSM1405256 2 MeDIP DNA Bladder tumor UC_0257_1 male EFO EFO_0001266 DNeasy 0 UC_0257_1 M09 A2 520958 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1a S14 0 4 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405256 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405256 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405256 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405256_sample_table.txt norm GSM1405256_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 DNeasy 0 UC_0257_1 M09 A2 520958 bladder tumor EFO EFO_0000294 1 MS1a S14 0 4 2 Ta GSM1405256 1 Input DNA Bladder tumor UC_0257_1 male EFO EFO_0001266 DNeasy 0 UC_0257_1 M09 A2 520958 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1a S14 0 4 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405256 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405256 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405256 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405256_sample_table.txt norm GSM1405256_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 DNeasy 0 UC_0257_1 M09 A2 520958 bladder tumor EFO EFO_0000294 1 MS1a S14 0 4 2 Ta GSM1405255 2 MeDIP DNA Bladder tumor UC_0548_1 male EFO EFO_0001266 AllPrep 1 UC_0548_1 M14 EFO EFO_0003056 0 520958 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S20 0 5 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405255 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405255 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405255 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405255_sample_table.txt norm GSM1405255_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 1 UC_0548_1 M14 EFO EFO_0003056 0 520958 bladder tumor EFO EFO_0000294 0 MS1b S20 0 5 1 Ta GSM1405255 1 Input DNA Bladder tumor UC_0548_1 male EFO EFO_0001266 AllPrep 1 UC_0548_1 M14 EFO EFO_0003056 0 520958 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S20 0 5 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405255 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405255 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405255 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405255_sample_table.txt norm GSM1405255_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 1 UC_0548_1 M14 EFO EFO_0003056 0 520958 bladder tumor EFO EFO_0000294 0 MS1b S20 0 5 1 Ta GSM1405254 2 MeDIP DNA Bladder tumor UC_0608_1 male EFO EFO_0001266 AllPrep 0 UC_0608_1 M04 0 521170 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S08 1 4 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405254 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405254 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405254 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405254_sample_table.txt norm GSM1405254_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0608_1 M04 0 521170 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S08 1 4 3 T1 GSM1405254 1 Input DNA Bladder tumor UC_0608_1 male EFO EFO_0001266 AllPrep 0 UC_0608_1 M04 0 521170 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S08 1 4 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405254 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405254 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405254 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405254_sample_table.txt norm GSM1405254_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0608_1 M04 0 521170 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S08 1 4 3 T1 GSM1405253 1 Input DNA Bladder tumor UC_0591_1 male EFO EFO_0001266 AllPrep 0 UC_0591_1 M06 0 521170 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S07 0 5 3 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405253 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405253 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405253 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405253_sample_table.txt norm GSM1405253_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0591_1 M06 0 521170 bladder tumor EFO EFO_0000294 0 MS2a.1 S07 0 5 3 Ta GSM1405253 2 MeDIP DNA Bladder tumor UC_0591_1 male EFO EFO_0001266 AllPrep 0 UC_0591_1 M06 0 521170 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S07 0 5 3 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405253 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405253 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405253 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405253_sample_table.txt norm GSM1405253_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0591_1 M06 0 521170 bladder tumor EFO EFO_0000294 0 MS2a.1 S07 0 5 3 Ta GSM1405252 1 Input DNA Bladder tumor UC_0193_1 male EFO EFO_0001266 DNeasy 1 UC_0193_1 M03 A2 521170 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S03 1 3 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405252 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405252 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405252 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405252_sample_table.txt norm GSM1405252_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 DNeasy 1 UC_0193_1 M03 A2 521170 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S03 1 3 3 T2 GSM1405252 2 MeDIP DNA Bladder tumor UC_0193_1 male EFO EFO_0001266 DNeasy 1 UC_0193_1 M03 A2 521170 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S03 1 3 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405252 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405252 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405252 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405252_sample_table.txt norm GSM1405252_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 DNeasy 1 UC_0193_1 M03 A2 521170 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S03 1 3 3 T2 GSM1405251 2 MeDIP DNA Bladder tumor UC_0237_1 male EFO EFO_0001266 DNeasy 0 UC_0237_1 M07 0 521176 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S11 1 4 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405251 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405251 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405251 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405251_sample_table.txt norm GSM1405251_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 DNeasy 0 UC_0237_1 M07 0 521176 bladder tumor EFO EFO_0000294 0 MS2a.1 S11 1 4 3 T1 GSM1405251 1 Input DNA Bladder tumor UC_0237_1 male EFO EFO_0001266 DNeasy 0 UC_0237_1 M07 0 521176 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S11 1 4 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405251 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405251 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405251 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405251_sample_table.txt norm GSM1405251_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 DNeasy 0 UC_0237_1 M07 0 521176 bladder tumor EFO EFO_0000294 0 MS2a.1 S11 1 4 3 T1 GSM1405250 2 MeDIP DNA Bladder tumor UC_0554_1 female EFO EFO_0001265 AllPrep 1 UC_0554_1 M08 0 521176 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2b.2.1 S11 0 3 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405250 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405250 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405250 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405250_sample_table.txt norm GSM1405250_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip female EFO EFO_0001265 AllPrep 1 UC_0554_1 M08 0 521176 bladder tumor EFO EFO_0000294 1 MS2b.2.1 S11 0 3 2 T1 GSM1405250 1 Input DNA Bladder tumor UC_0554_1 female EFO EFO_0001265 AllPrep 1 UC_0554_1 M08 0 521176 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2b.2.1 S11 0 3 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405250 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405250 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405250 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405250_sample_table.txt norm GSM1405250_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip female EFO EFO_0001265 AllPrep 1 UC_0554_1 M08 0 521176 bladder tumor EFO EFO_0000294 1 MS2b.2.1 S11 0 3 2 T1 GSM1405249 2 MeDIP DNA Bladder tumor UC_0726_1 female EFO EFO_0001265 AllPrep 0 UC_0726_1 M01 A1 521176 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S01 0 4 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405249 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405249 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405249 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405249_sample_table.txt norm GSM1405249_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip female EFO EFO_0001265 AllPrep 0 UC_0726_1 M01 A1 521176 bladder tumor EFO EFO_0000294 0 MS1a S01 0 4 2 Ta GSM1405249 1 Input DNA Bladder tumor UC_0726_1 female EFO EFO_0001265 AllPrep 0 UC_0726_1 M01 A1 521176 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S01 0 4 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405249 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405249 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405249 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405249_sample_table.txt norm GSM1405249_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip female EFO EFO_0001265 AllPrep 0 UC_0726_1 M01 A1 521176 bladder tumor EFO EFO_0000294 0 MS1a S01 0 4 2 Ta GSM1405248 2 MeDIP DNA Bladder tumor UC_0780_1 male EFO EFO_0001266 AllPrep 0 UC_0780_1 M14 EFO EFO_0003056 0 520845 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S21 0 5 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405248 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405248 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405248 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405248_sample_table.txt norm GSM1405248_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0780_1 M14 EFO EFO_0003056 0 520845 bladder tumor EFO EFO_0000294 0 MS1a S21 0 5 1 Ta GSM1405248 1 Input DNA Bladder tumor UC_0780_1 male EFO EFO_0001266 AllPrep 0 UC_0780_1 M14 EFO EFO_0003056 0 520845 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S21 0 5 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405248 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405248 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405248 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405248_sample_table.txt norm GSM1405248_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0780_1 M14 EFO EFO_0003056 0 520845 bladder tumor EFO EFO_0000294 0 MS1a S21 0 5 1 Ta GSM1405247 2 MeDIP DNA Bladder tumor UC_0614_1 male EFO EFO_0001266 AllPrep 0 UC_0614_1 M10 B 520845 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S14 1 3 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405247 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405247 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405247 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405247_sample_table.txt norm GSM1405247_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0614_1 M10 B 520845 bladder tumor EFO EFO_0000294 0 MS2a.1 S14 1 3 3 T1 GSM1405247 1 Input DNA Bladder tumor UC_0614_1 male EFO EFO_0001266 AllPrep 0 UC_0614_1 M10 B 520845 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S14 1 3 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405247 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405247 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405247 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405247_sample_table.txt norm GSM1405247_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0614_1 M10 B 520845 bladder tumor EFO EFO_0000294 0 MS2a.1 S14 1 3 3 T1 GSM1405246 2 MeDIP DNA Bladder tumor UC_0106_2 female EFO EFO_0001265 DNeasy 0 UC_0106_2 M06 0 520845 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S9 0 4 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405246 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405246 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405246 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405246_sample_table.txt norm GSM1405246_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip female EFO EFO_0001265 DNeasy 0 UC_0106_2 M06 0 520845 bladder tumor EFO EFO_0000294 0 MS1a S9 0 4 1 Ta GSM1405246 1 Input DNA Bladder tumor UC_0106_2 female EFO EFO_0001265 DNeasy 0 UC_0106_2 M06 0 520845 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S9 0 4 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405246 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405246 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405246 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405246_sample_table.txt norm GSM1405246_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip female EFO EFO_0001265 DNeasy 0 UC_0106_2 M06 0 520845 bladder tumor EFO EFO_0000294 0 MS1a S9 0 4 1 Ta GSM1405245 2 MeDIP DNA Bladder tumor UC_0238_1 male EFO EFO_0001266 DNeasy 0 UC_0238_1 M15 0 520863 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S21 0 5 3 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405245 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405245 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405245 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405245_sample_table.txt norm GSM1405245_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 DNeasy 0 UC_0238_1 M15 0 520863 bladder tumor EFO EFO_0000294 0 MS1b S21 0 5 3 Ta GSM1405245 1 Input DNA Bladder tumor UC_0238_1 male EFO EFO_0001266 DNeasy 0 UC_0238_1 M15 0 520863 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S21 0 5 3 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405245 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405245 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405245 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405245_sample_table.txt norm GSM1405245_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 DNeasy 0 UC_0238_1 M15 0 520863 bladder tumor EFO EFO_0000294 0 MS1b S21 0 5 3 Ta GSM1405244 2 MeDIP DNA Bladder tumor UC_0705_1 female EFO EFO_0001265 AllPrep 0 UC_0705_1 M08 0 520863 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S11 0 3 