Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [carbon source]	Characteristics [electron acceptor]	Characteristics [genotype]	Characteristics [growth_phase]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [stressor]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [GENOTYPE]
GSM1200509 1	39D8	Desulfovibrio alaskensis str. G20 mutant str. JK02520, minimal media	JK02520-Dde_3000-minimal	lactate (60 mM)	sulfate (50 mM)	Dde_3000-gene disrupted by a transposon	mid-log	Desulfovibrio alaskensis G20	EFO	http://purl.obolibrary.org/obo/NCBITaxon_207559	none	P-GSE49529-2	ArrayExpress	P-GSE49529-3	ArrayExpress	P-GSE49529-4	ArrayExpress	GSM1200509 extract 1	total RNA	P-GSE49529-5	ArrayExpress	GSM1200509 LE 1	Alexa fluor 555	P-GSE49529-6	ArrayExpress	GSM1200509	A-GEOD-17530	ArrayExpress	array assay	P-GSE49529-7	ArrayExpress	GSM1200509_471661A12_G20_12plexregmut_13NOV12_300.ftr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.raw.1.zip	P-GSE49529-1	ArrayExpress	GSM1200509_sample_table.txt norm	GSM1200509_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.processed.1.zip	Dde_3000-gene disrupted by a transposon
GSM1200508 1	115B6	Desulfovibrio alaskensis str. G20 mutant str. JK07841, minimal media	JK07841-Dde_3127_minimal	lactate (60 mM)	sulfate (50 mM)	Dde_3127-gene disrupted by a transposon	mid-log	Desulfovibrio alaskensis G20	EFO	http://purl.obolibrary.org/obo/NCBITaxon_207559	none	P-GSE49529-2	ArrayExpress	P-GSE49529-3	ArrayExpress	P-GSE49529-4	ArrayExpress	GSM1200508 extract 1	total RNA	P-GSE49529-5	ArrayExpress	GSM1200508 LE 1	Alexa fluor 555	P-GSE49529-6	ArrayExpress	GSM1200508	A-GEOD-17530	ArrayExpress	array assay	P-GSE49529-7	ArrayExpress	GSM1200508_471661A11_G20_12plexregmut_13NOV12_450.ftr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.raw.1.zip	P-GSE49529-1	ArrayExpress	GSM1200508_sample_table.txt norm	GSM1200508_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.processed.1.zip	Dde_3127-gene disrupted by a transposon
GSM1200507 1	35C5	Desulfovibrio alaskensis str. G20 mutant str. JK02209, minimal media	JK02209-Dde_2365-minimal	lactate (60 mM)	sulfate (50 mM)	Dde_2365-gene disrupted by a transposon	mid-log	Desulfovibrio alaskensis G20	EFO	http://purl.obolibrary.org/obo/NCBITaxon_207559	none	P-GSE49529-2	ArrayExpress	P-GSE49529-3	ArrayExpress	P-GSE49529-4	ArrayExpress	GSM1200507 extract 1	total RNA	P-GSE49529-5	ArrayExpress	GSM1200507 LE 1	Alexa fluor 555	P-GSE49529-6	ArrayExpress	GSM1200507	A-GEOD-17530	ArrayExpress	array assay	P-GSE49529-7	ArrayExpress	GSM1200507_471661A10_G20_12plexregmut_13NOV12_300.ftr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.raw.1.zip	P-GSE49529-1	ArrayExpress	GSM1200507_sample_table.txt norm	GSM1200507_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.processed.1.zip	Dde_2365-gene disrupted by a transposon
GSM1200506 1	69D9	Desulfovibrio alaskensis str. G20 mutant str. JK04660, minimal media	JK04660-Dde_3135_SahR-minimal	lactate (60 mM)	sulfate (50 mM)	Dde_3135-gene disrupted by a transposon	mid-log	Desulfovibrio alaskensis G20	EFO	http://purl.obolibrary.org/obo/NCBITaxon_207559	none	P-GSE49529-2	ArrayExpress	P-GSE49529-3	ArrayExpress	P-GSE49529-4	ArrayExpress	GSM1200506 extract 1	total RNA	P-GSE49529-5	ArrayExpress	GSM1200506 LE 1	Alexa fluor 555	P-GSE49529-6	ArrayExpress	GSM1200506	A-GEOD-17530	ArrayExpress	array assay	P-GSE49529-7	ArrayExpress	GSM1200506_471661A09_G20_12plexregmut_13NOV12_320.ftr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.raw.1.zip	P-GSE49529-1	ArrayExpress	GSM1200506_sample_table.txt norm	GSM1200506_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.processed.1.zip	Dde_3135-gene disrupted by a transposon
