Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [age]	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Characteristics [sex]	Term Source REF	Term Accession Number	Characteristics [strain]	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [GENOTYPE]	FactorValue [ORGANISM PART]	FactorValue [STRAIN]
GSM1361973 1	Biological replicate 3 of 3. Prostate cancer epithelial cells	MGS	Pten Null Cancer Cells, Biological Replicate 3	  	  	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	reference pool of normal adult tissues (10% prostate and 30% each testis, liver, and kidney)	male	EFO	EFO_0001266	Swiss-Webster	P-GSE56469-2	ArrayExpress	GSM1361973 extract 1	total RNA	P-GSE56469-3	ArrayExpress	GSM1361973 LE 1	Cy5	P-GSE56469-4	ArrayExpress	GSM1361973	A-GEOD-10361	ArrayExpress	array assay	P-GSE56469-5	ArrayExpress	GSM1361973_US45102975_251657910039_S01_GE2-v5_95_Feb07_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.raw.1.zip	P-GSE56469-1	ArrayExpress	GSM1361973_sample_table.txt norm	GSM1361973_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.processed.1.zip	not specified	reference pool of normal adult tissues (10% prostate and 30% each testis, liver, and kidney)	Swiss-Webster
GSM1361973 2	Biological replicate 3 of 3. Prostate cancer epithelial cells	Pten null cancer cells	Pten Null Cancer Cells, Biological Replicate 3	28-30 weeks	Pb-Cre+;PtenL/L	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	tumor prostate tissue at anterior lobe	male	EFO	EFO_0001266	mixed background	P-GSE56469-2	ArrayExpress	GSM1361973 extract 2	total RNA	P-GSE56469-3	ArrayExpress	GSM1361973 LE 2	Cy3	P-GSE56469-4	ArrayExpress	GSM1361973	A-GEOD-10361	ArrayExpress	array assay	P-GSE56469-5	ArrayExpress	GSM1361973_US45102975_251657910039_S01_GE2-v5_95_Feb07_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.raw.1.zip	P-GSE56469-1	ArrayExpress	GSM1361973_sample_table.txt norm	GSM1361973_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.processed.1.zip	Pb-Cre+;PtenL/L	tumor prostate tissue at anterior lobe	mixed background
GSM1361972 2	Biological replicate 2 of 3. Prostate cancer epithelial cells	Pten null cancer cells	Pten Null Cancer Cells, Biological Replicate 2	28-30 weeks	Pb-Cre+;PtenL/L	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	tumor prostate tissue at anterior lobe	male	EFO	EFO_0001266	mixed background	P-GSE56469-2	ArrayExpress	GSM1361972 extract 2	total RNA	P-GSE56469-3	ArrayExpress	GSM1361972 LE 2	Cy3	P-GSE56469-4	ArrayExpress	GSM1361972	A-GEOD-10361	ArrayExpress	array assay	P-GSE56469-5	ArrayExpress	GSM1361972_US45102975_251657910038_S01_GE2-v5_95_Feb07_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.raw.1.zip	P-GSE56469-1	ArrayExpress	GSM1361972_sample_table.txt norm	GSM1361972_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.processed.1.zip	Pb-Cre+;PtenL/L	tumor prostate tissue at anterior lobe	mixed background
GSM1361972 1	Biological replicate 2 of 3. Prostate cancer epithelial cells	MGS	Pten Null Cancer Cells, Biological Replicate 2	  	  	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	reference pool of normal adult tissues (10% prostate and 30% each testis, liver, and kidney)	male	EFO	EFO_0001266	Swiss-Webster	P-GSE56469-2	ArrayExpress	GSM1361972 extract 1	total RNA	P-GSE56469-3	ArrayExpress	GSM1361972 LE 1	Cy5	P-GSE56469-4	ArrayExpress	GSM1361972	A-GEOD-10361	ArrayExpress	array assay	P-GSE56469-5	ArrayExpress	GSM1361972_US45102975_251657910038_S01_GE2-v5_95_Feb07_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.raw.1.zip	P-GSE56469-1	ArrayExpress	GSM1361972_sample_table.txt norm	GSM1361972_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.processed.1.zip	not specified	reference pool of normal adult tissues (10% prostate and 30% each testis, liver, and kidney)	Swiss-Webster