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405244 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405244 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405244 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405244_sample_table.txt norm GSM1405244_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip female EFO EFO_0001265 AllPrep 0 UC_0705_1 M08 0 520863 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S11 0 3 2 Ta GSM1405244 1 Input DNA Bladder tumor UC_0705_1 female EFO EFO_0001265 AllPrep 0 UC_0705_1 M08 0 520863 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S11 0 3 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405244 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405244 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405244 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405244_sample_table.txt norm GSM1405244_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip female EFO EFO_0001265 AllPrep 0 UC_0705_1 M08 0 520863 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S11 0 3 2 Ta GSM1405243 2 MeDIP DNA Bladder tumor UC_0770_1 male EFO EFO_0001266 AllPrep 0 UC_0770_1 M10 0 520863 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S16 1 4 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405243 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405243 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405243 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405243_sample_table.txt norm GSM1405243_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0770_1 M10 0 520863 bladder tumor EFO EFO_0000294 0 MS2a.1 S16 1 4 3 T1 GSM1405243 1 Input DNA Bladder tumor UC_0770_1 male EFO EFO_0001266 AllPrep 0 UC_0770_1 M10 0 520863 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S16 1 4 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405243 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405243 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405243 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405243_sample_table.txt norm GSM1405243_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 AllPrep 0 UC_0770_1 M10 0 520863 bladder tumor EFO EFO_0000294 0 MS2a.1 S16 1 4 3 T1 GSM1405242 2 MeDIP DNA Bladder tumor UC_0584_1 female EFO EFO_0001265 AllPrep 1 UC_0584_1 M04 0 520842 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1a S06 0 5 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405242 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405242 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405242 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405242_sample_table.txt norm GSM1405242_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip female EFO EFO_0001265 AllPrep 1 UC_0584_1 M04 0 520842 bladder tumor EFO EFO_0000294 1 MS1a S06 0 5 1 Ta GSM1405242 1 Input DNA Bladder tumor UC_0584_1 female EFO EFO_0001265 AllPrep 1 UC_0584_1 M04 0 520842 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1a S06 0 5 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405242 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405242 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405242 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405242_sample_table.txt norm GSM1405242_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip female EFO EFO_0001265 AllPrep 1 UC_0584_1 M04 0 520842 bladder tumor EFO EFO_0000294 1 MS1a S06 0 5 1 Ta GSM1405241 1 Input DNA Bladder tumor UC_0778_1 female EFO EFO_0001265 AllPrep 0 UC_0778_1 M11 0 520842 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S14 0 5 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405241 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405241 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405241 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405241_sample_table.txt norm GSM1405241_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip female EFO EFO_0001265 AllPrep 0 UC_0778_1 M11 0 520842 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S14 0 5 3 T2 GSM1405241 2 MeDIP DNA Bladder tumor UC_0778_1 female EFO EFO_0001265 AllPrep 0 UC_0778_1 M11 0 520842 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S14 0 5 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405241 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405241 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405241 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405241_sample_table.txt norm GSM1405241_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip female EFO EFO_0001265 AllPrep 0 UC_0778_1 M11 0 520842 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S14 0 5 3 T2 GSM1405240 2 MeDIP DNA Bladder tumor UC_0589_1 male EFO EFO_0001266 DNeasy 0 UC_0589_1 M04 C2 520842 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S06 1 4 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405240 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405240 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405240 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405240_sample_table.txt norm GSM1405240_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 DNeasy 0 UC_0589_1 M04 C2 520842 bladder tumor EFO EFO_0000294 0 MS2a.2 S06 1 4 3 T1 GSM1405240 1 Input DNA Bladder tumor UC_0589_1 male EFO EFO_0001266 DNeasy 0 UC_0589_1 M04 C2 520842 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S06 1 4 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405240 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405240 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405240 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405240_sample_table.txt norm GSM1405240_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.1.zip male EFO EFO_0001266 DNeasy 0 UC_0589_1 M04 C2 520842 bladder tumor EFO EFO_0000294 0 MS2a.2 S06 1 4 3 T1 GSM1405239 1 Input DNA Normal Urothelium N_036_Urothel male EFO EFO_0001266 AllPrep 0 N_036_Urothel M07 Ctrl 520841 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Normal Urothelium 0 Ctrl S11 0 3 N N P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405239 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405239 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405239 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405239_sample_table.txt norm GSM1405239_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 N_036_Urothel M07 Ctrl 520841 Normal Urothelium 0 Ctrl S11 0 3 N N GSM1405239 2 MeDIP DNA Normal Urothelium N_036_Urothel male EFO EFO_0001266 AllPrep 0 N_036_Urothel M07 Ctrl 520841 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Normal Urothelium 0 Ctrl S11 0 3 N N P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405239 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405239 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405239 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405239_sample_table.txt norm GSM1405239_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 N_036_Urothel M07 Ctrl 520841 Normal Urothelium 0 Ctrl S11 0 3 N N GSM1405238 1 Input DNA Bladder tumor UC_0607_1 male EFO EFO_0001266 AllPrep 0 UC_0607_1 M09 0 520841 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S10 1 4 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405238 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405238 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405238 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405238_sample_table.txt norm GSM1405238_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 UC_0607_1 M09 0 520841 bladder tumor EFO EFO_0000294 0 MS2a.2 S10 1 4 3 T1 GSM1405238 2 MeDIP DNA Bladder tumor UC_0607_1 male EFO EFO_0001266 AllPrep 0 UC_0607_1 M09 0 520841 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S10 1 4 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405238 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405238 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405238 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405238_sample_table.txt norm GSM1405238_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 UC_0607_1 M09 0 520841 bladder tumor EFO EFO_0000294 0 MS2a.2 S10 1 4 3 T1 GSM1405237 1 Input DNA Bladder tumor UC_0577_1 male EFO EFO_0001266 AllPrep 0 UC_0577_1 M02 C2 520841 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S03 0 4 3 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405237 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405237 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405237 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405237_sample_table.txt norm GSM1405237_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 UC_0577_1 M02 C2 520841 bladder tumor EFO EFO_0000294 0 MS2a.1 S03 0 4 3 Ta GSM1405237 2 MeDIP DNA Bladder tumor UC_0577_1 male EFO EFO_0001266 AllPrep 0 UC_0577_1 M02 C2 520841 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S03 0 4 3 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405237 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405237 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405237 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405237_sample_table.txt norm GSM1405237_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 UC_0577_1 M02 C2 520841 bladder tumor EFO EFO_0000294 0 MS2a.1 S03 0 4 3 Ta GSM1405236 2 MeDIP DNA Bladder tumor UC_0574_1 male EFO EFO_0001266 AllPrep 0 UC_0574_1 M11 0 520840 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2a.2 S15 0 3 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405236 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405236 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405236 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405236_sample_table.txt norm GSM1405236_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 UC_0574_1 M11 0 520840 bladder tumor EFO EFO_0000294 1 MS2a.2 S15 0 3 2 T1 GSM1405236 1 Input DNA Bladder tumor UC_0574_1 male EFO EFO_0001266 AllPrep 0 UC_0574_1 M11 0 520840 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2a.2 S15 0 3 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405236 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405236 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405236 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405236_sample_table.txt norm GSM1405236_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 UC_0574_1 M11 0 520840 bladder tumor EFO EFO_0000294 1 MS2a.2 S15 0 3 2 T1 GSM1405235 2 MeDIP DNA Bladder tumor UC_0518_1 male EFO EFO_0001266 DNeasy 0 UC_0518_1 M05 C2 520840 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S06 1 4 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405235 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405235 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405235 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405235_sample_table.txt norm GSM1405235_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 DNeasy 0 UC_0518_1 M05 C2 520840 bladder tumor EFO EFO_0000294 0 MS2a.2 S06 1 4 3 T1 GSM1405235 1 Input DNA Bladder tumor UC_0518_1 male EFO EFO_0001266 DNeasy 0 UC_0518_1 M05 C2 520840 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S06 1 4 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405235 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405235 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405235 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405235_sample_table.txt norm GSM1405235_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 DNeasy 0 UC_0518_1 M05 C2 520840 bladder tumor EFO EFO_0000294 0 MS2a.2 S06 1 4 3 T1 GSM1405234 2 MeDIP DNA Bladder tumor UC_0762_1 male EFO EFO_0001266 AllPrep 1 UC_0762_1 M05 0 520840 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S08 1 3 2 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405234 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405234 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405234 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405234_sample_table.txt norm GSM1405234_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 1 UC_0762_1 M05 0 520840 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S08 1 3 2 T2 GSM1405234 1 Input DNA Bladder tumor UC_0762_1 male EFO EFO_0001266 AllPrep 1 UC_0762_1 M05 0 520840 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S08 1 3 2 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405234 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405234 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405234 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405234_sample_table.txt norm GSM1405234_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 1 UC_0762_1 M05 0 520840 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S08 1 3 2 T2 GSM1405233 2 MeDIP DNA Bladder tumor UC_0536_1 male EFO EFO_0001266 AllPrep 1 UC_0536_1 M12 B 520848 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S18 0 4 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405233 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405233 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405233 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405233_sample_table.txt norm GSM1405233_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 1 UC_0536_1 M12 B 520848 bladder tumor EFO EFO_0000294 0 MS1b S18 0 4 2 T1 GSM1405233 1 Input DNA Bladder tumor UC_0536_1 male EFO EFO_0001266 AllPrep 1 UC_0536_1 M12 B 520848 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S18 0 4 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405233 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405233 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405233 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405233_sample_table.txt norm GSM1405233_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 1 UC_0536_1 M12 B 520848 bladder tumor EFO EFO_0000294 0 MS1b S18 0 4 2 T1 GSM1405232 2 MeDIP DNA Bladder tumor UC_0721_1 female EFO EFO_0001265 AllPrep 0 UC_0721_1 M02 0 520848 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S03 0 4 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405232 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405232 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405232 