Source Name Comment [ENA_SAMPLE] Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [cell type] Term Source REF Term Accession Number Characteristics [mutation] Characteristics [organism] Term Source REF Term Accession Number Characteristics [passage] Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Comment [ENA_EXPERIMENT] Comment [Platform_title] Technology Type Protocol REF Term Source REF Scan Name Comment [ENA_RUN] FactorValue [CELL TYPE] Term Source REF Term Accession Number FactorValue [MUTATION] FactorValue [PASSAGE] FactorValue [TREATMENT] GSM1249138 1 SRS493234 gene expression in iPSC induced pluripotent stem cell Detroit551-shMeCP2-iPSCs Detroit551 no Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 17 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249138 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1249138 SRX367111 Illumina HiSeq 2000 (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015699 SRR1015699 Detroit551 no 17 shMeCP2 GSM1249137 1 SRS493233 gene expression in iPSC induced pluripotent stem cell from RTT patient RTT5-iPS-43bi RTT5 fibroblast X487W Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 16 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249137 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1249137 SRX367110 Illumina HiSeq 2000 (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015698 SRR1015698 RTT5 fibroblast X487W 16 no GSM1249136 1 SRS493232 gene expression in iPSC induced pluripotent stem cell from RTT patient RTT5-iPS-15bi RTT5 fibroblast X487W Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 4 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249136 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1249136 SRX367109 Illumina HiSeq 2000 (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015697 SRR1015697 RTT5 fibroblast X487W 4 no GSM1249135 1 SRS493231 gene expression in iPSC induced pluripotent stem cell from RTT patient RTT1-iPS-10bi RTT1 fibroblast T158M Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 7 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249135 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1249135 SRX367108 Illumina HiSeq 2000 (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015696 SRR1015696 RTT1 fibroblast T158M 7 no GSM1249134 1 SRS493230 gene expression in iPSC induced pluripotent stem cell from RTT patient RTT2-iPS-32bi RTT2 fibroblast Q244X Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 9 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249134 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1249134 SRX367107 Illumina Genome Analyzer II (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015695 SRR1015695 RTT2 fibroblast Q244X 9 no GSM1249133 1 SRS493229 gene expression in iPSC induced pluripotent stem cell from RTT patient RTT4-iPS-19bi RTT4 fibroblast R306C Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 15 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249133 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1249133 SRX367106 Illumina Genome Analyzer II (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015694 SRR1015694 RTT4 fibroblast R306C 15 no GSM1249132 1 SRS493228 gene expression in iPSC induced pluripotent stem cell from RTT patient RTT3-iPS-46bi RTT3 fibroblast E235fs Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 8 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249132 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1249132 SRX367105 Illumina Genome Analyzer II (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015693 SRR1015693 RTT3 fibroblast E235fs 8 no GSM1249131 1 SRS493227 gene expression in iPSC induced pluripotent stem cell from RTT patient RTT5-iPS-34m RTT5 fibroblast X487W Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 4 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249131 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1249131 SRX367104 Illumina Genome Analyzer II (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015692 SRR1015692 RTT5 fibroblast X487W 4 no GSM1249130 1 SRS493226 gene expression in iPSC induced pluripotent stem cell from RTT patient RTT4-iPS-16m RTT4 fibroblast R306C Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 5 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249130 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1249130 SRX367103 Illumina HiSeq 2000 (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015691 SRR1015691 RTT4 fibroblast R306C 5 no GSM1249129 1 SRS493225 gene expression in iPSC induced pluripotent stem cell from RTT patient RTT3-iPS-16m RTT3 fibroblast E235fs Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 8 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249129 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1249129 SRX367102 Illumina HiSeq 2000 (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015690 SRR1015690 RTT3 fibroblast E235fs 8 no GSM1249128 1 SRS493224 gene expression in iPSC induced pluripotent stem cell from RTT patient RTT5-iPS-42m RTT5 fibroblast X487W Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 11 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249128 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1249128 SRX367101 Illumina Genome Analyzer II (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015689 SRR1015689 RTT5 fibroblast X487W 11 no GSM1249127 1 SRS493223 gene expression in iPSC induced pluripotent stem cell from RTT patient RTT4-iPS-24w RTT4 fibroblast R306C Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 8 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249127 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1249127 SRX367100 Illumina Genome Analyzer II (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015688 SRR1015688 RTT4 fibroblast R306C 8 no GSM1249126 1 SRS493222 gene expression in iPSC induced pluripotent stem cell from RTT patient RTT5-iPS-31w RTT5 fibroblast X487W Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 5 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249126 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1249126 SRX367099 Illumina HiSeq 2000 (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015687 SRR1015687 RTT5 fibroblast X487W 5 no GSM1249125 1 SRS493221 gene expression in iPSC induced pluripotent stem cell from RTT patient RTT1-iPS-13w RTT1 fibroblast T158M Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 9 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249125 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1249125 SRX367098 Illumina Genome Analyzer II (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015686 SRR1015686 RTT1 fibroblast T158M 9 no GSM1249124 1 SRS493220 gene expression in iPSC induced pluripotent stem cell Detroit551-iPSCs Detroit551 no Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 5 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249124 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1249124 SRX367097 Illumina Genome Analyzer II (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015685 SRR1015685 Detroit551 no 5 no GSM1249123 1 SRS493219 gene expression in iPSC induced pluripotent stem cell PGP9-iPSCs PGP9 no Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 12 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249123 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1249123 SRX367096 Illumina Genome Analyzer II (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015684 SRR1015684 PGP9 no 12 no GSM1249122 1 SRS493218 gene expression in iPSC induced pluripotent stem cell PGP1-iPSCs PGP1 no Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 34 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249122 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1249122 SRX367095 Illumina Genome Analyzer II (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015683 SRR1015683 PGP1 no 34 no GSM1249121 1 SRS493217 gene expression in ESC human embryonic stem cell H9 H9 EFO EFO_0003045 no Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 48 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249121 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1249121 SRX367094 Illumina Genome Analyzer II (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015682 SRR1015682 H9 EFO EFO_0003045 no 48 no GSM1249120 1 SRS493216 gene expression in ESC human embryonic stem cell H7 H7 no Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 53 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249120 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1249120 SRX367093 Illumina Genome Analyzer II (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015681 SRR1015681 H7 no 53 no GSM1249119 1 SRS493215 gene expression in ESC human embryonic stem cell H1 H1 EFO EFO_0003042 no Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 40 P-GSE51607-1 ArrayExpress P-GSE51607-2 ArrayExpress P-GSE51607-3 ArrayExpress GSM1249119 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1249119 SRX367092 Illumina Genome Analyzer II (Homo sapiens) sequencing assay P-GSE51607-4 ArrayExpress SRR1015680 SRR1015680 H1 EFO EFO_0003042 no 40 no