GSM1361971 2	Biological replicate 1 of 3. Prostate cancer epithelial cells	Pten null cancer cells	Pten Null Cancer Cells, Biological Replicate 1	28-30 weeks	Pb-Cre+;PtenL/L	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	tumor prostate tissue at anterior lobe	male	EFO	EFO_0001266	mixed background	P-GSE56469-2	ArrayExpress	GSM1361971 extract 2	total RNA	P-GSE56469-3	ArrayExpress	GSM1361971 LE 2	Cy3	P-GSE56469-4	ArrayExpress	GSM1361971	A-GEOD-10361	ArrayExpress	array assay	P-GSE56469-5	ArrayExpress	GSM1361971_US45102975_251657910037_S01_GE2-v5_95_Feb07_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.raw.1.zip	P-GSE56469-1	ArrayExpress	GSM1361971_sample_table.txt norm	GSM1361971_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.processed.1.zip	Pb-Cre+;PtenL/L	tumor prostate tissue at anterior lobe	mixed background
GSM1361971 1	Biological replicate 1 of 3. Prostate cancer epithelial cells	MGS	Pten Null Cancer Cells, Biological Replicate 1	  	  	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	reference pool of normal adult tissues (10% prostate and 30% each testis, liver, and kidney)	male	EFO	EFO_0001266	Swiss-Webster	P-GSE56469-2	ArrayExpress	GSM1361971 extract 1	total RNA	P-GSE56469-3	ArrayExpress	GSM1361971 LE 1	Cy5	P-GSE56469-4	ArrayExpress	GSM1361971	A-GEOD-10361	ArrayExpress	array assay	P-GSE56469-5	ArrayExpress	GSM1361971_US45102975_251657910037_S01_GE2-v5_95_Feb07_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.raw.1.zip	P-GSE56469-1	ArrayExpress	GSM1361971_sample_table.txt norm	GSM1361971_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.processed.1.zip	not specified	reference pool of normal adult tissues (10% prostate and 30% each testis, liver, and kidney)	Swiss-Webster
GSM1361970 1	Biological replicate 3 of 3.  Control benign prostate epithelial cells	MGS	Benign Prostatic Epithelial Cells, Biological Replicate 3	  	  	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	reference pool of normal adult tissues (10% prostate and 30% each testis, liver, and kidney)	male	EFO	EFO_0001266	Swiss-Webster	P-GSE56469-2	ArrayExpress	GSM1361970 extract 1	total RNA	P-GSE56469-3	ArrayExpress	GSM1361970 LE 1	Cy5	P-GSE56469-4	ArrayExpress	GSM1361970	A-GEOD-10361	ArrayExpress	array assay	P-GSE56469-5	ArrayExpress	GSM1361970_US45102975_251657910042_S01_GE2-v5_95_Feb07_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.raw.1.zip	P-GSE56469-1	ArrayExpress	GSM1361970_sample_table.txt norm	GSM1361970_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.processed.1.zip	not specified	reference pool of normal adult tissues (10% prostate and 30% each testis, liver, and kidney)	Swiss-Webster
GSM1361970 2	Biological replicate 3 of 3.  Control benign prostate epithelial cells	Benign epithelial cells	Benign Prostatic Epithelial Cells, Biological Replicate 3	28-30 weeks	Pb-Cre-;PtenL/L	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	benign prostate tissue at anterior lobe	male	EFO	EFO_0001266	mixed background	P-GSE56469-2	ArrayExpress	GSM1361970 extract 2	total RNA	P-GSE56469-3	ArrayExpress	GSM1361970 LE 2	Cy3	P-GSE56469-4	ArrayExpress	GSM1361970	A-GEOD-10361	ArrayExpress	array assay	P-GSE56469-5	ArrayExpress	GSM1361970_US45102975_251657910042_S01_GE2-v5_95_Feb07_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.raw.1.zip	P-GSE56469-1	ArrayExpress	GSM1361970_sample_table.txt norm	GSM1361970_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.processed.1.zip	Pb-Cre-;PtenL/L	benign prostate tissue at anterior lobe	mixed background