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405232_sample_table.txt norm GSM1405232_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip female EFO EFO_0001265 AllPrep 0 UC_0721_1 M02 0 520848 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S03 0 4 2 Ta GSM1405232 1 Input DNA Bladder tumor UC_0721_1 female EFO EFO_0001265 AllPrep 0 UC_0721_1 M02 0 520848 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S03 0 4 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405232 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405232 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405232 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405232_sample_table.txt norm GSM1405232_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip female EFO EFO_0001265 AllPrep 0 UC_0721_1 M02 0 520848 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S03 0 4 2 Ta GSM1405231 1 Input DNA Bladder tumor UC_0113_1 female EFO EFO_0001265 DNeasy 0 UC_0113_1 M04 0 520848 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2b.2.2 S07 1 3 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405231 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405231 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405231 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405231_sample_table.txt norm GSM1405231_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip female EFO EFO_0001265 DNeasy 0 UC_0113_1 M04 0 520848 bladder tumor EFO EFO_0000294 1 MS2b.2.2 S07 1 3 3 T2 GSM1405231 2 MeDIP DNA Bladder tumor UC_0113_1 female EFO EFO_0001265 DNeasy 0 UC_0113_1 M04 0 520848 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2b.2.2 S07 1 3 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405231 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405231 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405231 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405231_sample_table.txt norm GSM1405231_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip female EFO EFO_0001265 DNeasy 0 UC_0113_1 M04 0 520848 bladder tumor EFO EFO_0000294 1 MS2b.2.2 S07 1 3 3 T2 GSM1405230 1 Input DNA Bladder tumor UC_0210_2 male EFO EFO_0001266 DNeasy 0 UC_0210_2 M03 0 520846 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S04 0 4 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405230 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405230 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405230 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405230_sample_table.txt norm GSM1405230_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 DNeasy 0 UC_0210_2 M03 0 520846 bladder tumor EFO EFO_0000294 0 MS1b S04 0 4 1 Ta GSM1405230 2 MeDIP DNA Bladder tumor UC_0210_2 male EFO EFO_0001266 DNeasy 0 UC_0210_2 M03 0 520846 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S04 0 4 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405230 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405230 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405230 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405230_sample_table.txt norm GSM1405230_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 DNeasy 0 UC_0210_2 M03 0 520846 bladder tumor EFO EFO_0000294 0 MS1b S04 0 4 1 Ta GSM1405229 1 Input DNA Bladder tumor UC_0757_1 female EFO EFO_0001265 AllPrep 0 UC_0757_1 M01 0 520846 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S01 1 5 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405229 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405229 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405229 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405229_sample_table.txt norm GSM1405229_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip female EFO EFO_0001265 AllPrep 0 UC_0757_1 M01 0 520846 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S01 1 5 3 T2 GSM1405229 2 MeDIP DNA Bladder tumor UC_0757_1 female EFO EFO_0001265 AllPrep 0 UC_0757_1 M01 0 520846 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S01 1 5 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405229 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405229 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405229 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405229_sample_table.txt norm GSM1405229_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip female EFO EFO_0001265 AllPrep 0 UC_0757_1 M01 0 520846 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S01 1 5 3 T2 GSM1405228 2 MeDIP DNA Bladder tumor UC_0094_1 male EFO EFO_0001266 DNeasy 0 UC_0094_1 M06 0 520846 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S12 0 5 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405228 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405228 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405228 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405228_sample_table.txt norm GSM1405228_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 DNeasy 0 UC_0094_1 M06 0 520846 bladder tumor EFO EFO_0000294 0 MS2a.2 S12 0 5 3 T2 GSM1405228 1 Input DNA Bladder tumor UC_0094_1 male EFO EFO_0001266 DNeasy 0 UC_0094_1 M06 0 520846 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S12 0 5 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405228 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405228 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405228 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405228_sample_table.txt norm GSM1405228_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 DNeasy 0 UC_0094_1 M06 0 520846 bladder tumor EFO EFO_0000294 0 MS2a.2 S12 0 5 3 T2 GSM1405227 1 Input DNA Bladder tumor UC_0493_1 male EFO EFO_0001266 AllPrep 1 UC_0493_1 M13 0 520861 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S20 0 5 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405227 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405227 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405227 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405227_sample_table.txt norm GSM1405227_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 1 UC_0493_1 M13 0 520861 bladder tumor EFO EFO_0000294 0 MS1b S20 0 5 2 Ta GSM1405227 2 MeDIP DNA Bladder tumor UC_0493_1 male EFO EFO_0001266 AllPrep 1 UC_0493_1 M13 0 520861 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S20 0 5 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405227 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405227 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405227 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405227_sample_table.txt norm GSM1405227_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 1 UC_0493_1 M13 0 520861 bladder tumor EFO EFO_0000294 0 MS1b S20 0 5 2 Ta GSM1405226 2 MeDIP DNA Bladder tumor UC_0287_1 male EFO EFO_0001266 DNeasy 0 UC_0287_1 M15 C2 520861 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S19 1 5 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405226 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405226 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405226 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405226_sample_table.txt norm GSM1405226_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 DNeasy 0 UC_0287_1 M15 C2 520861 bladder tumor EFO EFO_0000294 0 MS2a.1 S19 1 5 3 T1 GSM1405226 1 Input DNA Bladder tumor UC_0287_1 male EFO EFO_0001266 DNeasy 0 UC_0287_1 M15 C2 520861 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S19 1 5 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405226 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405226 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405226 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405226_sample_table.txt norm GSM1405226_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 DNeasy 0 UC_0287_1 M15 C2 520861 bladder tumor EFO EFO_0000294 0 MS2a.1 S19 1 5 3 T1 GSM1405225 2 MeDIP DNA Bladder tumor UC_0345_1 male EFO EFO_0001266 DNeasy 0 UC_0345_1 M05 D 520859 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S07 1 5 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405225 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405225 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405225 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405225_sample_table.txt norm GSM1405225_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 DNeasy 0 UC_0345_1 M05 D 520859 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S07 1 5 3 T2 GSM1405225 1 Input DNA Bladder tumor UC_0345_1 male EFO EFO_0001266 DNeasy 0 UC_0345_1 M05 D 520859 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S07 1 5 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405225 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405225 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405225 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405225_sample_table.txt norm GSM1405225_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 DNeasy 0 UC_0345_1 M05 D 520859 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S07 1 5 3 T2 GSM1405224 2 MeDIP DNA Bladder tumor UC_0579_1 female EFO EFO_0001265 AllPrep 0 UC_0579_1 M12 D 520859 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S18 0 4 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405224 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405224 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405224 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405224_sample_table.txt norm GSM1405224_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip female EFO EFO_0001265 AllPrep 0 UC_0579_1 M12 D 520859 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S18 0 4 3 T2 GSM1405224 1 Input DNA Bladder tumor UC_0579_1 female EFO EFO_0001265 AllPrep 0 UC_0579_1 M12 D 520859 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S18 0 4 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405224 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405224 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405224 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405224_sample_table.txt norm GSM1405224_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip female EFO EFO_0001265 AllPrep 0 UC_0579_1 M12 D 520859 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S18 0 4 3 T2 GSM1405223 2 MeDIP DNA Bladder tumor UC_0348_1 male EFO EFO_0001266 DNeasy 0 UC_0348_1 M11 D 520862 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S13 0 4 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405223 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405223 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405223 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405223_sample_table.txt norm GSM1405223_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 DNeasy 0 UC_0348_1 M11 D 520862 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S13 0 4 3 T2 GSM1405223 1 Input DNA Bladder tumor UC_0348_1 male EFO EFO_0001266 DNeasy 0 UC_0348_1 M11 D 520862 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S13 0 4 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405223 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405223 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405223 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405223_sample_table.txt norm GSM1405223_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 DNeasy 0 UC_0348_1 M11 D 520862 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S13 0 4 3 T2 GSM1405222 1 Input DNA Bladder tumor UC_0626_1 male EFO EFO_0001266 AllPrep 0 UC_0626_1 M14 EFO EFO_0003056 C2 520816 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S18 1 3 3 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405222 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405222 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405222 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405222_sample_table.txt norm GSM1405222_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 UC_0626_1 M14 EFO EFO_0003056 C2 520816 bladder tumor EFO EFO_0000294 0 MS2a.1 S18 1 3 3 Ta GSM1405222 2 MeDIP DNA Bladder tumor UC_0626_1 male EFO EFO_0001266 AllPrep 0 UC_0626_1 M14 EFO EFO_0003056 C2 520816 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S18 1 3 3 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405222 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405222 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405222 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405222_sample_table.txt norm GSM1405222_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 UC_0626_1 M14 EFO EFO_0003056 C2 520816 bladder tumor EFO EFO_0000294 0 MS2a.1 S18 1 3 3 Ta GSM1405221 1 Input DNA Bladder tumor UC_0561_1a female EFO EFO_0001265 AllPrep 0 UC_0561_1a M03 B 520816 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S04 1 3 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405221 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405221 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405221 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405221_sample_table.txt norm GSM1405221_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip female EFO EFO_0001265 AllPrep 0 UC_0561_1a M03 B 520816 bladder tumor EFO EFO_0000294 0 MS2a.2 S04 1 3 3 T1 GSM1405221 2 MeDIP DNA Bladder tumor UC_0561_1a female EFO EFO_0001265 AllPrep 0 UC_0561_1a M03 B 520816 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S04 1 3 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405221 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405221 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405221 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405221_sample_table.txt norm GSM1405221_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip female EFO EFO_0001265 AllPrep 0 UC_0561_1a M03 B 520816 bladder tumor EFO EFO_0000294 0 MS2a.2 S04 1 3 3 T1 GSM1405220 2 MeDIP DNA Bladder tumor UC_0622_1 male EFO EFO_0001266 AllPrep 0 UC_0622_1 M05 0 520816 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S07 0 5 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405220 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405220 