Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell line]	Characteristics [colony morphology]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [tumor line]	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [CELL LINE]	FactorValue [COLONY MORPHOLOGY]
GSM1372803 2	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 2E7 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_4.txt POOL B: H460 Holoclone 2E7 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_4.txt	H460 Holoclone 2E7 (pool A)	Holoclone_H460/2E7_vs_H460	H460/2E7 tumor	Holoclone	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	P-GSE57000-5	ArrayExpress	GSM1372803 extract 2	total RNA	P-GSE57000-6	ArrayExpress	GSM1372803 LE 2	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372803	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372803_02172012_252665214387_S01_GE2_107_Sep09_1_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-4	ArrayExpress	GSM1372803_sample_table.txt norm	GSM1372803_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	H460/2E7 tumor	Holoclone
GSM1372803 2	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 2E7 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_4.txt POOL B: H460 Holoclone 2E7 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_4.txt	H460 Holoclone 2E7 (pool A)	Holoclone_H460/2E7_vs_H460	H460/2E7 tumor	Holoclone	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	P-GSE57000-5	ArrayExpress	GSM1372803 extract 2	total RNA	P-GSE57000-6	ArrayExpress	GSM1372803 LE 2	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372803	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372803_02172012_252665214386_S01_GE2_107_Sep09_1_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-4	ArrayExpress	GSM1372803_sample_table.txt norm	GSM1372803_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	H460/2E7 tumor	Holoclone
GSM1372803 1	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 2E7 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_4.txt POOL B: H460 Holoclone 2E7 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_4.txt	H460 parental (pool A)	Holoclone_H460/2E7_vs_H460	  	Mixed	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	H460 parental tumor	P-GSE57000-5	ArrayExpress	GSM1372803 extract 1	total RNA	P-GSE57000-6	ArrayExpress	GSM1372803 LE 1	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372803	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372803_02172012_252665214387_S01_GE2_107_Sep09_1_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-4	ArrayExpress	GSM1372803_sample_table.txt norm	GSM1372803_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	not specified	Mixed
GSM1372803 1	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 2E7 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_4.txt POOL B: H460 Holoclone 2E7 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_4.txt	H460 parental (pool A)	Holoclone_H460/2E7_vs_H460	  	Mixed	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	H460 parental tumor	P-GSE57000-5	ArrayExpress	GSM1372803 extract 1	total RNA	P-GSE57000-6	ArrayExpress	GSM1372803 LE 1	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372803	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372803_02172012_252665214386_S01_GE2_107_Sep09_1_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-4	ArrayExpress	GSM1372803_sample_table.txt norm	GSM1372803_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	not specified	Mixed
GSM1372802 1	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 3F1 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_3.txt POOL B: H460 Holoclone 3F1 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_3.txt	H460 parental (pool A)	Holoclone_H460/3F1_vs_H460	  	Mixed	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	H460 parental tumor	P-GSE57000-5	ArrayExpress	GSM1372802 extract 1	total RNA	P-GSE57000-6	ArrayExpress	GSM1372802 LE 1	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372802	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372802_02172012_252665214387_S01_GE2_107_Sep09_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-3	ArrayExpress	GSM1372802_sample_table.txt norm	GSM1372802_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	not specified	Mixed
GSM1372802 1	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 3F1 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_3.txt POOL B: H460 Holoclone 3F1 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_3.txt	H460 parental (pool A)	Holoclone_H460/3F1_vs_H460	  	Mixed	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	H460 parental tumor	P-GSE57000-5	ArrayExpress	GSM1372802 extract 1	total RNA	P-GSE57000-6	ArrayExpress	GSM1372802 LE 1	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372802	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372802_02172012_252665214386_S01_GE2_107_Sep09_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-3	ArrayExpress	GSM1372802_sample_table.txt norm	GSM1372802_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	not specified	Mixed
GSM1372802 2	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 3F1 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_3.txt POOL B: H460 Holoclone 3F1 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_3.txt	H460 Holoclone 3F1 (pool A)	Holoclone_H460/3F1_vs_H460	H460/3F1 tumor	Holoclone	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	P-GSE57000-5	ArrayExpress	GSM1372802 extract 2	total RNA	P-GSE57000-6	ArrayExpress	GSM1372802 LE 2	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372802	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372802_02172012_252665214387_S01_GE2_107_Sep09_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-3	ArrayExpress	GSM1372802_sample_table.txt norm	GSM1372802_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	H460/3F1 tumor	Holoclone
GSM1372802 2	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 3F1 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_3.txt POOL B: H460 Holoclone 3F1 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_3.txt	H460 Holoclone 3F1 (pool A)	Holoclone_H460/3F1_vs_H460	H460/3F1 tumor	Holoclone	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	P-GSE57000-5	ArrayExpress	GSM1372802 extract 2	total RNA	P-GSE57000-6	ArrayExpress	GSM1372802 LE 2	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372802	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372802_02172012_252665214386_S01_GE2_107_Sep09_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-3	ArrayExpress	GSM1372802_sample_table.txt norm	GSM1372802_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	H460/3F1 tumor	Holoclone