GSM1200505 1	6H8	Desulfovibrio alaskensis str. G20 mutant str. JK00494, minimal media	JK00494-Dde_3327-phnF-minimal	lactate (60 mM)	sulfate (50 mM)	Dde_3327-gene disrupted by a transposon	mid-log	Desulfovibrio alaskensis G20	EFO	http://purl.obolibrary.org/obo/NCBITaxon_207559	none	P-GSE49529-2	ArrayExpress	P-GSE49529-3	ArrayExpress	P-GSE49529-4	ArrayExpress	GSM1200505 extract 1	total RNA	P-GSE49529-5	ArrayExpress	GSM1200505 LE 1	Alexa fluor 555	P-GSE49529-6	ArrayExpress	GSM1200505	A-GEOD-17530	ArrayExpress	array assay	P-GSE49529-7	ArrayExpress	GSM1200505_471661A08_G20_12plexregmut_13NOV12_300.ftr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.raw.1.zip	P-GSE49529-1	ArrayExpress	GSM1200505_sample_table.txt norm	GSM1200505_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.processed.1.zip	Dde_3327-gene disrupted by a transposon
GSM1200504 1	178G2	Desulfovibrio alaskensis str. G20 mutant str. JK12035, minimal media	JK12035-Dde_1283-minimal	lactate (60 mM)	sulfate (50 mM)	Dde_1283-gene disrupted by a transposon	mid-log	Desulfovibrio alaskensis G20	EFO	http://purl.obolibrary.org/obo/NCBITaxon_207559	none	P-GSE49529-2	ArrayExpress	P-GSE49529-3	ArrayExpress	P-GSE49529-4	ArrayExpress	GSM1200504 extract 1	total RNA	P-GSE49529-5	ArrayExpress	GSM1200504 LE 1	Alexa fluor 555	P-GSE49529-6	ArrayExpress	GSM1200504	A-GEOD-17530	ArrayExpress	array assay	P-GSE49529-7	ArrayExpress	GSM1200504_471661A07_G20_12plexregmut_13NOV12_360.ftr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.raw.1.zip	P-GSE49529-1	ArrayExpress	GSM1200504_sample_table.txt norm	GSM1200504_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.processed.1.zip	Dde_1283-gene disrupted by a transposon
GSM1200503 1	77E7	Desulfovibrio alaskensis str. G20 mutant str. JK05252, minimal media	JK05252-Dde_2226-minimal	lactate (60 mM)	sulfate (50 mM)	Dde_2226-gene disrupted by a transposon	mid-log	Desulfovibrio alaskensis G20	EFO	http://purl.obolibrary.org/obo/NCBITaxon_207559	none	P-GSE49529-2	ArrayExpress	P-GSE49529-3	ArrayExpress	P-GSE49529-4	ArrayExpress	GSM1200503 extract 1	total RNA	P-GSE49529-5	ArrayExpress	GSM1200503 LE 1	Alexa fluor 555	P-GSE49529-6	ArrayExpress	GSM1200503	A-GEOD-17530	ArrayExpress	array assay	P-GSE49529-7	ArrayExpress	GSM1200503_471661A06_G20_12plexregmut_13NOV12_300.ftr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.raw.1.zip	P-GSE49529-1	ArrayExpress	GSM1200503_sample_table.txt norm	GSM1200503_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.processed.1.zip	Dde_2226-gene disrupted by a transposon
GSM1200502 1	133C3	Desulfovibrio alaskensis str. G20 mutant str. JK08886, minimal media	JK08886-Dde_0289-minimal	lactate (60 mM)	sulfate (50 mM)	Dde_0289-gene disrupted by a transposon	mid-log	Desulfovibrio alaskensis G20	EFO	http://purl.obolibrary.org/obo/NCBITaxon_207559	none	P-GSE49529-2	ArrayExpress	P-GSE49529-3	ArrayExpress	P-GSE49529-4	ArrayExpress	GSM1200502 extract 1	total RNA	P-GSE49529-5	ArrayExpress	GSM1200502 LE 1	Alexa fluor 555	P-GSE49529-6	ArrayExpress	GSM1200502	A-GEOD-17530	ArrayExpress	array assay	P-GSE49529-7	ArrayExpress	GSM1200502_471661A05_G20_12plexregmut_13NOV12_300.ftr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.raw.1.zip	P-GSE49529-1	ArrayExpress	GSM1200502_sample_table.txt norm	GSM1200502_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.processed.1.zip	Dde_0289-gene disrupted by a transposon