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405220 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405220_sample_table.txt norm GSM1405220_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 UC_0622_1 M05 0 520816 bladder tumor EFO EFO_0000294 0 MS1a S07 0 5 2 Ta GSM1405220 1 Input DNA Bladder tumor UC_0622_1 male EFO EFO_0001266 AllPrep 0 UC_0622_1 M05 0 520816 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S07 0 5 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405220 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405220 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405220 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405220_sample_table.txt norm GSM1405220_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 UC_0622_1 M05 0 520816 bladder tumor EFO EFO_0000294 0 MS1a S07 0 5 2 Ta GSM1405219 1 Input DNA Bladder tumor UC_0751_1 male EFO EFO_0001266 AllPrep 0 UC_0751_1 M09 0 520828 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S11 0 4 3 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405219 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405219 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405219 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405219_sample_table.txt norm GSM1405219_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 UC_0751_1 M09 0 520828 bladder tumor EFO EFO_0000294 0 MS2a.1 S11 0 4 3 Ta GSM1405219 2 MeDIP DNA Bladder tumor UC_0751_1 male EFO EFO_0001266 AllPrep 0 UC_0751_1 M09 0 520828 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S11 0 4 3 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405219 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405219 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405219 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405219_sample_table.txt norm GSM1405219_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 UC_0751_1 M09 0 520828 bladder tumor EFO EFO_0000294 0 MS2a.1 S11 0 4 3 Ta GSM1405218 2 MeDIP DNA Bladder tumor UC_0335_1 male EFO EFO_0001266 DNeasy 0 UC_0335_1 M05 C2 520828 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S05 1 5 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405218 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405218 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405218 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405218_sample_table.txt norm GSM1405218_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 DNeasy 0 UC_0335_1 M05 C2 520828 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S05 1 5 3 T2 GSM1405218 1 Input DNA Bladder tumor UC_0335_1 male EFO EFO_0001266 DNeasy 0 UC_0335_1 M05 C2 520828 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S05 1 5 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405218 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405218 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405218 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405218_sample_table.txt norm GSM1405218_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 DNeasy 0 UC_0335_1 M05 C2 520828 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S05 1 5 3 T2 GSM1405217 1 Input DNA Bladder tumor UC_0782_1 male EFO EFO_0001266 AllPrep 0 UC_0782_1 M04 0 520828 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S07 0 4 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405217 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405217 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405217 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405217_sample_table.txt norm GSM1405217_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 UC_0782_1 M04 0 520828 bladder tumor EFO EFO_0000294 0 MS2a.1 S07 0 4 3 T2 GSM1405217 2 MeDIP DNA Bladder tumor UC_0782_1 male EFO EFO_0001266 AllPrep 0 UC_0782_1 M04 0 520828 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S07 0 4 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405217 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405217 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405217 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405217_sample_table.txt norm GSM1405217_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.2.zip male EFO EFO_0001266 AllPrep 0 UC_0782_1 M04 0 520828 bladder tumor EFO EFO_0000294 0 MS2a.1 S07 0 4 3 T2 GSM1405216 1 Input DNA Bladder tumor UC_0336_2 male EFO EFO_0001266 DNeasy 0 UC_0336_2 M10 0 520830 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2b.2.1 S13 0 4 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405216 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405216 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405216 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405216_sample_table.txt norm GSM1405216_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 DNeasy 0 UC_0336_2 M10 0 520830 bladder tumor EFO EFO_0000294 1 MS2b.2.1 S13 0 4 2 Ta GSM1405216 2 MeDIP DNA Bladder tumor UC_0336_2 male EFO EFO_0001266 DNeasy 0 UC_0336_2 M10 0 520830 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2b.2.1 S13 0 4 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405216 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405216 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405216 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405216_sample_table.txt norm GSM1405216_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 DNeasy 0 UC_0336_2 M10 0 520830 bladder tumor EFO EFO_0000294 1 MS2b.2.1 S13 0 4 2 Ta GSM1405215 2 MeDIP DNA Bladder tumor UC_0580_1 female EFO EFO_0001265 AllPrep 0 UC_0580_1 M09 C1 520830 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S10 1 5 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405215 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405215 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405215 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405215_sample_table.txt norm GSM1405215_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 AllPrep 0 UC_0580_1 M09 C1 520830 bladder tumor EFO EFO_0000294 0 MS2a.1 S10 1 5 3 T1 GSM1405215 1 Input DNA Bladder tumor UC_0580_1 female EFO EFO_0001265 AllPrep 0 UC_0580_1 M09 C1 520830 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S10 1 5 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405215 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405215 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405215 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405215_sample_table.txt norm GSM1405215_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 AllPrep 0 UC_0580_1 M09 C1 520830 bladder tumor EFO EFO_0000294 0 MS2a.1 S10 1 5 3 T1 GSM1405214 1 Input DNA Bladder tumor UC_0537_1 male EFO EFO_0001266 AllPrep 1 UC_0537_1 M12 A1 514715 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1a S13 0 5 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405214 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405214 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405214 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405214_sample_table.txt norm GSM1405214_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 1 UC_0537_1 M12 A1 514715 bladder tumor EFO EFO_0000294 1 MS1a S13 0 5 2 Ta GSM1405214 2 MeDIP DNA Bladder tumor UC_0537_1 male EFO EFO_0001266 AllPrep 1 UC_0537_1 M12 A1 514715 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1a S13 0 5 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405214 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405214 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405214 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405214_sample_table.txt norm GSM1405214_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 1 UC_0537_1 M12 A1 514715 bladder tumor EFO EFO_0000294 1 MS1a S13 0 5 2 Ta GSM1405213 2 MeDIP DNA Bladder tumor UC_0398_1 female EFO EFO_0001265 AllPrep 0 UC_0398_1 M13 A1 514715 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S17 0 3 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405213 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405213 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405213 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405213_sample_table.txt norm GSM1405213_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 AllPrep 0 UC_0398_1 M13 A1 514715 bladder tumor EFO EFO_0000294 0 MS1a S17 0 3 1 Ta GSM1405213 1 Input DNA Bladder tumor UC_0398_1 female EFO EFO_0001265 AllPrep 0 UC_0398_1 M13 A1 514715 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S17 0 3 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405213 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405213 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405213 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405213_sample_table.txt norm GSM1405213_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 AllPrep 0 UC_0398_1 M13 A1 514715 bladder tumor EFO EFO_0000294 0 MS1a S17 0 3 1 Ta GSM1405212 2 MeDIP DNA Bladder tumor UC_0491_1 female EFO EFO_0001265 AllPrep 1 UC_0491_1 M14 EFO EFO_0003056 B 513328 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1b S22 0 5 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405212 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405212 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405212 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405212_sample_table.txt norm GSM1405212_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 AllPrep 1 UC_0491_1 M14 EFO EFO_0003056 B 513328 bladder tumor EFO EFO_0000294 1 MS1b S22 0 5 2 Ta GSM1405212 1 Input DNA Bladder tumor UC_0491_1 female EFO EFO_0001265 AllPrep 1 UC_0491_1 M14 EFO EFO_0003056 B 513328 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1b S22 0 5 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405212 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405212 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405212 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405212_sample_table.txt norm GSM1405212_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 AllPrep 1 UC_0491_1 M14 EFO EFO_0003056 B 513328 bladder tumor EFO EFO_0000294 1 MS1b S22 0 5 2 Ta GSM1405211 2 MeDIP DNA Normal Urothelium N_035_Urothel male EFO EFO_0001266 AllPrep 0 N_035_Urothel M08 Ctrl 513328 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Normal Urothelium 0 Ctrl S11 0 4 N N P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405211 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405211 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405211 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405211_sample_table.txt norm GSM1405211_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 0 N_035_Urothel M08 Ctrl 513328 Normal Urothelium 0 Ctrl S11 0 4 N N GSM1405211 1 Input DNA Normal Urothelium N_035_Urothel male EFO EFO_0001266 AllPrep 0 N_035_Urothel M08 Ctrl 513328 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Normal Urothelium 0 Ctrl S11 0 4 N N P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405211 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405211 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405211 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405211_sample_table.txt norm GSM1405211_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 0 N_035_Urothel M08 Ctrl 513328 Normal Urothelium 0 Ctrl S11 0 4 N N GSM1405210 1 Input DNA Bladder tumor UC_0506_1 female EFO EFO_0001265 AllPrep 1 UC_0506_1 M13 A2 513328 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S18 0 5 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405210 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405210 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405210 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405210_sample_table.txt norm GSM1405210_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 AllPrep 1 UC_0506_1 M13 A2 513328 bladder tumor EFO EFO_0000294 0 MS1b S18 0 5 1 Ta GSM1405210 2 MeDIP DNA Bladder tumor UC_0506_1 female EFO EFO_0001265 AllPrep 1 UC_0506_1 M13 A2 513328 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S18 0 5 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405210 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405210 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405210 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405210_sample_table.txt norm GSM1405210_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 AllPrep 1 UC_0506_1 M13 A2 513328 bladder tumor EFO EFO_0000294 0 MS1b S18 0 5 1 Ta GSM1405209 2 MeDIP DNA Bladder tumor UC_0393_1 male EFO EFO_0001266 AllPrep 1 UC_0393_1 M06 C2 521749 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S05 0 1 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405209 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405209 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405209 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405209_sample_table.txt norm GSM1405209_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 1 UC_0393_1 M06 C2 521749 bladder tumor EFO EFO_0000294 0 MS1b S05 0 1 1 Ta GSM1405209 1 Input DNA Bladder tumor UC_0393_1 male EFO EFO_0001266 AllPrep 1 UC_0393_1 M06 C2 521749 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S05 0 1 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405209 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405209 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405209 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405209_sample_table.txt norm GSM1405209_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 1 UC_0393_1 M06 C2 521749 bladder tumor EFO EFO_0000294 0 MS1b S05 0 1 1 Ta GSM1405208 1 Input DNA Bladder tumor UC_0694_1 female EFO EFO_0001265 AllPrep 0 UC_0694_1 M11 C1 521749 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S14 0 1 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405208 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405208 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405208 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405208_sample_table.txt norm GSM1405208_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 AllPrep 0 UC_0694_1 M11 C1 521749 bladder tumor EFO