Source Name	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell line]	Characteristics [cell type]	Term Source REF	Term Accession Number	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [rip antibody]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [RIP ANTIBODY]
GSM1324163 1	control SMMC-7721	SMMC-7721_control_rep3	SMMC-7721	hepatocellular carcinoma	EFO	EFO_0000182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	P-GSE54800-7	ArrayExpress	  	  	GSM1324163 extract 1	total RNA	P-GSE54800-4	ArrayExpress	GSM1324163 LE 1	Cy5	P-GSE54800-8	ArrayExpress	  	  	GSM1324163	A-GEOD-16951	ArrayExpress	array assay	P-GSE54800-9	ArrayExpress	  	  	GSM1324163_control_rep3.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.raw.1.zip	P-GSE54800-2	ArrayExpress	  	  	GSM1324163_sample_table.txt norm	GSM1324163_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.processed.1.zip	not specified
GSM1324162 1	control SMMC-7721	SMMC-7721_control_rep2	SMMC-7721	hepatocellular carcinoma	EFO	EFO_0000182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	P-GSE54800-7	ArrayExpress	  	  	GSM1324162 extract 1	total RNA	P-GSE54800-4	ArrayExpress	GSM1324162 LE 1	Cy5	P-GSE54800-8	ArrayExpress	  	  	GSM1324162	A-GEOD-16951	ArrayExpress	array assay	P-GSE54800-9	ArrayExpress	  	  	GSM1324162_control_rep2.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.raw.1.zip	P-GSE54800-2	ArrayExpress	  	  	GSM1324162_sample_table.txt norm	GSM1324162_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.processed.1.zip	not specified
GSM1324161 1	control SMMC-7721	SMMC-7721_control_rep1	SMMC-7721	hepatocellular carcinoma	EFO	EFO_0000182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	P-GSE54800-7	ArrayExpress	  	  	GSM1324161 extract 1	total RNA	P-GSE54800-4	ArrayExpress	GSM1324161 LE 1	Cy5	P-GSE54800-8	ArrayExpress	  	  	GSM1324161	A-GEOD-16951	ArrayExpress	array assay	P-GSE54800-9	ArrayExpress	  	  	GSM1324161_control_rep1.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.raw.1.zip	P-GSE54800-2	ArrayExpress	  	  	GSM1324161_sample_table.txt norm	GSM1324161_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.processed.1.zip	not specified
GSM1324160 1	SMMC-7721 stably overexpress lncRNA-ATB	SMMC-7721_lncRNA-ATB_overexpression_rep3	SMMC-7721	hepatocellular carcinoma	EFO	EFO_0000182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	P-GSE54800-7	ArrayExpress	  	  	GSM1324160 extract 1	total RNA	P-GSE54800-4	ArrayExpress	GSM1324160 LE 1	Cy5	P-GSE54800-8	ArrayExpress	  	  	GSM1324160	A-GEOD-16951	ArrayExpress	array assay	P-GSE54800-9	ArrayExpress	  	  	GSM1324160_lncRNA-ATB_rep3.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.raw.1.zip	P-GSE54800-2	ArrayExpress	  	  	GSM1324160_sample_table.txt norm	GSM1324160_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.processed.1.zip	not specified
GSM1324159 1	SMMC-7721 stably overexpress lncRNA-ATB	SMMC-7721_lncRNA-ATB_overexpression_rep2	SMMC-7721	hepatocellular carcinoma	EFO	EFO_0000182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	P-GSE54800-7	ArrayExpress	  	  	GSM1324159 extract 1	total RNA	P-GSE54800-4	ArrayExpress	GSM1324159 LE 1	Cy5	P-GSE54800-8	ArrayExpress	  	  	GSM1324159	A-GEOD-16951	ArrayExpress	array assay	P-GSE54800-9	ArrayExpress	  	  	GSM1324159_lncRNA-ATB_rep2.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.raw.1.zip	P-GSE54800-2	ArrayExpress	  	  	GSM1324159_sample_table.txt norm	GSM1324159_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.processed.1.zip	not specified
GSM1324158 1	SMMC-7721 stably overexpress lncRNA-ATB	SMMC-7721_lncRNA-ATB_overexpression_rep1	SMMC-7721	hepatocellular carcinoma	EFO	EFO_0000182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	P-GSE54800-7	ArrayExpress	  	  	GSM1324158 extract 1	total RNA	P-GSE54800-4	ArrayExpress	GSM1324158 LE 1	Cy5	P-GSE54800-8	ArrayExpress	  	  	GSM1324158	A-GEOD-16951	ArrayExpress	array assay	P-GSE54800-9	ArrayExpress	  	  	GSM1324158_lncRNA-ATB_rep1.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.raw.1.zip	P-GSE54800-2	ArrayExpress	  	  	GSM1324158_sample_table.txt norm	GSM1324158_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.processed.1.zip	not specified
