Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [age] Characteristics [basal_brca1-like_pred] Characteristics [basal_brca1_pred_agilent] Characteristics [er] Characteristics [er_dbcg] Characteristics [family_id] Characteristics [general_brca1_pred_agilent] Characteristics [general_brca2_pred_agilent] Characteristics [grade] Characteristics [group] Characteristics [her2] Characteristics [her2_dbcg] Characteristics [lumb_brca2-like_pred] Characteristics [lumb_brca2_pred_agilent] Characteristics [menopause_status] Term Source REF Term Accession Number Characteristics [meth_brca1] Characteristics [meth_brca2] Characteristics [mutation_hgvs] Characteristics [organism] Term Source REF Term Accession Number Characteristics [pam50agilent] Term Source REF Term Accession Number Characteristics [pr] Characteristics [pr_dbcg] Characteristics [reference] Characteristics [tumor_size] Characteristics [who] Term Source REF Term Accession Number Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [age] FactorValue [basal_brca1-like_pred] FactorValue [basal_brca1_pred_agilent] FactorValue [er] FactorValue [er_dbcg] FactorValue [family_id] FactorValue [general_brca1_pred_agilent] FactorValue [general_brca2_pred_agilent] FactorValue [grade] FactorValue [group] FactorValue [her2] FactorValue [her2_dbcg] FactorValue [lumb_brca2-like_pred] FactorValue [lumb_brca2_pred_agilent] FactorValue [menopause_status] Term Source REF Term Accession Number FactorValue [meth_brca1] FactorValue [mutation_hgvs] FactorValue [pam50agilent] Term Source REF Term Accession Number FactorValue [pr] FactorValue [pr_dbcg] FactorValue [tumor_size] FactorValue [who] Term Source REF Term Accession Number GSM1199915 1 Breast tumor tissue 321a 51 1 1 020 1 non-BRCA1/2 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 7 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199915 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199915 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199915 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199915_321a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199915_sample_table.txt norm GSM1199915_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 51 not specified not specified 1 1 020 not specified not specified 1 non-BRCA1/2 0 not specified not specified not specified Premenopausal FALSE not specified LumA 1 1 7 invasive ductal carcinoma EFO EFO_0000186 GSM1199915 2 Universal Human Reference RNA (Stratagene) 321a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199915 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199915 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199915 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199915_321a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199915_sample_table.txt norm GSM1199915_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199914 1 Breast tumor tissue 319a 34 1 1 037 2 non-BRCA1/2 0 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 61 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM1199914 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199914 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199914 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199914_319a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199914_sample_table.txt norm GSM1199914_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 34 not specified not specified 1 1 037 not specified not specified 2 non-BRCA1/2 0 0 not specified not specified Premenopausal FALSE not specified LumA 1 1 61 invasive lobular carcinoma EFO EFO_0000553 GSM1199914 2 Universal Human Reference RNA (Stratagene) 319a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199914 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199914 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199914 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199914_319a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199914_sample_table.txt norm GSM1199914_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199913 1 Breast tumor tissue 318a 45 1 1 012 3 non-BRCA1/2 0 0 BRCA2-like Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 20 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199913 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199913 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199913 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199913_318a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199913_sample_table.txt norm GSM1199913_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 45 not specified not specified 1 1 012 not specified not specified 3 non-BRCA1/2 0 0 BRCA2-like not specified Premenopausal FALSE not specified LumB 1 1 20 invasive ductal carcinoma EFO EFO_0000186 GSM1199913 2 Universal Human Reference RNA (Stratagene) 318a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199913 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199913 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199913 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199913_318a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199913_sample_table.txt norm GSM1199913_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199912 2 Universal Human Reference RNA (Stratagene) 317a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199912 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199912 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199912 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199912_317a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199912_sample_table.txt norm GSM1199912_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199912 1 Breast tumor tissue 317a 44 1 1 006 2 non-BRCA1/2 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 normal EFO http://purl.obolibrary.org/obo/PATO_0000461 1 1 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199912 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199912 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199912 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199912_317a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199912_sample_table.txt norm GSM1199912_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 44 not specified not specified 1 1 006 not specified not specified 2 non-BRCA1/2 0 not specified not specified not specified Premenopausal FALSE not specified normal EFO http://purl.obolibrary.org/obo/PATO_0000461 1 1 15 invasive ductal carcinoma EFO EFO_0000186 GSM1199911 1 Breast tumor tissue 312a 47 Sporadic-like 0 0 001 non-BRCA1/2 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 13 Metaplastic carcinoma P-GSE49481-2 ArrayExpress GSM1199911 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199911 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199911 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199911_312a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199911_sample_table.txt norm GSM1199911_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 47 Sporadic-like not specified 0 0 001 not specified not specified not specified non-BRCA1/2 0 not specified not specified not specified Premenopausal not specified not specified basal EFO EFO_0001654 0 not specified 13 Metaplastic carcinoma GSM1199911 2 Universal Human Reference RNA (Stratagene) 312a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199911 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199911 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199911 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199911_312a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199911_sample_table.txt norm GSM1199911_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199910 1 Breast tumor tissue 174a 52 1 0 002 2 non-BRCA1/2 1 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 80 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199910 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199910 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199910 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199910_174a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199910_sample_table.txt norm GSM1199910_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 52 not specified not specified 1 0 002 not specified not specified 2 non-BRCA1/2 1 not specified not specified not specified Premenopausal FALSE not specified LumA 1 1 80 invasive ductal carcinoma EFO EFO_0000186 GSM1199910 2 Universal Human Reference RNA (Stratagene) 174a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199910 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199910 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199910 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199910_174a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199910_sample_table.txt norm GSM1199910_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199909 1 Breast tumor tissue 207a 70 1 1 056 3 non-BRCA1/2 1 Other FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 1 1 18 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199909 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199909 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199909 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199909_207a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199909_sample_table.txt norm GSM1199909_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 