Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [c-source]	Term Source REF	Term Accession Number	Characteristics [genetic background]	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [strain]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [TIME]
GSM1288925 1	Aerobic glucose-limited chemostat 0.03h-1 T=72h after B.subtilis pulse-2	Glucose-limited chemostat culture -0.03h-1	Aerobic glucose-limited chemostat 0.03h-1 T=72h after B.subtilis pulse-2	glucose	EFO	http://purl.obolibrary.org/obo/CHEBI_17234	P. chrysogenum Wisconsin 54-1255 (ATCC 28089) was obtained from DSM-Anti-Infectives (Delft, The Netherlands) as spores on rice grains	Penicillin producer	Penicillium chrysogenum	EFO	http://purl.obolibrary.org/obo/NCBITaxon_5076	Wisconsin 54-1255 (ATCC 28089)	P-GSE53286-2	ArrayExpress	P-GSE53286-3	ArrayExpress	P-GSE53286-4	ArrayExpress	GSM1288925 extract 1	total RNA	P-GSE53286-5	ArrayExpress	GSM1288925 LE 1	biotin	P-GSE53286-6	ArrayExpress	GSM1288925	A-GEOD-6225	ArrayExpress	array assay	P-GSE53286-7	ArrayExpress	GSM1288925_TV20.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.raw.1.zip	P-GSE53286-1	ArrayExpress	GSM1288925_sample_table.txt norm	GSM1288925_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.processed.1.zip	72h after B.subtilis pulse
GSM1288924 1	Aerobic glucose-limited chemostat 0.03h-1 T=72h after B.subtilis pulse-1	Glucose-limited chemostat culture -0.03h-1	Aerobic glucose-limited chemostat 0.03h-1 T=72h after B.subtilis pulse-1	glucose	EFO	http://purl.obolibrary.org/obo/CHEBI_17234	P. chrysogenum Wisconsin 54-1255 (ATCC 28089) was obtained from DSM-Anti-Infectives (Delft, The Netherlands) as spores on rice grains	Penicillin producer	Penicillium chrysogenum	EFO	http://purl.obolibrary.org/obo/NCBITaxon_5076	Wisconsin 54-1255 (ATCC 28089)	P-GSE53286-2	ArrayExpress	P-GSE53286-3	ArrayExpress	P-GSE53286-4	ArrayExpress	GSM1288924 extract 1	total RNA	P-GSE53286-5	ArrayExpress	GSM1288924 LE 1	biotin	P-GSE53286-6	ArrayExpress	GSM1288924	A-GEOD-6225	ArrayExpress	array assay	P-GSE53286-7	ArrayExpress	GSM1288924_TV15.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.raw.1.zip	P-GSE53286-1	ArrayExpress	GSM1288924_sample_table.txt norm	GSM1288924_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.processed.1.zip	72h after B.subtilis pulse
GSM1288923 1	Aerobic glucose-limited chemostat 0.03h-1 T=48h after B.subtilis pulse-2	Glucose-limited chemostat culture -0.03h-1	Aerobic glucose-limited chemostat 0.03h-1 T=48h after B.subtilis pulse-2	glucose	EFO	http://purl.obolibrary.org/obo/CHEBI_17234	P. chrysogenum Wisconsin 54-1255 (ATCC 28089) was obtained from DSM-Anti-Infectives (Delft, The Netherlands) as spores on rice grains	Penicillin producer	Penicillium chrysogenum	EFO	http://purl.obolibrary.org/obo/NCBITaxon_5076	Wisconsin 54-1255 (ATCC 28089)	P-GSE53286-2	ArrayExpress	P-GSE53286-3	ArrayExpress	P-GSE53286-4	ArrayExpress	GSM1288923 extract 1	total RNA	P-GSE53286-5	ArrayExpress	GSM1288923 LE 1	biotin	P-GSE53286-6	ArrayExpress	GSM1288923	A-GEOD-6225	ArrayExpress	array assay	P-GSE53286-7	ArrayExpress	GSM1288923_TV19.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.raw.1.zip	P-GSE53286-1	ArrayExpress	GSM1288923_sample_table.txt norm	GSM1288923_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.processed.1.zip	48h after B.subtilis pulse