GSM1324157 1	SMMC-7721 continuously treated with 10 ng/ml of recombinant TGF-β1 for 21 days	TGF-β_treated_rep3	SMMC-7721	hepatocellular carcinoma	EFO	EFO_0000182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	  	  	P-GSE54800-3	ArrayExpress	GSM1324157 extract 1	total RNA	P-GSE54800-4	ArrayExpress	GSM1324157 LE 1	Cy3	  	  	P-GSE54800-5	ArrayExpress	GSM1324157	A-GEOD-15314	ArrayExpress	array assay	  	  	P-GSE54800-6	ArrayExpress	GSM1324157_treated_rep3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.raw.1.zip	  	  	P-GSE54800-1	ArrayExpress	GSM1324157_sample_table.txt norm	GSM1324157_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.processed.1.zip	not specified
GSM1324156 1	SMMC-7721 continuously treated with 10 ng/ml of recombinant TGF-β1 for 21 days	TGF-β_treated_rep2	SMMC-7721	hepatocellular carcinoma	EFO	EFO_0000182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	  	  	P-GSE54800-3	ArrayExpress	GSM1324156 extract 1	total RNA	P-GSE54800-4	ArrayExpress	GSM1324156 LE 1	Cy3	  	  	P-GSE54800-5	ArrayExpress	GSM1324156	A-GEOD-15314	ArrayExpress	array assay	  	  	P-GSE54800-6	ArrayExpress	GSM1324156_treated_rep2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.raw.1.zip	  	  	P-GSE54800-1	ArrayExpress	GSM1324156_sample_table.txt norm	GSM1324156_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.processed.1.zip	not specified
GSM1324155 1	SMMC-7721 continuously treated with 10 ng/ml of recombinant TGF-β1 for 21 days	TGF-β_treated_rep1	SMMC-7721	hepatocellular carcinoma	EFO	EFO_0000182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	  	  	P-GSE54800-3	ArrayExpress	GSM1324155 extract 1	total RNA	P-GSE54800-4	ArrayExpress	GSM1324155 LE 1	Cy3	  	  	P-GSE54800-5	ArrayExpress	GSM1324155	A-GEOD-15314	ArrayExpress	array assay	  	  	P-GSE54800-6	ArrayExpress	GSM1324155_treated_rep1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.raw.1.zip	  	  	P-GSE54800-1	ArrayExpress	GSM1324155_sample_table.txt norm	GSM1324155_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.processed.1.zip	not specified
GSM1324154 1	control SMMC-7721	TGF-β_untreated_rep3	SMMC-7721	hepatocellular carcinoma	EFO	EFO_0000182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	  	  	P-GSE54800-3	ArrayExpress	GSM1324154 extract 1	total RNA	P-GSE54800-4	ArrayExpress	GSM1324154 LE 1	Cy3	  	  	P-GSE54800-5	ArrayExpress	GSM1324154	A-GEOD-15314	ArrayExpress	array assay	  	  	P-GSE54800-6	ArrayExpress	GSM1324154_un_rep3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.raw.1.zip	  	  	P-GSE54800-1	ArrayExpress	GSM1324154_sample_table.txt norm	GSM1324154_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.processed.1.zip	not specified
GSM1324153 1	control SMMC-7721	TGF-β_untreated_rep2	SMMC-7721	hepatocellular carcinoma	EFO	EFO_0000182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	  	  	P-GSE54800-3	ArrayExpress	GSM1324153 extract 1	total RNA	P-GSE54800-4	ArrayExpress	GSM1324153 LE 1	Cy3	  	  	P-GSE54800-5	ArrayExpress	GSM1324153	A-GEOD-15314	ArrayExpress	array assay	  	  	P-GSE54800-6	ArrayExpress	GSM1324153_un_rep2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.raw.1.zip	  	  	P-GSE54800-1	ArrayExpress	GSM1324153_sample_table.txt norm	GSM1324153_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.processed.1.zip	not specified
GSM1324152 1	control SMMC-7721	TGF-β_untreated_rep1	SMMC-7721	hepatocellular carcinoma	EFO	EFO_0000182	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	  	  	P-GSE54800-3	ArrayExpress	GSM1324152 extract 1	total RNA	P-GSE54800-4	ArrayExpress	GSM1324152 LE 1	Cy3	  	  	P-GSE54800-5	ArrayExpress	GSM1324152	A-GEOD-15314	ArrayExpress	array assay	  	  	P-GSE54800-6	ArrayExpress	GSM1324152_un_rep1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.raw.1.zip	  	  	P-GSE54800-1	ArrayExpress	GSM1324152_sample_table.txt norm	GSM1324152_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-54800/E-GEOD-54800.processed.1.zip	not specified