Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell type]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Term Source REF	Term Accession Number	Characteristics [strain]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	Factor Value [compound_1] 	Factor Value [dose_1] 	Unit[concentration unit]	Factor Value [compound_2] 	Factor Value [dose_2] 	Unit[concentration unit]
GSM1304851 1	Gene expression data from bone marrow derived macrophages treated with IFNg and LPS	"Bone marrow derived macrophages, treated with IFNg and LPS"	"BMDM, IFNg+LPS, 4"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304851 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304851 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304851	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304851_39161_BM_IFNg+LPS_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304851_sample_table.txt norm	GSM1304851_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	interferon gamma	10	nanogram per milliliter	lipopolysaccharide	10	nanogram per milliliter
GSM1304850 1	Gene expression data from bone marrow derived macrophages treated with IFNg and LPS	"Bone marrow derived macrophages, treated with IFNg and LPS"	"BMDM, IFNg+LPS, 3"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304850 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304850 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304850	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304850_39160_BM_IFNg+LPS_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304850_sample_table.txt norm	GSM1304850_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	interferon gamma	10	nanogram per milliliter	lipopolysaccharide	10	nanogram per milliliter
GSM1304849 1	Gene expression data from bone marrow derived macrophages treated with IFNg and LPS	"Bone marrow derived macrophages, treated with IFNg and LPS"	"BMDM, IFNg+LPS, 2"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304849 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304849 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304849	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304849_39159_BM_IFNg+LPS_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304849_sample_table.txt norm	GSM1304849_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	interferon gamma	10	nanogram per milliliter	lipopolysaccharide	10	nanogram per milliliter
GSM1304848 1	Gene expression data from bone marrow derived macrophages treated with IFNg and LPS	"Bone marrow derived macrophages, treated with IFNg and LPS"	"BMDM, IFNg+LPS, 1"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304848 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304848 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304848	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304848_39158_BM_IFNg+LPS_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304848_sample_table.txt norm	GSM1304848_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	interferon gamma	10	nanogram per milliliter	lipopolysaccharide	10	nanogram per milliliter
GSM1304847 1	Gene expression data from bone marrow derived macrophages treated with LPS	"Bone marrow derived macrophages, treated with LPS"	"BMDM, LPS, 4"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304847 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304847 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304847	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304847_39153_BM_LPS_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304847_sample_table.txt norm	GSM1304847_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	lipopolysaccharide	10	nanogram per milliliter	none	  	        
GSM1304846 1	Gene expression data from bone marrow derived macrophages treated with LPS	"Bone marrow derived macrophages, treated with LPS"	"BMDM, LPS, 3"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304846 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304846 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304846	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304846_39152_BM_LPS_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304846_sample_table.txt norm	GSM1304846_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	lipopolysaccharide	10	nanogram per milliliter	none	  	        
GSM1304845 1	Gene expression data from bone marrow derived macrophages treated with LPS	"Bone marrow derived macrophages, treated with LPS"	"BMDM, LPS, 2"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304845 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304845 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304845	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304845_39151_BM_LPS_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304845_sample_table.txt norm	GSM1304845_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	lipopolysaccharide	10	nanogram per milliliter	none	  	        
GSM1304844 1	Gene expression data from bone marrow derived macrophages treated with LPS	"Bone marrow derived macrophages, treated with LPS"	"BMDM, LPS, 1"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304844 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304844 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304844	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304844_39150_BM_LPS_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304844_sample_table.txt norm	GSM1304844_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	lipopolysaccharide	10	nanogram per milliliter	none	  	        
GSM1304843 1	Gene expression data from bone marrow derived macrophages treated with IFNg	"Bone marrow derived macrophages, treated with IFNg"	"BMDM, IFNg, 4"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304843 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304843 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304843	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304843_39149_BM_IFNg_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304843_sample_table.txt norm	GSM1304843_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	interferon gamma	10	nanogram per milliliter	none	  	        
GSM1304842 1	Gene expression data from bone marrow derived macrophages treated with IFNg	"Bone marrow derived macrophages, treated with IFNg"	"BMDM, IFNg, 3"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304842 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304842 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304842	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304842_39148_BM_IFNg_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304842_sample_table.txt norm	GSM1304842_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	interferon gamma	10	nanogram per milliliter	none	  	        
GSM1304841 1	Gene expression data from bone marrow derived macrophages treated with IFNg	"Bone marrow derived macrophages, treated with IFNg"	"BMDM, IFNg, 2"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304841 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304841 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304841	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304841_39147_BM_IFNg_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304841_sample_table.txt norm	GSM1304841_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	interferon gamma	10	nanogram per milliliter	none	  	        
GSM1304840 1	Gene expression data from bone marrow derived macrophages treated with IFNg	"Bone marrow derived macrophages, treated with IFNg"	"BMDM, IFNg, 1"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304840 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304840 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304840	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304840_39146_BM_IFNg_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304840_sample_table.txt norm	GSM1304840_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	interferon gamma	10	nanogram per milliliter	none	  	        
GSM1304839 1	Gene expression data from untreated bone marrow derived macrophages	"Bone marrow derived macrophages, untreated"	"BMDM, untreated, 4"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304839 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304839 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304839	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304839_39145_BM_Untreated_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304839_sample_table.txt norm	GSM1304839_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	none	  	  	none	  	        
GSM1304838 1	Gene expression data from untreated bone marrow derived macrophages	"Bone marrow derived macrophages, untreated"	"BMDM, untreated, 3"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304838 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304838 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304838	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304838_39144_BM_Untreated_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304838_sample_table.txt norm	GSM1304838_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	none	  	  	none	  	        
GSM1304837 1	Gene expression data from untreated bone marrow derived macrophages	"Bone marrow derived macrophages, untreated"	"BMDM, untreated, 2"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304837 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304837 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304837	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304837_39143_BM_Untreated_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304837_sample_table.txt norm	GSM1304837_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	none	  	  	none	  	        
GSM1304836 1	Gene expression data from untreated bone marrow derived macrophages	"Bone marrow derived macrophages, untreated"	"BMDM, untreated, 1"	macrophages	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	bone marrow	EFO	http://purl.obolibrary.org/obo/UBERON_0002371	C57BL/6	EFO	EFO_0004472	P-GSE53986-2	ArrayExpress	P-GSE53986-3	ArrayExpress	GSM1304836 extract 1	total RNA	P-GSE53986-4	ArrayExpress	GSM1304836 LE 1	Biotin	P-GSE53986-5	ArrayExpress	GSM1304836	A-AFFY-45	ArrayExpress	array assay	P-GSE53986-6	ArrayExpress	GSM1304836_39142_BM_Untreated_SPR1090_Mouse430v2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.raw.1.zip	P-GSE53986-1	ArrayExpress	GSM1304836_sample_table.txt norm	GSM1304836_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53986/E-GEOD-53986.processed.1.zip	none	  	  	none