GSM1288922 1	Aerobic glucose-limited chemostat 0.03h-1 T=48h after B.subtilis pulse-1	Glucose-limited chemostat culture -0.03h-1	Aerobic glucose-limited chemostat 0.03h-1 T=48h after B.subtilis pulse-1	glucose	EFO	http://purl.obolibrary.org/obo/CHEBI_17234	P. chrysogenum Wisconsin 54-1255 (ATCC 28089) was obtained from DSM-Anti-Infectives (Delft, The Netherlands) as spores on rice grains	Penicillin producer	Penicillium chrysogenum	EFO	http://purl.obolibrary.org/obo/NCBITaxon_5076	Wisconsin 54-1255 (ATCC 28089)	P-GSE53286-2	ArrayExpress	P-GSE53286-3	ArrayExpress	P-GSE53286-4	ArrayExpress	GSM1288922 extract 1	total RNA	P-GSE53286-5	ArrayExpress	GSM1288922 LE 1	biotin	P-GSE53286-6	ArrayExpress	GSM1288922	A-GEOD-6225	ArrayExpress	array assay	P-GSE53286-7	ArrayExpress	GSM1288922_TV14.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.raw.1.zip	P-GSE53286-1	ArrayExpress	GSM1288922_sample_table.txt norm	GSM1288922_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.processed.1.zip	48h after B.subtilis pulse
GSM1288921 1	Aerobic glucose-limited chemostat 0.03h-1 T=24h after B.subtilis pulse-2	Glucose-limited chemostat culture -0.03h-1	Aerobic glucose-limited chemostat 0.03h-1 T=24h after B.subtilis pulse-2	glucose	EFO	http://purl.obolibrary.org/obo/CHEBI_17234	P. chrysogenum Wisconsin 54-1255 (ATCC 28089) was obtained from DSM-Anti-Infectives (Delft, The Netherlands) as spores on rice grains	Penicillin producer	Penicillium chrysogenum	EFO	http://purl.obolibrary.org/obo/NCBITaxon_5076	Wisconsin 54-1255 (ATCC 28089)	P-GSE53286-2	ArrayExpress	P-GSE53286-3	ArrayExpress	P-GSE53286-4	ArrayExpress	GSM1288921 extract 1	total RNA	P-GSE53286-5	ArrayExpress	GSM1288921 LE 1	biotin	P-GSE53286-6	ArrayExpress	GSM1288921	A-GEOD-6225	ArrayExpress	array assay	P-GSE53286-7	ArrayExpress	GSM1288921_TV13.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.raw.1.zip	P-GSE53286-1	ArrayExpress	GSM1288921_sample_table.txt norm	GSM1288921_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.processed.1.zip	24h after B.subtilis pulse
GSM1288920 1	Aerobic glucose-limited chemostat 0.03h-1 T=24h after B.subtilis pulse-1	Glucose-limited chemostat culture -0.03h-1	Aerobic glucose-limited chemostat 0.03h-1 T=24h after B.subtilis pulse-1	glucose	EFO	http://purl.obolibrary.org/obo/CHEBI_17234	P. chrysogenum Wisconsin 54-1255 (ATCC 28089) was obtained from DSM-Anti-Infectives (Delft, The Netherlands) as spores on rice grains	Penicillin producer	Penicillium chrysogenum	EFO	http://purl.obolibrary.org/obo/NCBITaxon_5076	Wisconsin 54-1255 (ATCC 28089)	P-GSE53286-2	ArrayExpress	P-GSE53286-3	ArrayExpress	P-GSE53286-4	ArrayExpress	GSM1288920 extract 1	total RNA	P-GSE53286-5	ArrayExpress	GSM1288920 LE 1	biotin	P-GSE53286-6	ArrayExpress	GSM1288920	A-GEOD-6225	ArrayExpress	array assay	P-GSE53286-7	ArrayExpress	GSM1288920_TV18.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.raw.1.zip	P-GSE53286-1	ArrayExpress	GSM1288920_sample_table.txt norm	GSM1288920_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.processed.1.zip	24h after B.subtilis pulse
