Source Name	Material Type	Characteristics [cell line]	Characteristics [cell type]	Characteristics [RNA interference]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [passage]	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [RNA interference]
GSM1354788 1	cell	MDA-MB-231	invasive breast cancer cell	shATAD3A for ATAD3A knockdown	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	passage 2, puromycin resistant	mRNA expression levels between the ATAD3A knockdown and control cells. shATAD3A-3	MDA-MB-231 ATAD3A knockdown cells	ATAD3A knockdown-rep 3	P-GSE56084-2	ArrayExpress	P-GSE56084-3	ArrayExpress	P-GSE56084-4	ArrayExpress	GSM1354788 extract 1	total RNA	P-GSE56084-5	ArrayExpress	GSM1354788 LE 1	biotin	P-GSE56084-6	ArrayExpress	GSM1354788	A-AFFY-44	ArrayExpress	array assay	P-GSE56084-7	ArrayExpress	GSM1354788_3Akd3_HG_U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56084/E-GEOD-56084.raw.1.zip	P-GSE56084-1	ArrayExpress	GSM1354788_sample_table.txt norm	GSM1354788_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56084/E-GEOD-56084.processed.1.zip	shATAD3A for ATAD3A knockdown
GSM1354787 1	cell	MDA-MB-231	invasive breast cancer cell	shATAD3A for ATAD3A knockdown	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	passage 2, puromycin resistant	mRNA expression levels between the ATAD3A knockdown and control cells. shATAD3A-2	MDA-MB-231 ATAD3A knockdown cells	ATAD3A knockdown-rep 2	P-GSE56084-2	ArrayExpress	P-GSE56084-3	ArrayExpress	P-GSE56084-4	ArrayExpress	GSM1354787 extract 1	total RNA	P-GSE56084-5	ArrayExpress	GSM1354787 LE 1	biotin	P-GSE56084-6	ArrayExpress	GSM1354787	A-AFFY-44	ArrayExpress	array assay	P-GSE56084-7	ArrayExpress	GSM1354787_3Akd2_HG_U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56084/E-GEOD-56084.raw.1.zip	P-GSE56084-1	ArrayExpress	GSM1354787_sample_table.txt norm	GSM1354787_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56084/E-GEOD-56084.processed.1.zip	shATAD3A for ATAD3A knockdown
GSM1354786 1	cell	MDA-MB-231	invasive breast cancer cell	shATAD3A for ATAD3A knockdown	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	passage 2, puromycin resistant	mRNA expression levels between the ATAD3A knockdown and control cells. shATAD3A-1	MDA-MB-231 ATAD3A knockdown cells	ATAD3A knockdown-rep 1	P-GSE56084-2	ArrayExpress	P-GSE56084-3	ArrayExpress	P-GSE56084-4	ArrayExpress	GSM1354786 extract 1	total RNA	P-GSE56084-5	ArrayExpress	GSM1354786 LE 1	biotin	P-GSE56084-6	ArrayExpress	GSM1354786	A-AFFY-44	ArrayExpress	array assay	P-GSE56084-7	ArrayExpress	GSM1354786_3Akd1_HG_U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56084/E-GEOD-56084.raw.1.zip	P-GSE56084-1	ArrayExpress	GSM1354786_sample_table.txt norm	GSM1354786_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56084/E-GEOD-56084.processed.1.zip	shATAD3A for ATAD3A knockdown
GSM1354785 1	cell	MDA-MB-231	invasive breast cancer cell	shGFP control	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	passage 2, puromycin resistant	mRNA expression levels between the ATAD3A knockdown and control cells. shGFP-3	MDA-MB-231 knockdown control cells	knockdown control-rep 3	P-GSE56084-2	ArrayExpress	P-GSE56084-3	ArrayExpress	P-GSE56084-4	ArrayExpress	GSM1354785 extract 1	total RNA	P-GSE56084-5	ArrayExpress	GSM1354785 LE 1	biotin	P-GSE56084-6	ArrayExpress	GSM1354785	A-AFFY-44	ArrayExpress	array assay	P-GSE56084-7	ArrayExpress	GSM1354785_ctrl3_HG_U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56084/E-GEOD-56084.raw.1.zip	P-GSE56084-1	ArrayExpress	GSM1354785_sample_table.txt norm	GSM1354785_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56084/E-GEOD-56084.processed.1.zip	control
GSM1354784 1	cell	MDA-MB-231	invasive breast cancer cell	shGFP control	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	passage 2, puromycin resistant	mRNA expression levels between the ATAD3A knockdown and control cells. shGFP-2	MDA-MB-231 knockdown control cells	knockdown control-rep 2	P-GSE56084-2	ArrayExpress	P-GSE56084-3	ArrayExpress	P-GSE56084-4	ArrayExpress	GSM1354784 extract 1	total RNA	P-GSE56084-5	ArrayExpress	GSM1354784 LE 1	biotin	P-GSE56084-6	ArrayExpress	GSM1354784	A-AFFY-44	ArrayExpress	array assay	P-GSE56084-7	ArrayExpress	GSM1354784_ctrl2_HG_U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56084/E-GEOD-56084.raw.1.zip	P-GSE56084-1	ArrayExpress	GSM1354784_sample_table.txt norm	GSM1354784_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56084/E-GEOD-56084.processed.1.zip	control
GSM1354783 1	cell	MDA-MB-231	invasive breast cancer cell	shGFP control	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	passage 2, puromycin resistant	mRNA expression levels between the ATAD3A knockdown and control cells. shGFP-1	MDA-MB-231 knockdown control cells	knockdown control-rep 1	P-GSE56084-2	ArrayExpress	P-GSE56084-3	ArrayExpress	P-GSE56084-4	ArrayExpress	GSM1354783 extract 1	total RNA	P-GSE56084-5	ArrayExpress	GSM1354783 LE 1	biotin	P-GSE56084-6	ArrayExpress	GSM1354783	A-AFFY-44	ArrayExpress	array assay	P-GSE56084-7	ArrayExpress	GSM1354783_ctrl1_HG_U133_Plus_2_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56084/E-GEOD-56084.raw.1.zip	P-GSE56084-1	ArrayExpress	GSM1354783_sample_table.txt norm	GSM1354783_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-56084/E-GEOD-56084.processed.1.zip	control