Source Name	Comment [ENA_SAMPLE]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell line]	Characteristics [chip antibody]	Characteristics [chip antibody cat. #]	Characteristics [chip antibody vendor]	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [treated with]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Scan Name	Comment [ENA_RUN]	Array Data File	Comment [ArrayExpress FTP file]	FactorValue [GENOTYPE]	FactorValue [TREATED WITH]	Term Source REF	Term Accession Number
GSM1226521 1	SRS478241	Cultured cells	UNG KO gammaH2AX ChIP-seq, cisplatin-treated	DLD1	Anti-gamma H2A.X (phospho S139) antibody	ab2893	Abcam	UNG knockout; UNG-/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	cisplatin	EFO	http://purl.obolibrary.org/obo/CHEBI_27899	P-GSE50692-1	ArrayExpress	GSM1226521 extract 1	Illumina Genome Analyzer II	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1226521	SRX347197	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE50692-2	ArrayExpress	SRR974716	SRR974716	mut_cisplatin_yh2ax_chr1.sgr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50692/E-GEOD-50692.raw.1.zip	UNG knockout; UNG-/-	cisplatin	EFO	http://purl.obolibrary.org/obo/CHEBI_27899
GSM1226521 1	SRS478241	Cultured cells	UNG KO gammaH2AX ChIP-seq, cisplatin-treated	DLD1	Anti-gamma H2A.X (phospho S139) antibody	ab2893	Abcam	UNG knockout; UNG-/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	cisplatin	EFO	http://purl.obolibrary.org/obo/CHEBI_27899	P-GSE50692-1	ArrayExpress	GSM1226521 extract 1	Illumina Genome Analyzer II	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1226521	SRX347197	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE50692-2	ArrayExpress	SRR974716	SRR974716	GSM1226521_UNG_KO_cisplatin_yH2AX_peaks.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50692/E-GEOD-50692.raw.1.zip	UNG knockout; UNG-/-	cisplatin	EFO	http://purl.obolibrary.org/obo/CHEBI_27899
GSM1226520 1	SRS478240	Cultured cells	UNG KO gammaH2AX ChIP-seq, pemetrexed-treated	DLD1	Anti-gamma H2A.X (phospho S139) antibody	ab2893	Abcam	UNG knockout; UNG-/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	pemetrexed	  	  	P-GSE50692-1	ArrayExpress	GSM1226520 extract 1	Illumina HiScanSQ	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1226520	SRX347196	Illumina HiScanSQ (Homo sapiens)	sequencing assay	P-GSE50692-2	ArrayExpress	SRR974715	SRR974715	GSM1226520_UNG_KO_pemetrexed_yH2AX_peaks.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50692/E-GEOD-50692.raw.1.zip	UNG knockout; UNG-/-	pemetrexed	  	        
GSM1226520 1	SRS478240	Cultured cells	UNG KO gammaH2AX ChIP-seq, pemetrexed-treated	DLD1	Anti-gamma H2A.X (phospho S139) antibody	ab2893	Abcam	UNG knockout; UNG-/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	pemetrexed	  	  	P-GSE50692-1	ArrayExpress	GSM1226520 extract 1	Illumina HiScanSQ	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1226520	SRX347196	Illumina HiScanSQ (Homo sapiens)	sequencing assay	P-GSE50692-2	ArrayExpress	SRR974715	SRR974715	UNG_mut_pemetrexed_yH2AX_chr1.sgr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50692/E-GEOD-50692.raw.1.zip	UNG knockout; UNG-/-	pemetrexed	  	        
GSM1226519 1	SRS478239	Cultured cells	UNG KO gammaH2AX ChIP-seq, untreated	DLD1	Anti-gamma H2A.X (phospho S139) antibody	ab2893	Abcam	UNG knockout; UNG-/-	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	  	  	P-GSE50692-1	ArrayExpress	GSM1226519 extract 1	Illumina HiScanSQ	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1226519	SRX347195	Illumina HiScanSQ (Homo sapiens)	sequencing assay	P-GSE50692-2	ArrayExpress	SRR974714	SRR974714	UNG_mut_untreated_yH2AX_chr1.sgr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50692/E-GEOD-50692.raw.1.zip	UNG knockout; UNG-/-	none	  	        