EFO_0000294 0 MS2a.1 S14 0 1 3 T1 GSM1405208 2 MeDIP DNA Bladder tumor UC_0694_1 female EFO EFO_0001265 AllPrep 0 UC_0694_1 M11 C1 521749 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S14 0 1 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405208 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405208 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405208 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405208_sample_table.txt norm GSM1405208_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 AllPrep 0 UC_0694_1 M11 C1 521749 bladder tumor EFO EFO_0000294 0 MS2a.1 S14 0 1 3 T1 GSM1405207 2 MeDIP DNA Bladder tumor UC_0055_1 female EFO EFO_0001265 DNeasy 0 UC_0055_1 M10 D 521749 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S14 0 3 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405207 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405207 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405207 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405207_sample_table.txt norm GSM1405207_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 DNeasy 0 UC_0055_1 M10 D 521749 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S14 0 3 3 T2 GSM1405207 1 Input DNA Bladder tumor UC_0055_1 female EFO EFO_0001265 DNeasy 0 UC_0055_1 M10 D 521749 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S14 0 3 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405207 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405207 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405207 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405207_sample_table.txt norm GSM1405207_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 DNeasy 0 UC_0055_1 M10 D 521749 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S14 0 3 3 T2 GSM1405206 1 Input DNA Bladder tumor UC_0556_1 male EFO EFO_0001266 AllPrep 0 UC_0556_1 M05 C2 520827 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S08 1 1 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405206 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405206 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405206 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405206_sample_table.txt norm GSM1405206_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 0 UC_0556_1 M05 C2 520827 bladder tumor EFO EFO_0000294 0 MS2a.2 S08 1 1 3 T2 GSM1405206 2 MeDIP DNA Bladder tumor UC_0556_1 male EFO EFO_0001266 AllPrep 0 UC_0556_1 M05 C2 520827 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S08 1 1 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405206 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405206 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405206 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405206_sample_table.txt norm GSM1405206_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 0 UC_0556_1 M05 C2 520827 bladder tumor EFO EFO_0000294 0 MS2a.2 S08 1 1 3 T2 GSM1405205 2 MeDIP DNA Bladder tumor UC_0563_1 female EFO EFO_0001265 AllPrep 1 UC_0563_1 M10 0 520827 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1a S15 0 1 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405205 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405205 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405205 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405205_sample_table.txt norm GSM1405205_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 AllPrep 1 UC_0563_1 M10 0 520827 bladder tumor EFO EFO_0000294 1 MS1a S15 0 1 2 Ta GSM1405205 1 Input DNA Bladder tumor UC_0563_1 female EFO EFO_0001265 AllPrep 1 UC_0563_1 M10 0 520827 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1a S15 0 1 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405205 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405205 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405205 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405205_sample_table.txt norm GSM1405205_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 AllPrep 1 UC_0563_1 M10 0 520827 bladder tumor EFO EFO_0000294 1 MS1a S15 0 1 2 Ta GSM1405204 2 MeDIP DNA Bladder tumor UC_0713_1 male EFO EFO_0001266 AllPrep 0 UC_0713_1 M12 C1 520827 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S17 0 1 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405204 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405204 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405204 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405204_sample_table.txt norm GSM1405204_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 0 UC_0713_1 M12 C1 520827 bladder tumor EFO EFO_0000294 0 MS2a.2 S17 0 1 3 T2 GSM1405204 1 Input DNA Bladder tumor UC_0713_1 male EFO EFO_0001266 AllPrep 0 UC_0713_1 M12 C1 520827 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S17 0 1 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405204 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405204 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405204 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405204_sample_table.txt norm GSM1405204_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 0 UC_0713_1 M12 C1 520827 bladder tumor EFO EFO_0000294 0 MS2a.2 S17 0 1 3 T2 GSM1405203 1 Input DNA Bladder tumor UC_0575_1 male EFO EFO_0001266 AllPrep 1 UC_0575_1 M11 0 519948 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S14 0 2 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405203 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405203 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405203 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405203_sample_table.txt norm GSM1405203_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 1 UC_0575_1 M11 0 519948 bladder tumor EFO EFO_0000294 0 MS1a S14 0 2 1 Ta GSM1405203 2 MeDIP DNA Bladder tumor UC_0575_1 male EFO EFO_0001266 AllPrep 1 UC_0575_1 M11 0 519948 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S14 0 2 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405203 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405203 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405203 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405203_sample_table.txt norm GSM1405203_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 1 UC_0575_1 M11 0 519948 bladder tumor EFO EFO_0000294 0 MS1a S14 0 2 1 Ta GSM1405202 1 Input DNA Bladder tumor UC_0213_1 male EFO EFO_0001266 DNeasy 0 UC_0213_1 M10 C2 519948 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S16 0 2 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405202 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405202 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405202 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405202_sample_table.txt norm GSM1405202_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 DNeasy 0 UC_0213_1 M10 C2 519948 bladder tumor EFO EFO_0000294 0 MS1b S16 0 2 2 T1 GSM1405202 2 MeDIP DNA Bladder tumor UC_0213_1 male EFO EFO_0001266 DNeasy 0 UC_0213_1 M10 C2 519948 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S16 0 2 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405202 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405202 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405202 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405202_sample_table.txt norm GSM1405202_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 DNeasy 0 UC_0213_1 M10 C2 519948 bladder tumor EFO EFO_0000294 0 MS1b S16 0 2 2 T1 GSM1405201 1 Input DNA Bladder tumor UC_0103_1 female EFO EFO_0001265 DNeasy 0 UC_0103_1 M13 D 519856 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S18 0 3 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405201 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405201 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405201 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405201_sample_table.txt norm GSM1405201_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 DNeasy 0 UC_0103_1 M13 D 519856 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S18 0 3 3 T2 GSM1405201 2 MeDIP DNA Bladder tumor UC_0103_1 female EFO EFO_0001265 DNeasy 0 UC_0103_1 M13 D 519856 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S18 0 3 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405201 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405201 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405201 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405201_sample_table.txt norm GSM1405201_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 DNeasy 0 UC_0103_1 M13 D 519856 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S18 0 3 3 T2 GSM1405200 1 Input DNA Bladder tumor UC_0279_1 male EFO EFO_0001266 DNeasy 1 UC_0279_1 M07 0 520186 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S07 0 3 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405200 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405200 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405200 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405200_sample_table.txt norm GSM1405200_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 DNeasy 1 UC_0279_1 M07 0 520186 bladder tumor EFO EFO_0000294 0 MS1a S07 0 3 2 Ta GSM1405200 2 MeDIP DNA Bladder tumor UC_0279_1 male EFO EFO_0001266 DNeasy 1 UC_0279_1 M07 0 520186 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S07 0 3 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405200 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405200 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405200 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405200_sample_table.txt norm GSM1405200_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 DNeasy 1 UC_0279_1 M07 0 520186 bladder tumor EFO EFO_0000294 0 MS1a S07 0 3 2 Ta GSM1405199 1 Input DNA Bladder tumor UC_0760_1 male EFO EFO_0001266 AllPrep 1 UC_0760_1 M03 0 520186 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S04 0 1 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405199 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405199 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405199 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405199_sample_table.txt norm GSM1405199_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 1 UC_0760_1 M03 0 520186 bladder tumor EFO EFO_0000294 0 MS1b S04 0 1 1 Ta GSM1405199 2 MeDIP DNA Bladder tumor UC_0760_1 male EFO EFO_0001266 AllPrep 1 UC_0760_1 M03 0 520186 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S04 0 1 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405199 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405199 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405199 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405199_sample_table.txt norm GSM1405199_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 1 UC_0760_1 M03 0 520186 bladder tumor EFO EFO_0000294 0 MS1b S04 0 1 1 Ta GSM1405198 2 MeDIP DNA Bladder tumor UC_0415_1 male EFO EFO_0001266 AllPrep 1 UC_0415_1 M14 EFO EFO_0003056 A2 520189 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1a S21 0 1 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405198 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405198 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405198 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405198_sample_table.txt norm GSM1405198_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 1 UC_0415_1 M14 EFO EFO_0003056 A2 520189 bladder tumor EFO EFO_0000294 1 MS1a S21 0 1 2 Ta GSM1405198 1 Input DNA Bladder tumor UC_0415_1 male EFO EFO_0001266 AllPrep 1 UC_0415_1 M14 EFO EFO_0003056 A2 520189 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1a S21 0 1 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405198 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405198 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405198 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405198_sample_table.txt norm GSM1405198_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 1 UC_0415_1 M14 EFO EFO_0003056 A2 520189 bladder tumor EFO EFO_0000294 1 MS1a S21 0 1 2 Ta GSM1405197 2 MeDIP DNA Normal Urothelium N_037_Urothel male EFO EFO_0001266 AllPrep 0 N_037_Urothel M06 Ctrl 520189 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Normal Urothelium 0 Ctrl S09 0 2 N N P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405197 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405197 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405197 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405197_sample_table.txt norm GSM1405197_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 0 N_037_Urothel M06 Ctrl 520189 Normal Urothelium 0 Ctrl S09 0 2 N N GSM1405197 1 Input DNA Normal Urothelium N_037_Urothel male EFO EFO_0001266 AllPrep 0 N_037_Urothel M06 Ctrl 520189 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Normal Urothelium 0 Ctrl S09 0 2 N N P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405197 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405197 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405197 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405197_sample_table.txt norm GSM1405197_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 0 N_037_Urothel M06 Ctrl 520189 Normal Urothelium 0 Ctrl S09 0 2 N N GSM1405196 2 MeDIP DNA Bladder tumor UC_0542_2 female EFO EFO_0001265 DNeasy 1 UC_0542_2 M14 EFO EFO_0003056 0 520298 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1b S17 0 2 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405196 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405196 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405196 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405196_sample_table.txt norm GSM1405196_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 DNeasy 1 UC_0542_2 M14 EFO EFO_0003056 0 520298 bladder tumor EFO EFO_0000294 1 MS1b S17 0 2 1 Ta GSM1405196 1 Input DNA Bladder tumor UC_0542_2 female EFO EFO_0001265 DNeasy 1 UC_0542_2 M14 EFO EFO_0003056 0 520298 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1b S17 0 2 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405196 