Source Name Comment [Sample_source_name] Comment [Sample_title] Characteristics [biological replicate] Characteristics [cell line] Characteristics [dna enrichment] Characteristics [knockdown] Characteristics [organism] Term Source REF Term Accession Number Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Comment [ENA_EXPERIMENT] Comment [Platform_title] Technology Type FactorValue [BIOLOGICAL REPLICATE] FactorValue [DNA ENRICHMENT] FactorValue [KNOCKDOWN] GSM1215611 1 Tet2kd mES cells Anti-CMS_5hmC_Input_Tet2kd_rep3 2 V6.5 none, input Tet2 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215611 extract 1 Illumina Genome Analyzer II 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215611 SRX339582 Illumina Genome Analyzer II (Mus musculus) sequencing assay 2 none, input Tet2 kd GSM1215610 1 Tet2kd mES cells Anti-CMS_5hmC_Input_Tet2kd_rep2 1 V6.5 none, input Tet2 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215610 extract 1 Illumina Genome Analyzer II 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215610 SRX339581 Illumina Genome Analyzer II (Mus musculus) sequencing assay 1 none, input Tet2 kd GSM1215609 1 Tet2kd mES cells Anti-CMS_5hmC_Input_Tet2kd_rep1 1 V6.5 none, input Tet2 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215609 extract 1 Illumina HiSeq 1000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215609 SRX339580 Illumina HiSeq 1000 (Mus musculus) sequencing assay 1 none, input Tet2 kd GSM1215608 1 Tet1kd mES cells Anti-CMS_5hmC_Input_Tet1kd 1 V6.5 none, input Tet1 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215608 extract 1 Illumina Genome Analyzer II 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215608 SRX339579 Illumina Genome Analyzer II (Mus musculus) sequencing assay 1 none, input Tet1 kd GSM1215607 1 parental V6.5 mES cells Anti-CMS_5hmC_Input_parental_rep3 2 V6.5 none, input wt Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215607 extract 1 Illumina Genome Analyzer II 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215607 SRX339578 Illumina Genome Analyzer II (Mus musculus) sequencing assay 2 none, input wt GSM1215606 1 parental V6.5 mES cells Anti-CMS_5hmC_Input_parental_rep2 1 V6.5 none, input wt Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215606 extract 1 Illumina HiSeq 1000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215606 SRX339577 Illumina HiSeq 1000 (Mus musculus) sequencing assay 1 none, input wt GSM1215605 1 parental V6.5 mES cells Anti-CMS_5hmC_Input_parental_rep1 1 V6.5 none, input wt Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215605 extract 1 Illumina Genome Analyzer II 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215605 SRX339576 Illumina Genome Analyzer II (Mus musculus) sequencing assay 1 none, input wt GSM1215604 1 Tet2kd mES cells Anti-CMS_5hmC_IP_Tet2kd_rep3 2 V6.5 CMS antisera Tet2 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215604 extract 1 Illumina HiSeq 1000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215604 SRX339575 Illumina HiSeq 1000 (Mus musculus) sequencing assay 2 CMS antisera Tet2 kd GSM1215603 1 Tet2kd mES cells Anti-CMS_5hmC_IP_Tet2kd_rep2 1 V6.5 CMS antisera Tet2 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215603 extract 1 Illumina HiSeq 1000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215603 SRX339574 Illumina HiSeq 1000 (Mus musculus) sequencing assay 1 CMS antisera Tet2 kd GSM1215602 1 Tet2kd mES cells Anti-CMS_5hmC_IP_Tet2kd_rep1 1 V6.5 CMS antisera Tet2 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215602 extract 1 Illumina Genome Analyzer II 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215602 SRX339573 Illumina Genome Analyzer II (Mus musculus) sequencing assay 1 CMS antisera Tet2 kd GSM1215601 1 Tet1kd mES cells Anti-CMS_5hmC_IP_Tet1kd_rep3 3 V6.5 CMS antisera Tet1 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215601 extract 1 Illumina Genome Analyzer II 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215601 SRX339572 Illumina Genome Analyzer II (Mus musculus) sequencing assay 3 CMS antisera Tet1 kd GSM1215600 1 Tet1kd mES cells Anti-CMS_5hmC_IP_Tet1kd_rep2 2 V6.5 CMS antisera Tet1 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215600 extract 1 Illumina HiSeq 1000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215600 SRX339571 Illumina HiSeq 1000 (Mus musculus) sequencing assay 2 CMS antisera Tet1 kd GSM1215599 1 Tet1kd mES cells Anti-CMS_5hmC_IP_Tet1kd_rep1 1 V6.5 CMS antisera Tet1 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215599 extract 1 Illumina Genome Analyzer II 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215599 SRX339570 Illumina Genome Analyzer II (Mus musculus) sequencing assay 1 