GSM1226518 1	SRS478238	Cultured cells	UNG WT gammaH2AX ChIP-seq, cisplatin-treated	DLD1	Anti-gamma H2A.X (phospho S139) antibody	ab2893	Abcam	wild type; UNG+/+	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	cisplatin	EFO	http://purl.obolibrary.org/obo/CHEBI_27899	P-GSE50692-1	ArrayExpress	GSM1226518 extract 1	Illumina Genome Analyzer II	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1226518	SRX347194	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE50692-2	ArrayExpress	SRR974713	SRR974713	GSM1226518_UNG_WT_cisplatin_yH2AX_peaks.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50692/E-GEOD-50692.raw.1.zip	wild type; UNG+/+	cisplatin	EFO	http://purl.obolibrary.org/obo/CHEBI_27899
GSM1226518 1	SRS478238	Cultured cells	UNG WT gammaH2AX ChIP-seq, cisplatin-treated	DLD1	Anti-gamma H2A.X (phospho S139) antibody	ab2893	Abcam	wild type; UNG+/+	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	cisplatin	EFO	http://purl.obolibrary.org/obo/CHEBI_27899	P-GSE50692-1	ArrayExpress	GSM1226518 extract 1	Illumina Genome Analyzer II	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1226518	SRX347194	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE50692-2	ArrayExpress	SRR974713	SRR974713	UNG_WT_cisplatin_yH2AX_chr1.sgr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50692/E-GEOD-50692.raw.1.zip	wild type; UNG+/+	cisplatin	EFO	http://purl.obolibrary.org/obo/CHEBI_27899
GSM1226517 1	SRS478237	Cultured cells	UNG WT gammaH2AX ChIP-seq, pemetrexed-treated	DLD1	Anti-gamma H2A.X (phospho S139) antibody	ab2893	Abcam	wild type; UNG+/+	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	pemetrexed	  	  	P-GSE50692-1	ArrayExpress	GSM1226517 extract 1	Illumina HiScanSQ	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1226517	SRX347193	Illumina HiScanSQ (Homo sapiens)	sequencing assay	P-GSE50692-2	ArrayExpress	SRR974712	SRR974712	GSM1226517_UNG_WT_pemetrexed_yH2AX_peaks.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50692/E-GEOD-50692.raw.1.zip	wild type; UNG+/+	pemetrexed	  	        
GSM1226517 1	SRS478237	Cultured cells	UNG WT gammaH2AX ChIP-seq, pemetrexed-treated	DLD1	Anti-gamma H2A.X (phospho S139) antibody	ab2893	Abcam	wild type; UNG+/+	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	pemetrexed	  	  	P-GSE50692-1	ArrayExpress	GSM1226517 extract 1	Illumina HiScanSQ	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1226517	SRX347193	Illumina HiScanSQ (Homo sapiens)	sequencing assay	P-GSE50692-2	ArrayExpress	SRR974712	SRR974712	UNG_WT_pemetrexed_yH2AX_chr1.sgr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50692/E-GEOD-50692.raw.1.zip	wild type; UNG+/+	pemetrexed	  	        
GSM1226516 1	SRS478236	Cultured cells	UNG WT gammaH2AX ChIP-seq, untreated	DLD1	Anti-gamma H2A.X (phospho S139) antibody	ab2893	Abcam	wild type; UNG+/+	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	none	  	  	P-GSE50692-1	ArrayExpress	GSM1226516 extract 1	Illumina HiScanSQ	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1226516	SRX347192	Illumina HiScanSQ (Homo sapiens)	sequencing assay	P-GSE50692-2	ArrayExpress	SRR974711	SRR974711	UNG_WT_untreated_yH2AX_chr1.sgr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-50692/E-GEOD-50692.raw.2.zip	wild type; UNG+/+	none