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405196 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405196 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405196_sample_table.txt norm GSM1405196_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip female EFO EFO_0001265 DNeasy 1 UC_0542_2 M14 EFO EFO_0003056 0 520298 bladder tumor EFO EFO_0000294 1 MS1b S17 0 2 1 Ta GSM1405195 1 Input DNA Bladder tumor UC_0601_1 male EFO EFO_0001266 AllPrep 0 UC_0601_1 M04 0 520298 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S05 0 1 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405195 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405195 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405195 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405195_sample_table.txt norm GSM1405195_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 0 UC_0601_1 M04 0 520298 bladder tumor EFO EFO_0000294 0 MS2a.2 S05 0 1 2 Ta GSM1405195 2 MeDIP DNA Bladder tumor UC_0601_1 male EFO EFO_0001266 AllPrep 0 UC_0601_1 M04 0 520298 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S05 0 1 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405195 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405195 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405195 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405195_sample_table.txt norm GSM1405195_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 0 UC_0601_1 M04 0 520298 bladder tumor EFO EFO_0000294 0 MS2a.2 S05 0 1 2 Ta GSM1405194 1 Input DNA Bladder tumor UC_0781_1 male EFO EFO_0001266 AllPrep 0 UC_0781_1 M11 0 520298 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2a.2 S16 1 2 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405194 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405194 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405194 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405194_sample_table.txt norm GSM1405194_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 0 UC_0781_1 M11 0 520298 bladder tumor EFO EFO_0000294 1 MS2a.2 S16 1 2 3 T2 GSM1405194 2 MeDIP DNA Bladder tumor UC_0781_1 male EFO EFO_0001266 AllPrep 0 UC_0781_1 M11 0 520298 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2a.2 S16 1 2 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405194 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405194 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405194 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405194_sample_table.txt norm GSM1405194_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.3.zip male EFO EFO_0001266 AllPrep 0 UC_0781_1 M11 0 520298 bladder tumor EFO EFO_0000294 1 MS2a.2 S16 1 2 3 T2 GSM1405193 1 Input DNA Bladder tumor UC_0712_1 female EFO EFO_0001265 AllPrep 1 UC_0712_1 M07 A1 520306 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S06 0 1 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405193 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405193 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405193 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405193_sample_table.txt norm GSM1405193_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip female EFO EFO_0001265 AllPrep 1 UC_0712_1 M07 A1 520306 bladder tumor EFO EFO_0000294 0 MS1b S06 0 1 1 Ta GSM1405193 2 MeDIP DNA Bladder tumor UC_0712_1 female EFO EFO_0001265 AllPrep 1 UC_0712_1 M07 A1 520306 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S06 0 1 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405193 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405193 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405193 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405193_sample_table.txt norm GSM1405193_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip female EFO EFO_0001265 AllPrep 1 UC_0712_1 M07 A1 520306 bladder tumor EFO EFO_0000294 0 MS1b S06 0 1 1 Ta GSM1405192 2 MeDIP DNA Bladder tumor UC_0530_1 male EFO EFO_0001266 AllPrep 1 UC_0530_1 M12 A2 520306 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S17 0 2 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405192 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405192 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405192 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405192_sample_table.txt norm GSM1405192_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 1 UC_0530_1 M12 A2 520306 bladder tumor EFO EFO_0000294 0 MS1b S17 0 2 2 T1 GSM1405192 1 Input DNA Bladder tumor UC_0530_1 male EFO EFO_0001266 AllPrep 1 UC_0530_1 M12 A2 520306 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S17 0 2 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405192 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405192 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405192 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405192_sample_table.txt norm GSM1405192_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 1 UC_0530_1 M12 A2 520306 bladder tumor EFO EFO_0000294 0 MS1b S17 0 2 2 T1 GSM1405191 2 MeDIP DNA Bladder tumor UC_0576_1 female EFO EFO_0001265 AllPrep 1 UC_0576_1 M15 C2 520306 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S22 0 1 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405191 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405191 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405191 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405191_sample_table.txt norm GSM1405191_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip female EFO EFO_0001265 AllPrep 1 UC_0576_1 M15 C2 520306 bladder tumor EFO EFO_0000294 0 MS1b S22 0 1 1 Ta GSM1405191 1 Input DNA Bladder tumor UC_0576_1 female EFO EFO_0001265 AllPrep 1 UC_0576_1 M15 C2 520306 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S22 0 1 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405191 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405191 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405191 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405191_sample_table.txt norm GSM1405191_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip female EFO EFO_0001265 AllPrep 1 UC_0576_1 M15 C2 520306 bladder tumor EFO EFO_0000294 0 MS1b S22 0 1 1 Ta GSM1405190 1 Input DNA Bladder tumor UC_0583_1 female EFO EFO_0001265 AllPrep 0 UC_0583_1 M07 0 519934 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S10 0 2 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405190 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405190 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405190 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405190_sample_table.txt norm GSM1405190_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip female EFO EFO_0001265 AllPrep 0 UC_0583_1 M07 0 519934 bladder tumor EFO EFO_0000294 0 MS2a.2 S10 0 2 3 T1 GSM1405190 2 MeDIP DNA Bladder tumor UC_0583_1 female EFO EFO_0001265 AllPrep 0 UC_0583_1 M07 0 519934 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S10 0 2 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405190 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405190 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405190 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405190_sample_table.txt norm GSM1405190_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip female EFO EFO_0001265 AllPrep 0 UC_0583_1 M07 0 519934 bladder tumor EFO EFO_0000294 0 MS2a.2 S10 0 2 3 T1 GSM1405189 1 Input DNA Bladder tumor UC_0565_1 male EFO EFO_0001266 AllPrep 0 UC_0565_1 M01 0 519934 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S02 0 2 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405189 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405189 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405189 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405189_sample_table.txt norm GSM1405189_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0565_1 M01 0 519934 bladder tumor EFO EFO_0000294 0 MS1b S02 0 2 2 Ta GSM1405189 2 MeDIP DNA Bladder tumor UC_0565_1 male EFO EFO_0001266 AllPrep 0 UC_0565_1 M01 0 519934 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S02 0 2 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405189 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405189 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405189 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405189_sample_table.txt norm GSM1405189_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0565_1 M01 0 519934 bladder tumor EFO EFO_0000294 0 MS1b S02 0 2 2 Ta GSM1405188 1 Input DNA Bladder tumor UC_0421_1 male EFO EFO_0001266 AllPrep 0 UC_0421_1 M01 0 519934 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S01 0 2 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405188 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405188 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405188 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405188_sample_table.txt norm GSM1405188_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0421_1 M01 0 519934 bladder tumor EFO EFO_0000294 0 MS1b S01 0 2 1 Ta GSM1405188 2 MeDIP DNA Bladder tumor UC_0421_1 male EFO EFO_0001266 AllPrep 0 UC_0421_1 M01 0 519934 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S01 0 2 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405188 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405188 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405188 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405188_sample_table.txt norm GSM1405188_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0421_1 M01 0 519934 bladder tumor EFO EFO_0000294 0 MS1b S01 0 2 1 Ta GSM1405187 1 Input DNA Bladder tumor UC_0429_1a male EFO EFO_0001266 AllPrep 0 UC_0429_1a M15 C2 519931 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1b S22 0 1 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405187 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405187 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405187 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405187_sample_table.txt norm GSM1405187_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0429_1a M15 C2 519931 bladder tumor EFO EFO_0000294 1 MS1b S22 0 1 1 Ta GSM1405187 2 MeDIP DNA Bladder tumor UC_0429_1a male EFO EFO_0001266 AllPrep 0 UC_0429_1a M15 C2 519931 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1b S22 0 1 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405187 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405187 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405187 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405187_sample_table.txt norm GSM1405187_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0429_1a M15 C2 519931 bladder tumor EFO EFO_0000294 1 MS1b S22 0 1 1 Ta GSM1405186 1 Input DNA Bladder tumor UC_0154_2 male EFO EFO_0001266 DNeasy 0 UC_0154_2 M15 D 519931 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S22 1 1 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405186 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405186 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405186 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405186_sample_table.txt norm GSM1405186_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 DNeasy 0 UC_0154_2 M15 D 519931 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S22 1 1 3 T2 GSM1405186 2 MeDIP DNA Bladder tumor UC_0154_2 male EFO EFO_0001266 DNeasy 0 UC_0154_2 M15 D 519931 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S22 1 1 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405186 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405186 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405186 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405186_sample_table.txt norm GSM1405186_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 DNeasy 0 UC_0154_2 M15 D 519931 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S22 1 1 3 T2 GSM1405185 1 Input DNA Bladder tumor UC_0525_1 male EFO EFO_0001266 AllPrep 0 UC_0525_1 M01 0 519931 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2a.1 S02 0 1 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405185 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405185 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405185 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405185_sample_table.txt norm GSM1405185_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0525_1 M01 0 519931 bladder tumor EFO EFO_0000294 1 MS2a.1 S02 0 1 3 T1 GSM1405185 2 MeDIP DNA Bladder tumor UC_0525_1 male EFO EFO_0001266 AllPrep 0 UC_0525_1 M01 0 519931 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2a.1 S02 0 1 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405185 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405185 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405185 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405185_sample_table.txt norm GSM1405185_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0525_1 M01 0 519931 bladder tumor EFO EFO_0000294 1 MS2a.1 S02 0 1 3 T1 GSM1405184 2 MeDIP DNA Bladder tumor UC_0456_2 male EFO EFO_0001266 DNeasy 0 UC_0456_2 M12 B 520304 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S13 0 3 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405184 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405184 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405184 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405184_sample_table.txt norm GSM1405184_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 DNeasy 0 UC_0456_2 M12 B 520304 bladder tumor EFO EFO_0000294 0 MS1b S13 0 3 2 Ta GSM1405184 1 Input DNA Bladder tumor UC_0456_2 male EFO EFO_0001266 DNeasy 0 UC_0456_2 M12 B 520304 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S13 0 3 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405184 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405184 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405184 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405184_sample_table.txt norm GSM1405184_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 