GSM1372801 2	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 2H3 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_2.txt POOL B: H460 Holoclone 2H3 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_2.txt	H460 Holoclone 2H3 (pool A)	Holoclone_H460/2H3_vs_H460	H460/2H3 tumor	Mixed	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	P-GSE57000-5	ArrayExpress	GSM1372801 extract 2	total RNA	P-GSE57000-6	ArrayExpress	GSM1372801 LE 2	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372801	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372801_02172012_252665214387_S01_GE2_107_Sep09_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-2	ArrayExpress	GSM1372801_sample_table.txt norm	GSM1372801_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	H460/2H3 tumor	Mixed
GSM1372801 2	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 2H3 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_2.txt POOL B: H460 Holoclone 2H3 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_2.txt	H460 Holoclone 2H3 (pool A)	Holoclone_H460/2H3_vs_H460	H460/2H3 tumor	Mixed	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	P-GSE57000-5	ArrayExpress	GSM1372801 extract 2	total RNA	P-GSE57000-6	ArrayExpress	GSM1372801 LE 2	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372801	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372801_02172012_252665214386_S01_GE2_107_Sep09_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-2	ArrayExpress	GSM1372801_sample_table.txt norm	GSM1372801_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	H460/2H3 tumor	Mixed
GSM1372801 1	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 2H3 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_2.txt POOL B: H460 Holoclone 2H3 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_2.txt	H460 parental (pool A)	Holoclone_H460/2H3_vs_H460	  	Mixed	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	H460 parental tumor	P-GSE57000-5	ArrayExpress	GSM1372801 extract 1	total RNA	P-GSE57000-6	ArrayExpress	GSM1372801 LE 1	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372801	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372801_02172012_252665214387_S01_GE2_107_Sep09_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-2	ArrayExpress	GSM1372801_sample_table.txt norm	GSM1372801_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	not specified	Mixed
GSM1372801 1	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 2H3 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_2.txt POOL B: H460 Holoclone 2H3 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_2.txt	H460 parental (pool A)	Holoclone_H460/2H3_vs_H460	  	Mixed	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	H460 parental tumor	P-GSE57000-5	ArrayExpress	GSM1372801 extract 1	total RNA	P-GSE57000-6	ArrayExpress	GSM1372801 LE 1	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372801	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372801_02172012_252665214386_S01_GE2_107_Sep09_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-2	ArrayExpress	GSM1372801_sample_table.txt norm	GSM1372801_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	not specified	Mixed
GSM1372800 1	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 2E1 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_1.txt POOL B: H460 Holoclone 2E1 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_1.txt	H460 parental (pool A)	Holoclone_H460/2E1_vs_H460	  	Mixed	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	H460 parental tumor	P-GSE57000-5	ArrayExpress	GSM1372800 extract 1	total RNA	P-GSE57000-6	ArrayExpress	GSM1372800 LE 1	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372800	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372800_02172012_252665214387_S01_GE2_107_Sep09_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-1	ArrayExpress	GSM1372800_sample_table.txt norm	GSM1372800_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	not specified	Mixed
GSM1372800 1	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 2E1 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_1.txt POOL B: H460 Holoclone 2E1 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_1.txt	H460 parental (pool A)	Holoclone_H460/2E1_vs_H460	  	Mixed	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	H460 parental tumor	P-GSE57000-5	ArrayExpress	GSM1372800 extract 1	total RNA	P-GSE57000-6	ArrayExpress	GSM1372800 LE 1	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372800	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372800_02172012_252665214386_S01_GE2_107_Sep09_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-1	ArrayExpress	GSM1372800_sample_table.txt norm	GSM1372800_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	not specified	Mixed
GSM1372800 2	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 2E1 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_1.txt POOL B: H460 Holoclone 2E1 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_1.txt	H460 Holoclone 2E1 (pool A)	Holoclone_H460/2E1_vs_H460	H460/2E1 tumor	Holoclone	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	P-GSE57000-5	ArrayExpress	GSM1372800 extract 2	total RNA	P-GSE57000-6	ArrayExpress	GSM1372800 LE 2	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372800	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372800_02172012_252665214387_S01_GE2_107_Sep09_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-1	ArrayExpress	GSM1372800_sample_table.txt norm	GSM1372800_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	H460/2E1 tumor	Holoclone
GSM1372800 2	Total RNA was prepared from each set of tumors, either parental H460-derived or H460 holoclone (tumor stem-like cell)-derived, as indicated. Dye-swap design (POOL A, POOL B) POOL A: H460 parental (Alexa 555)_vs_H460 Holoclone 2E1 (Alexa 647) Raw file = 02172012_252665214386_S01_GE2_107_Sep09_1_1.txt POOL B: H460 Holoclone 2E1 (Alexa 555)_vs_H460 parental (Alexa 647) Raw file = 02172012_252665214387_S01_GE2_107_Sep09_1_1.txt	H460 Holoclone 2E1 (pool A)	Holoclone_H460/2E1_vs_H460	H460/2E1 tumor	Holoclone	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	P-GSE57000-5	ArrayExpress	GSM1372800 extract 2	total RNA	P-GSE57000-6	ArrayExpress	GSM1372800 LE 2	Alexa 555, Alexa 647	P-GSE57000-7	ArrayExpress	GSM1372800	A-GEOD-13497	ArrayExpress	array assay	P-GSE57000-8	ArrayExpress	GSM1372800_02172012_252665214386_S01_GE2_107_Sep09_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.raw.1.zip	P-GSE57000-1	ArrayExpress	GSM1372800_sample_table.txt norm	GSM1372800_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-57000/E-GEOD-57000.processed.1.zip	H460/2E1 tumor	Holoclone