CMS antisera Tet1 kd GSM1215598 1 parental V6.5 mES cells Anti-CMS_5hmC_IP_parental_rep3 2 V6.5 CMS antisera none Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215598 extract 1 Illumina Genome Analyzer II 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215598 SRX339569 Illumina Genome Analyzer II (Mus musculus) sequencing assay 2 CMS antisera none GSM1215597 1 parental V6.5 mES cells Anti-CMS_5hmC_IP_parental_rep2 1 V6.5 CMS antisera none Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215597 extract 1 Illumina HiSeq 1000 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215597 SRX339568 Illumina HiSeq 1000 (Mus musculus) sequencing assay 1 CMS antisera none GSM1215596 1 parental V6.5 mES cells Anti-CMS_5hmC_IP_parental_rep1 1 V6.5 CMS antisera none Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-4 ArrayExpress GSM1215596 extract 1 Illumina Genome Analyzer II 5-methylcytidine antibody genomic MeDIP-Seq genomic DNA GSM1215596 SRX339567 Illumina Genome Analyzer II (Mus musculus) sequencing assay 1 CMS antisera none GSM1215591 1 Tet2 kd mES cells RNA_seq_Tet2kd_rep4 4 V6.5 Tet2 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-3 ArrayExpress GSM1215591 extract 1 AB SOLiD System cDNA transcriptomic RNA-Seq total RNA GSM1215591 SRX339565 AB SOLiD System (Mus musculus) sequencing assay 4 not specified Tet2 kd GSM1215590 1 Tet2 kd mES cells RNA_seq_Tet2kd_rep3 3 V6.5 Tet2 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-3 ArrayExpress GSM1215590 extract 1 AB SOLiD System cDNA transcriptomic RNA-Seq total RNA GSM1215590 SRX339564 AB SOLiD System (Mus musculus) sequencing assay 3 not specified Tet2 kd GSM1215589 1 Tet2 kd mES cells RNA_seq_Tet2kd_rep2 2 V6.5 Tet2 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-3 ArrayExpress GSM1215589 extract 1 AB SOLiD 4 System cDNA transcriptomic RNA-Seq total RNA GSM1215589 SRX339563 AB SOLiD 4 System (Mus musculus) sequencing assay 2 not specified Tet2 kd GSM1215588 1 Tet2 kd mES cells RNA_seq_Tet2kd_rep1 1 V6.5 Tet2 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-3 ArrayExpress GSM1215588 extract 1 AB SOLiD 4 System cDNA transcriptomic RNA-Seq total RNA GSM1215588 SRX339562 AB SOLiD 4 System (Mus musculus) sequencing assay 1 not specified Tet2 kd GSM1215587 1 Tet1 kd mES cells RNA_seq_Tet1kd_rep4 4 V6.5 Tet1 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-3 ArrayExpress GSM1215587 extract 1 AB SOLiD System cDNA transcriptomic RNA-Seq total RNA GSM1215587 SRX339561 AB SOLiD System (Mus musculus) sequencing assay 4 not specified Tet1 kd GSM1215586 1 Tet1 kd mES cells RNA_seq_Tet1kd_rep3 3 V6.5 Tet1 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-3 ArrayExpress GSM1215586 extract 1 AB SOLiD System cDNA transcriptomic RNA-Seq total RNA GSM1215586 SRX339560 AB SOLiD System (Mus musculus) sequencing assay 3 not specified Tet1 kd GSM1215585 1 Tet1 kd mES cells RNA_seq_Tet1kd_rep2 2 V6.5 Tet1 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-3 ArrayExpress GSM1215585 extract 1 AB SOLiD 4 System cDNA transcriptomic RNA-Seq total RNA GSM1215585 SRX339559 AB SOLiD 4 System (Mus musculus) sequencing assay 2 not specified Tet1 kd GSM1215584 1 Tet1 kd mES cells RNA_seq_Tet1kd_rep1 1 V6.5 Tet1 kd Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-3 ArrayExpress GSM1215584 extract 1 AB SOLiD 4 System cDNA transcriptomic RNA-Seq total RNA GSM1215584 SRX339558 AB SOLiD 4 System (Mus musculus) sequencing assay 1 not specified Tet1 kd GSM1215583 1 V6.5 mES cells RNA_seq_parental_rep4 4 V6.5 none Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-3 ArrayExpress GSM1215583 extract 1 AB SOLiD System cDNA transcriptomic RNA-Seq total RNA GSM1215583 SRX339557 AB SOLiD System (Mus musculus) sequencing assay 4 not specified none GSM1215582 1 V6.5 mES cells RNA_seq_parental_rep3 3 V6.5 none Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-3 ArrayExpress GSM1215582 extract 1 AB SOLiD System cDNA transcriptomic RNA-Seq total RNA GSM1215582 SRX339556 AB SOLiD System (Mus musculus) sequencing assay 3 not specified none GSM1215581 1 V6.5 mES cells RNA_seq_parental_rep2 2 V6.5 none Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-3 ArrayExpress GSM1215581 extract 1 AB SOLiD 4 System cDNA transcriptomic RNA-Seq total RNA GSM1215581 SRX339555 AB SOLiD 4 System (Mus musculus) sequencing assay 2 not specified none GSM1215580 1 V6.5 mES cells RNA_seq_parental_rep1 1 V6.5 none Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 P-GSE50201-2 ArrayExpress P-GSE50201-1 ArrayExpress P-GSE50201-3 ArrayExpress GSM1215580 extract 1 AB SOLiD 4 System cDNA transcriptomic RNA-Seq total RNA GSM1215580 SRX339554 AB SOLiD 4 System (Mus musculus) sequencing assay 1 not specified none