DNeasy 0 UC_0456_2 M12 B 520304 bladder tumor EFO EFO_0000294 0 MS1b S13 0 3 2 Ta GSM1405183 2 MeDIP DNA Normal Urothelium N_034_Urothel male EFO EFO_0001266 AllPrep 0 N_034_Urothel M10 Ctrl 520304 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Normal Urothelium 0 Ctrl S15 0 1 N N P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405183 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405183 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405183 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405183_sample_table.txt norm GSM1405183_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 N_034_Urothel M10 Ctrl 520304 Normal Urothelium 0 Ctrl S15 0 1 N N GSM1405183 1 Input DNA Normal Urothelium N_034_Urothel male EFO EFO_0001266 AllPrep 0 N_034_Urothel M10 Ctrl 520304 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Normal Urothelium 0 Ctrl S15 0 1 N N P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405183 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405183 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405183 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405183_sample_table.txt norm GSM1405183_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 N_034_Urothel M10 Ctrl 520304 Normal Urothelium 0 Ctrl S15 0 1 N N GSM1405182 2 MeDIP DNA Bladder tumor UC_0545_1 male EFO EFO_0001266 DNeasy 1 UC_0545_1 M05 A2 519930 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2b.2.1 S06 1 1 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405182 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405182 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405182 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405182_sample_table.txt norm GSM1405182_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 DNeasy 1 UC_0545_1 M05 A2 519930 bladder tumor EFO EFO_0000294 1 MS2b.2.1 S06 1 1 3 T2 GSM1405182 1 Input DNA Bladder tumor UC_0545_1 male EFO EFO_0001266 DNeasy 1 UC_0545_1 M05 A2 519930 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS2b.2.1 S06 1 1 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405182 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405182 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405182 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405182_sample_table.txt norm GSM1405182_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 DNeasy 1 UC_0545_1 M05 A2 519930 bladder tumor EFO EFO_0000294 1 MS2b.2.1 S06 1 1 3 T2 GSM1405181 2 MeDIP DNA Bladder tumor UC_0195_1 female EFO EFO_0001265 DNeasy 0 UC_0195_1 M15 C2 519930 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S21 0 3 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405181 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405181 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405181 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405181_sample_table.txt norm GSM1405181_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip female EFO EFO_0001265 DNeasy 0 UC_0195_1 M15 C2 519930 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S21 0 3 3 T2 GSM1405181 1 Input DNA Bladder tumor UC_0195_1 female EFO EFO_0001265 DNeasy 0 UC_0195_1 M15 C2 519930 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S21 0 3 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405181 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405181 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405181 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405181_sample_table.txt norm GSM1405181_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip female EFO EFO_0001265 DNeasy 0 UC_0195_1 M15 C2 519930 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S21 0 3 3 T2 GSM1405180 2 MeDIP DNA Bladder tumor UC_0720_1 male EFO EFO_0001266 AllPrep 0 UC_0720_1 M08 0 519932 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S09 0 3 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405180 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405180 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405180 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405180_sample_table.txt norm GSM1405180_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0720_1 M08 0 519932 bladder tumor EFO EFO_0000294 0 MS2a.1 S09 0 3 2 Ta GSM1405180 1 Input DNA Bladder tumor UC_0720_1 male EFO EFO_0001266 AllPrep 0 UC_0720_1 M08 0 519932 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S09 0 3 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405180 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405180 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405180 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405180_sample_table.txt norm GSM1405180_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0720_1 M08 0 519932 bladder tumor EFO EFO_0000294 0 MS2a.1 S09 0 3 2 Ta GSM1405179 1 Input DNA Bladder tumor UC_0619_1 female EFO EFO_0001265 AllPrep 0 UC_0619_1 M09 0 519933 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S09 1 2 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405179 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405179 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405179 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405179_sample_table.txt norm GSM1405179_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip female EFO EFO_0001265 AllPrep 0 UC_0619_1 M09 0 519933 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S09 1 2 3 T1 GSM1405179 2 MeDIP DNA Bladder tumor UC_0619_1 female EFO EFO_0001265 AllPrep 0 UC_0619_1 M09 0 519933 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S09 1 2 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405179 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405179 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405179 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405179_sample_table.txt norm GSM1405179_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip female EFO EFO_0001265 AllPrep 0 UC_0619_1 M09 0 519933 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S09 1 2 3 T1 GSM1405178 1 Input DNA Bladder tumor UC_0405_1 male EFO EFO_0001266 AllPrep 0 UC_0405_1 M10 A1 519933 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S15 0 1 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405178 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405178 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405178 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405178_sample_table.txt norm GSM1405178_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0405_1 M10 A1 519933 bladder tumor EFO EFO_0000294 0 MS1a S15 0 1 1 Ta GSM1405178 2 MeDIP DNA Bladder tumor UC_0405_1 male EFO EFO_0001266 AllPrep 0 UC_0405_1 M10 A1 519933 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S15 0 1 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405178 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405178 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405178 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405178_sample_table.txt norm GSM1405178_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0405_1 M10 A1 519933 bladder tumor EFO EFO_0000294 0 MS1a S15 0 1 1 Ta GSM1405177 1 Input DNA Bladder tumor UC_0598_1 male EFO EFO_0001266 AllPrep 0 UC_0598_1 M06 B 520297 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S08 0 1 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405177 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405177 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405177 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405177_sample_table.txt norm GSM1405177_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0598_1 M06 B 520297 bladder tumor EFO EFO_0000294 0 MS1a S08 0 1 2 Ta GSM1405177 2 MeDIP DNA Bladder tumor UC_0598_1 male EFO EFO_0001266 AllPrep 0 UC_0598_1 M06 B 520297 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S08 0 1 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405177 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405177 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405177 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405177_sample_table.txt norm GSM1405177_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0598_1 M06 B 520297 bladder tumor EFO EFO_0000294 0 MS1a S08 0 1 2 Ta GSM1405176 2 MeDIP DNA Bladder tumor UC_0162_1 male EFO EFO_0001266 DNeasy 1 UC_0162_1 M06 A2 520297 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S10 0 3 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405176 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405176 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405176 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405176_sample_table.txt norm GSM1405176_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 DNeasy 1 UC_0162_1 M06 A2 520297 bladder tumor EFO EFO_0000294 0 MS1a S10 0 3 2 Ta GSM1405176 1 Input DNA Bladder tumor UC_0162_1 male EFO EFO_0001266 DNeasy 1 UC_0162_1 M06 A2 520297 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S10 0 3 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405176 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405176 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405176 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405176_sample_table.txt norm GSM1405176_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 DNeasy 1 UC_0162_1 M06 A2 520297 bladder tumor EFO EFO_0000294 0 MS1a S10 0 3 2 Ta GSM1405175 2 MeDIP DNA Bladder tumor UC_0384_1 male EFO EFO_0001266 DNeasy 0 UC_0384_1 M04 C1 520302 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S05 1 2 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405175 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405175 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405175 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405175_sample_table.txt norm GSM1405175_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 DNeasy 0 UC_0384_1 M04 C1 520302 bladder tumor EFO EFO_0000294 0 MS2a.1 S05 1 2 3 T1 GSM1405175 1 Input DNA Bladder tumor UC_0384_1 male EFO EFO_0001266 DNeasy 0 UC_0384_1 M04 C1 520302 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S05 1 2 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405175 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405175 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405175 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405175_sample_table.txt norm GSM1405175_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 DNeasy 0 UC_0384_1 M04 C1 520302 bladder tumor EFO EFO_0000294 0 MS2a.1 S05 1 2 3 T1 GSM1405174 2 MeDIP DNA Bladder tumor UC_0746_1 male EFO EFO_0001266 AllPrep 0 UC_0746_1 M13 0 520302 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S20 0 2 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405174 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405174 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405174 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405174_sample_table.txt norm GSM1405174_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0746_1 M13 0 520302 bladder tumor EFO EFO_0000294 0 MS2a.2 S20 0 2 3 T2 GSM1405174 1 Input DNA Bladder tumor UC_0746_1 male EFO EFO_0001266 AllPrep 0 UC_0746_1 M13 0 520302 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S20 0 2 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405174 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405174 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405174 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405174_sample_table.txt norm GSM1405174_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0746_1 M13 0 520302 bladder tumor EFO EFO_0000294 0 MS2a.2 S20 0 2 3 T2 GSM1405173 2 MeDIP DNA Bladder tumor UC_0717_1 male EFO EFO_0001266 AllPrep 0 UC_0717_1 M04 0 520302 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S08 0 1 2 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405173 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405173 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405173 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405173_sample_table.txt norm GSM1405173_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0717_1 M04 0 520302 bladder tumor EFO EFO_0000294 0 MS1b S08 0 1 2 T2 GSM1405173 1 Input DNA Bladder tumor UC_0717_1 male EFO EFO_0001266 AllPrep 0 UC_0717_1 M04 0 520302 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S08 0 1 2 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405173 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405173 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405173 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405173_sample_table.txt norm GSM1405173_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 0 UC_0717_1 M04 0 520302 bladder tumor EFO EFO_0000294 0 MS1b S08 0 1 2 T2 GSM1405172 2 MeDIP DNA Bladder tumor UC_0600_1 female EFO EFO_0001265 AllPrep 1 UC_0600_1 M09 0 520301 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S15 0 2 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405172 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405172 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405172 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405172_sample_table.txt norm GSM1405172_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip female EFO EFO_0001265 AllPrep 1 UC_0600_1 M09 0 520301 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S15 0 2 3 T2 GSM1405172 1 Input DNA Bladder tumor UC_0600_1 female EFO EFO_0001265 AllPrep 1 UC_0600_1 M09 0 520301 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S15 0 2 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405172 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405172 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405172 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405172_sample_table.txt norm GSM1405172_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip female EFO EFO_0001265 AllPrep 1 UC_0600_1 M09 0 520301 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S15 0 2 3 T2 GSM1405171 2 MeDIP DNA Bladder tumor UC_0704_1 male EFO EFO_0001266 AllPrep 1 UC_0704_1 M13 B 520301 