GSM1361969 1	Biological replicate 2 of 3.  Control benign prostate epithelial cells	MGS	Benign Prostatic Epithelial Cells, Biological Replicate 2	  	  	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	reference pool of normal adult tissues (10% prostate and 30% each testis, liver, and kidney)	male	EFO	EFO_0001266	Swiss-Webster	P-GSE56469-2	ArrayExpress	GSM1361969 extract 1	total RNA	P-GSE56469-3	ArrayExpress	GSM1361969 LE 1	Cy5	P-GSE56469-4	ArrayExpress	GSM1361969	A-GEOD-10361	ArrayExpress	array assay	P-GSE56469-5	ArrayExpress	GSM1361969_US45102975_251657910041_S01_GE2-v5_95_Feb07_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.raw.1.zip	P-GSE56469-1	ArrayExpress	GSM1361969_sample_table.txt norm	GSM1361969_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.processed.1.zip	not specified	reference pool of normal adult tissues (10% prostate and 30% each testis, liver, and kidney)	Swiss-Webster
GSM1361969 2	Biological replicate 2 of 3.  Control benign prostate epithelial cells	Benign epithelial cells	Benign Prostatic Epithelial Cells, Biological Replicate 2	28-30 weeks	Pb-Cre-;PtenL/L	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	benign prostate tissue at anterior lobe	male	EFO	EFO_0001266	mixed background	P-GSE56469-2	ArrayExpress	GSM1361969 extract 2	total RNA	P-GSE56469-3	ArrayExpress	GSM1361969 LE 2	Cy3	P-GSE56469-4	ArrayExpress	GSM1361969	A-GEOD-10361	ArrayExpress	array assay	P-GSE56469-5	ArrayExpress	GSM1361969_US45102975_251657910041_S01_GE2-v5_95_Feb07_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.raw.1.zip	P-GSE56469-1	ArrayExpress	GSM1361969_sample_table.txt norm	GSM1361969_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.processed.1.zip	Pb-Cre-;PtenL/L	benign prostate tissue at anterior lobe	mixed background
GSM1361968 2	Biological replicate 1 of 3.  Control benign prostate epithelial cells	Benign epithelial cells	Benign Prostatic Epithelial Cells, Biological Replicate 1	28-30 weeks	Pb-Cre-;PtenL/L	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	benign prostate tissue at anterior lobe	male	EFO	EFO_0001266	mixed background	P-GSE56469-2	ArrayExpress	GSM1361968 extract 2	total RNA	P-GSE56469-3	ArrayExpress	GSM1361968 LE 2	Cy3	P-GSE56469-4	ArrayExpress	GSM1361968	A-GEOD-10361	ArrayExpress	array assay	P-GSE56469-5	ArrayExpress	GSM1361968_US45102975_251657910038_S01_GE2-v5_95_Feb07_1_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.raw.1.zip	P-GSE56469-1	ArrayExpress	GSM1361968_sample_table.txt norm	GSM1361968_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.processed.1.zip	Pb-Cre-;PtenL/L	benign prostate tissue at anterior lobe	mixed background
GSM1361968 1	Biological replicate 1 of 3.  Control benign prostate epithelial cells	MGS	Benign Prostatic Epithelial Cells, Biological Replicate 1	  	  	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	reference pool of normal adult tissues (10% prostate and 30% each testis, liver, and kidney)	male	EFO	EFO_0001266	Swiss-Webster	P-GSE56469-2	ArrayExpress	GSM1361968 extract 1	total RNA	P-GSE56469-3	ArrayExpress	GSM1361968 LE 1	Cy5	P-GSE56469-4	ArrayExpress	GSM1361968	A-GEOD-10361	ArrayExpress	array assay	P-GSE56469-5	ArrayExpress	GSM1361968_US45102975_251657910038_S01_GE2-v5_95_Feb07_1_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.raw.1.zip	P-GSE56469-1	ArrayExpress	GSM1361968_sample_table.txt norm	GSM1361968_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56469/E-GEOD-56469.processed.1.zip	not specified	reference pool of normal adult tissues (10% prostate and 30% each testis, liver, and kidney)	Swiss-Webster