GSM1288919 1	Aerobic glucose-limited chemostat 0.03h-1 T=5h after B.subtilis pulse-2	Glucose-limited chemostat culture -0.03h-1	Aerobic glucose-limited chemostat 0.03h-1 T=5h after B.subtilis pulse-2	glucose	EFO	http://purl.obolibrary.org/obo/CHEBI_17234	P. chrysogenum Wisconsin 54-1255 (ATCC 28089) was obtained from DSM-Anti-Infectives (Delft, The Netherlands) as spores on rice grains	Penicillin producer	Penicillium chrysogenum	EFO	http://purl.obolibrary.org/obo/NCBITaxon_5076	Wisconsin 54-1255 (ATCC 28089)	P-GSE53286-2	ArrayExpress	P-GSE53286-3	ArrayExpress	P-GSE53286-4	ArrayExpress	GSM1288919 extract 1	total RNA	P-GSE53286-5	ArrayExpress	GSM1288919 LE 1	biotin	P-GSE53286-6	ArrayExpress	GSM1288919	A-GEOD-6225	ArrayExpress	array assay	P-GSE53286-7	ArrayExpress	GSM1288919_TV17.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.raw.1.zip	P-GSE53286-1	ArrayExpress	GSM1288919_sample_table.txt norm	GSM1288919_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.processed.1.zip	5h after B.subtilis pulse
GSM1288918 1	Aerobic glucose-limited chemostat 0.03h-1 T=5h after B.subtilis pulse-1	Glucose-limited chemostat culture -0.03h-1	Aerobic glucose-limited chemostat 0.03h-1 T=5h after B.subtilis pulse-1	glucose	EFO	http://purl.obolibrary.org/obo/CHEBI_17234	P. chrysogenum Wisconsin 54-1255 (ATCC 28089) was obtained from DSM-Anti-Infectives (Delft, The Netherlands) as spores on rice grains	Penicillin producer	Penicillium chrysogenum	EFO	http://purl.obolibrary.org/obo/NCBITaxon_5076	Wisconsin 54-1255 (ATCC 28089)	P-GSE53286-2	ArrayExpress	P-GSE53286-3	ArrayExpress	P-GSE53286-4	ArrayExpress	GSM1288918 extract 1	total RNA	P-GSE53286-5	ArrayExpress	GSM1288918 LE 1	biotin	P-GSE53286-6	ArrayExpress	GSM1288918	A-GEOD-6225	ArrayExpress	array assay	P-GSE53286-7	ArrayExpress	GSM1288918_TV12.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.raw.1.zip	P-GSE53286-1	ArrayExpress	GSM1288918_sample_table.txt norm	GSM1288918_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.processed.1.zip	5h after B.subtilis pulse
GSM1288917 1	Aerobic glucose-limited chemostat 0.03h-1 T=0h-2	Glucose-limited chemostat culture -0.03h-1	Aerobic glucose-limited chemostat 0.03h-1 T=0h-2	glucose	EFO	http://purl.obolibrary.org/obo/CHEBI_17234	P. chrysogenum Wisconsin 54-1255 (ATCC 28089) was obtained from DSM-Anti-Infectives (Delft, The Netherlands) as spores on rice grains	Penicillin producer	Penicillium chrysogenum	EFO	http://purl.obolibrary.org/obo/NCBITaxon_5076	Wisconsin 54-1255 (ATCC 28089)	P-GSE53286-2	ArrayExpress	P-GSE53286-3	ArrayExpress	P-GSE53286-4	ArrayExpress	GSM1288917 extract 1	total RNA	P-GSE53286-5	ArrayExpress	GSM1288917 LE 1	biotin	P-GSE53286-6	ArrayExpress	GSM1288917	A-GEOD-6225	ArrayExpress	array assay	P-GSE53286-7	ArrayExpress	GSM1288917_TV11.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.raw.1.zip	P-GSE53286-1	ArrayExpress	GSM1288917_sample_table.txt norm	GSM1288917_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.processed.1.zip	0h
GSM1288916 1	Aerobic glucose-limited chemostat 0.03h-1 T=0h-1	Glucose-limited chemostat culture -0.03h-1	Aerobic glucose-limited chemostat 0.03h-1 T=0h-1	glucose	EFO	http://purl.obolibrary.org/obo/CHEBI_17234	P. chrysogenum Wisconsin 54-1255 (ATCC 28089) was obtained from DSM-Anti-Infectives (Delft, The Netherlands) as spores on rice grains	Penicillin producer	Penicillium chrysogenum	EFO	http://purl.obolibrary.org/obo/NCBITaxon_5076	Wisconsin 54-1255 (ATCC 28089)	P-GSE53286-2	ArrayExpress	P-GSE53286-3	ArrayExpress	P-GSE53286-4	ArrayExpress	GSM1288916 extract 1	total RNA	P-GSE53286-5	ArrayExpress	GSM1288916 LE 1	biotin	P-GSE53286-6	ArrayExpress	GSM1288916	A-GEOD-6225	ArrayExpress	array assay	P-GSE53286-7	ArrayExpress	GSM1288916_TV6.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.raw.1.zip	P-GSE53286-1	ArrayExpress	GSM1288916_sample_table.txt norm	GSM1288916_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-53286/E-GEOD-53286.processed.1.zip	0h