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S19 0 2 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405171 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405171 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405171 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405171_sample_table.txt norm GSM1405171_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 1 UC_0704_1 M13 B 520301 bladder tumor EFO EFO_0000294 0 MS1b S19 0 2 3 T2 GSM1405171 1 Input DNA Bladder tumor UC_0704_1 male EFO EFO_0001266 AllPrep 1 UC_0704_1 M13 B 520301 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S19 0 2 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405171 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405171 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405171 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405171_sample_table.txt norm GSM1405171_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.4.zip male EFO EFO_0001266 AllPrep 1 UC_0704_1 M13 B 520301 bladder tumor EFO EFO_0000294 0 MS1b S19 0 2 3 T2 GSM1405170 2 MeDIP DNA Bladder tumor UC_0766_1 male EFO EFO_0001266 AllPrep 0 UC_0766_1 M13 0 520296 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S19 1 2 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405170 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405170 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405170 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405170_sample_table.txt norm GSM1405170_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 AllPrep 0 UC_0766_1 M13 0 520296 bladder tumor EFO EFO_0000294 0 MS1a S19 1 2 2 Ta GSM1405170 1 Input DNA Bladder tumor UC_0766_1 male EFO EFO_0001266 AllPrep 0 UC_0766_1 M13 0 520296 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S19 1 2 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405170 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405170 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405170 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405170_sample_table.txt norm GSM1405170_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 AllPrep 0 UC_0766_1 M13 0 520296 bladder tumor EFO EFO_0000294 0 MS1a S19 1 2 2 Ta GSM1405169 2 MeDIP DNA Bladder tumor UC_0211_2 male EFO EFO_0001266 DNeasy 1 UC_0211_2 M03 0 520296 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S04 0 1 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405169 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405169 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405169 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405169_sample_table.txt norm GSM1405169_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 DNeasy 1 UC_0211_2 M03 0 520296 bladder tumor EFO EFO_0000294 0 MS1b S04 0 1 2 Ta GSM1405169 1 Input DNA Bladder tumor UC_0211_2 male EFO EFO_0001266 DNeasy 1 UC_0211_2 M03 0 520296 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S04 0 1 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405169 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405169 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405169 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405169_sample_table.txt norm GSM1405169_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 DNeasy 1 UC_0211_2 M03 0 520296 bladder tumor EFO EFO_0000294 0 MS1b S04 0 1 2 Ta GSM1405168 1 Input DNA Bladder tumor UC_0549_1 male EFO EFO_0001266 AllPrep 1 UC_0549_1 M14 EFO EFO_0003056 0 520296 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S22 0 3 2 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405168 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405168 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405168 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405168_sample_table.txt norm GSM1405168_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 AllPrep 1 UC_0549_1 M14 EFO EFO_0003056 0 520296 bladder tumor EFO EFO_0000294 0 MS1b S22 0 3 2 T2 GSM1405168 2 MeDIP DNA Bladder tumor UC_0549_1 male EFO EFO_0001266 AllPrep 1 UC_0549_1 M14 EFO EFO_0003056 0 520296 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1b S22 0 3 2 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405168 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405168 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405168 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405168_sample_table.txt norm GSM1405168_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 AllPrep 1 UC_0549_1 M14 EFO EFO_0003056 0 520296 bladder tumor EFO EFO_0000294 0 MS1b S22 0 3 2 T2 GSM1405167 2 MeDIP DNA Bladder tumor UC_0523_1 male EFO EFO_0001266 AllPrep 1 UC_0523_1 M03 0 520293 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S04 0 1 3 TX EFO EFO_0004948 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405167 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405167 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405167 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405167_sample_table.txt norm GSM1405167_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 AllPrep 1 UC_0523_1 M03 0 520293 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S04 0 1 3 TX EFO EFO_0004948 GSM1405167 1 Input DNA Bladder tumor UC_0523_1 male EFO EFO_0001266 AllPrep 1 UC_0523_1 M03 0 520293 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S04 0 1 3 TX EFO EFO_0004948 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405167 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405167 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405167 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405167_sample_table.txt norm GSM1405167_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 AllPrep 1 UC_0523_1 M03 0 520293 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S04 0 1 3 TX EFO EFO_0004948 GSM1405166 2 MeDIP DNA Bladder tumor UC_0230_1 male EFO EFO_0001266 DNeasy 1 UC_0230_1 M07 D 520293 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S9 1 3 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405166 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405166 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405166 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405166_sample_table.txt norm GSM1405166_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 DNeasy 1 UC_0230_1 M07 D 520293 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S9 1 3 3 T1 GSM1405166 1 Input DNA Bladder tumor UC_0230_1 male EFO EFO_0001266 DNeasy 1 UC_0230_1 M07 D 520293 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S9 1 3 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405166 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405166 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405166 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405166_sample_table.txt norm GSM1405166_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 DNeasy 1 UC_0230_1 M07 D 520293 bladder tumor EFO EFO_0000294 0 MS2b.2.2 S9 1 3 3 T1 GSM1405165 1 Input DNA Bladder tumor UC_0115_1 male EFO EFO_0001266 DNeasy 1 UC_0115_1 M06 A1 520293 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S12 0 2 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405165 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405165 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405165 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405165_sample_table.txt norm GSM1405165_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 DNeasy 1 UC_0115_1 M06 A1 520293 bladder tumor EFO EFO_0000294 0 MS1a S12 0 2 2 T1 GSM1405165 2 MeDIP DNA Bladder tumor UC_0115_1 male EFO EFO_0001266 DNeasy 1 UC_0115_1 M06 A1 520293 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S12 0 2 2 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405165 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405165 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405165 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405165_sample_table.txt norm GSM1405165_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 DNeasy 1 UC_0115_1 M06 A1 520293 bladder tumor EFO EFO_0000294 0 MS1a S12 0 2 2 T1 GSM1405164 2 MeDIP DNA Bladder tumor UC_0524_1 female EFO EFO_0001265 AllPrep 1 UC_0524_1 M09 0 520299 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S10 0 2 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405164 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405164 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405164 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405164_sample_table.txt norm GSM1405164_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip female EFO EFO_0001265 AllPrep 1 UC_0524_1 M09 0 520299 bladder tumor EFO EFO_0000294 0 MS2a.2 S10 0 2 3 T2 GSM1405164 1 Input DNA Bladder tumor UC_0524_1 female EFO EFO_0001265 AllPrep 1 UC_0524_1 M09 0 520299 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.2 S10 0 2 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405164 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405164 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405164 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405164_sample_table.txt norm GSM1405164_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip female EFO EFO_0001265 AllPrep 1 UC_0524_1 M09 0 520299 bladder tumor EFO EFO_0000294 0 MS2a.2 S10 0 2 3 T2 GSM1405163 1 Input DNA Bladder tumor UC_0615_1 male EFO EFO_0001266 AllPrep 0 UC_0615_1 M05 C2 520299 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S05 1 3 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405163 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405163 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405163 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405163_sample_table.txt norm GSM1405163_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 AllPrep 0 UC_0615_1 M05 C2 520299 bladder tumor EFO EFO_0000294 0 MS2a.1 S05 1 3 3 T2 GSM1405163 2 MeDIP DNA Bladder tumor UC_0615_1 male EFO EFO_0001266 AllPrep 0 UC_0615_1 M05 C2 520299 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2a.1 S05 1 3 3 T2 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405163 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405163 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405163 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405163_sample_table.txt norm GSM1405163_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 AllPrep 0 UC_0615_1 M05 C2 520299 bladder tumor EFO EFO_0000294 0 MS2a.1 S05 1 3 3 T2 GSM1405162 1 Input DNA Bladder tumor UC_0414_1 male EFO EFO_0001266 AllPrep 1 UC_0414_1 M07 A2 520299 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S12 0 2 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405162 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405162 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405162 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405162_sample_table.txt norm GSM1405162_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 AllPrep 1 UC_0414_1 M07 A2 520299 bladder tumor EFO EFO_0000294 0 MS1a S12 0 2 1 Ta GSM1405162 2 MeDIP DNA Bladder tumor UC_0414_1 male EFO EFO_0001266 AllPrep 1 UC_0414_1 M07 A2 520299 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS1a S12 0 2 1 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405162 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405162 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405162 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405162_sample_table.txt norm GSM1405162_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 AllPrep 1 UC_0414_1 M07 A2 520299 bladder tumor EFO EFO_0000294 0 MS1a S12 0 2 1 Ta GSM1405161 2 MeDIP DNA Bladder tumor UC_0582_1 female EFO EFO_0001265 AllPrep 0 UC_0582_1 M11 A2 520292 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S13 0 1 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405161 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405161 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405161 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405161_sample_table.txt norm GSM1405161_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip female EFO EFO_0001265 AllPrep 0 UC_0582_1 M11 A2 520292 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S13 0 1 3 T1 GSM1405161 1 Input DNA Bladder tumor UC_0582_1 female EFO EFO_0001265 AllPrep 0 UC_0582_1 M11 A2 520292 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S13 0 1 3 T1 P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405161 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405161 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405161 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405161_sample_table.txt norm GSM1405161_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip female EFO EFO_0001265 AllPrep 0 UC_0582_1 M11 A2 520292 bladder tumor EFO EFO_0000294 0 MS2b.2.1 S13 0 1 3 T1 GSM1405160 2 MeDIP DNA Bladder tumor UC_0544_1 male EFO EFO_0001266 DNeasy 1 UC_0544_1 M09 B 520292 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1b S16 1 3 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-6 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405160 extract 2 genomic DNA P-GSE58256-5 ArrayExpress GSM1405160 LE 2 Cy3 P-GSE58256-7 ArrayExpress GSM1405160 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405160_sample_table.txt norm GSM1405160_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 DNeasy 1 UC_0544_1 M09 B 520292 bladder tumor EFO EFO_0000294 1 MS1b S16 1 3 2 Ta GSM1405160 1 Input DNA Bladder tumor UC_0544_1 male EFO EFO_0001266 DNeasy 1 UC_0544_1 M09 B 520292 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 bladder tumor EFO EFO_0000294 1 MS1b S16 1 3 2 Ta P-GSE58256-3 ArrayExpress P-GSE58256-2 ArrayExpress P-GSE58256-4 ArrayExpress GSM1405160 extract 1 genomic DNA P-GSE58256-5 ArrayExpress GSM1405160 LE 1 Cy5 P-GSE58256-7 ArrayExpress GSM1405160 A-GEOD-17148 ArrayExpress array assay P-GSE58256-8 ArrayExpress P-GSE58256-1 ArrayExpress GSM1405160_sample_table.txt norm GSM1405160_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-58256/E-GEOD-58256.processed.5.zip male EFO EFO_0001266 DNeasy 1 UC_0544_1 M09 B 520292 bladder tumor EFO EFO_0000294 1 MS1b S16 1 3 2 Ta