GSM1200501 1	87D5	Desulfovibrio alaskensis str. G20 mutant str. JK05953, minimal media	JK05953-Dde_3135-minimal	lactate (60 mM)	sulfate (50 mM)	Dde_3135-gene disrupted by a transposon	mid-log	Desulfovibrio alaskensis G20	EFO	http://purl.obolibrary.org/obo/NCBITaxon_207559	none	P-GSE49529-2	ArrayExpress	P-GSE49529-3	ArrayExpress	P-GSE49529-4	ArrayExpress	GSM1200501 extract 1	total RNA	P-GSE49529-5	ArrayExpress	GSM1200501 LE 1	Alexa fluor 555	P-GSE49529-6	ArrayExpress	GSM1200501	A-GEOD-17530	ArrayExpress	array assay	P-GSE49529-7	ArrayExpress	GSM1200501_471661A04_G20_12plexregmut_13NOV12_300.ftr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.raw.1.zip	P-GSE49529-1	ArrayExpress	GSM1200501_sample_table.txt norm	GSM1200501_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.processed.1.zip	Dde_3135-gene disrupted by a transposon
GSM1200500 1	169E7	Desulfovibrio alaskensis str. G20 mutant str. JK11239, minimal media	JK11239-Dde_2226-minimal�	lactate (60 mM)	sulfate (50 mM)	Dde_2226-gene disrupted by a transposon	mid-log	Desulfovibrio alaskensis G20	EFO	http://purl.obolibrary.org/obo/NCBITaxon_207559	none	P-GSE49529-2	ArrayExpress	P-GSE49529-3	ArrayExpress	P-GSE49529-4	ArrayExpress	GSM1200500 extract 1	total RNA	P-GSE49529-5	ArrayExpress	GSM1200500 LE 1	Alexa fluor 555	P-GSE49529-6	ArrayExpress	GSM1200500	A-GEOD-17530	ArrayExpress	array assay	P-GSE49529-7	ArrayExpress	GSM1200500_471661A03_G20_12plexregmut_13NOV12_300.ftr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.raw.1.zip	P-GSE49529-1	ArrayExpress	GSM1200500_sample_table.txt norm	GSM1200500_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.processed.1.zip	Dde_2226-gene disrupted by a transposon
GSM1200499 1	WT	Desulfovibrio alaskensis str. G20, minimal media	G20_wildtype-minimal	lactate (60 mM)	sulfate (50 mM)	wild-type	mid-log	Desulfovibrio alaskensis G20	EFO	http://purl.obolibrary.org/obo/NCBITaxon_207559	none	P-GSE49529-2	ArrayExpress	P-GSE49529-3	ArrayExpress	P-GSE49529-4	ArrayExpress	GSM1200499 extract 1	total RNA	P-GSE49529-5	ArrayExpress	GSM1200499 LE 1	Alexa fluor 555	P-GSE49529-6	ArrayExpress	GSM1200499	A-GEOD-17530	ArrayExpress	array assay	P-GSE49529-7	ArrayExpress	GSM1200499_471661A02_G20_12plexregmut_13NOV12_400.ftr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.raw.1.zip	P-GSE49529-1	ArrayExpress	GSM1200499_sample_table.txt norm	GSM1200499_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.processed.1.zip	wild-type
GSM1200498 1	48C10	Desulfovibrio alaskensis str. G20 mutant str. JK03141, minimal media	JK03141-Dde_3327-phnF-minimal	lactate (60 mM)	sulfate (50 mM)	Dde_3327-gene disrupted by a transposon	mid-log	Desulfovibrio alaskensis G20	EFO	http://purl.obolibrary.org/obo/NCBITaxon_207559	none	P-GSE49529-2	ArrayExpress	P-GSE49529-3	ArrayExpress	P-GSE49529-4	ArrayExpress	GSM1200498 extract 1	total RNA	P-GSE49529-5	ArrayExpress	GSM1200498 LE 1	Alexa fluor 555	P-GSE49529-6	ArrayExpress	GSM1200498	A-GEOD-17530	ArrayExpress	array assay	P-GSE49529-7	ArrayExpress	GSM1200498_471661A01_G20_12plexregmut_13NOV12_320.ftr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.raw.1.zip	P-GSE49529-1	ArrayExpress	GSM1200498_sample_table.txt norm	GSM1200498_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49529/E-GEOD-49529.processed.1.zip	Dde_3327-gene disrupted by a transposon