70 not specified not specified 1 1 056 not specified not specified 3 non-BRCA1/2 1 not specified not specified not specified Other FALSE not specified Her2 1 1 18 invasive ductal carcinoma EFO EFO_0000186 GSM1199909 2 Universal Human Reference RNA (Stratagene) 207a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199909 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199909 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199909 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199909_207a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199909_sample_table.txt norm GSM1199909_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199908 2 Universal Human Reference RNA (Stratagene) 280a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199908 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199908 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199908 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199908_280a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199908_sample_table.txt norm GSM1199908_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199908 1 Breast tumor tissue 280a 54 1 1 038 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 51 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM1199908 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199908 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199908 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199908_280a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199908_sample_table.txt norm GSM1199908_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 54 not specified not specified 1 1 038 not specified not specified not specified non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 1 1 51 invasive lobular carcinoma EFO EFO_0000553 GSM1199907 1 Breast tumor tissue 303a 29 1 1 047 3 non-BRCA1/2 1 1 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 0 35 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199907 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199907 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199907 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199907_303a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199907_sample_table.txt norm GSM1199907_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 29 not specified not specified 1 1 047 not specified not specified 3 non-BRCA1/2 1 1 not specified not specified Premenopausal FALSE not specified Her2 0 0 35 invasive ductal carcinoma EFO EFO_0000186 GSM1199907 2 Universal Human Reference RNA (Stratagene) 303a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199907 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199907 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199907 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199907_303a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199907_sample_table.txt norm GSM1199907_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199906 1 Breast tumor tissue 301a 45 BRCA1-like 0 0 031 3 non-BRCA1/2 0 0 Premenopausal TRUE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 27 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199906 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199906 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199906 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199906_301a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199906_sample_table.txt norm GSM1199906_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 45 BRCA1-like not specified 0 0 031 not specified not specified 3 non-BRCA1/2 0 0 not specified not specified Premenopausal TRUE not specified basal EFO EFO_0001654 0 0 27 invasive ductal carcinoma EFO EFO_0000186 GSM1199906 2 Universal Human Reference RNA (Stratagene) 301a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199906 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199906 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199906 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199906_301a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199906_sample_table.txt norm GSM1199906_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199905 1 Breast tumor tissue 299a 42 1 1 016 2 non-BRCA1/2 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 16 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199905 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199905 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199905 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199905_299a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199905_sample_table.txt norm GSM1199905_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 42 not specified not specified 1 1 016 not specified not specified 2 non-BRCA1/2 0 not specified not specified not specified Premenopausal not specified not specified LumA 1 1 16 invasive ductal carcinoma EFO EFO_0000186 GSM1199905 2 Universal Human Reference RNA (Stratagene) 299a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199905 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199905 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199905 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199905_299a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199905_sample_table.txt norm GSM1199905_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199904 2 Universal Human Reference RNA (Stratagene) 294a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199904 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199904 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199904 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199904_294a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199904_sample_table.txt norm GSM1199904_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199904 1 Breast tumor tissue 294a 48 1 1 010 2 non-BRCA1/2 0 0 Other FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 0 51 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM1199904 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199904 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199904 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199904_294a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199904_sample_table.txt norm GSM1199904_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 48 not specified not specified 1 1 010 not specified not specified 2 non-BRCA1/2 0 0 not specified not specified Other FALSE not specified LumA 1 0 51 invasive lobular carcinoma EFO EFO_0000553 GSM1199903 1 Breast tumor tissue 288a 46 1 1 003 1 non-BRCA1/2 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 10 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199903 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199903 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199903 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199903_288a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199903_sample_table.txt norm GSM1199903_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 46 not specified not specified 1 1 003 not specified not specified 1 non-BRCA1/2 0 not specified not specified not specified Premenopausal FALSE not specified LumA 1 1 10 invasive ductal carcinoma EFO EFO_0000186 GSM1199903 2 Universal Human Reference RNA (Stratagene) 288a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199903 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199903 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199903 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199903_288a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199903_sample_table.txt norm GSM1199903_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199902 2 Universal Human Reference RNA (Stratagene) 282a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199902 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199902 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199902 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199902_282a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199902_sample_table.txt norm GSM1199902_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199902 1 Breast tumor tissue 282a 60 1 1 049 3 non-BRCA1/2 0 BRCA2-like postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 21 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199902 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199902 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199902 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199902_282a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199902_sample_table.txt norm GSM1199902_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 60 not specified not specified 1 1 049 not specified not specified 3 non-BRCA1/2 0 not specified BRCA2-like not specified postmenopausal EFO EFO_0002721 FALSE not specified LumB 1 1 21 invasive ductal carcinoma EFO EFO_0000186 GSM1199901 2 Universal Human Reference RNA (Stratagene) 277a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199901 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199901 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199901 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199901_277a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199901_sample_table.txt norm GSM1199901_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199901 1 Breast tumor tissue 277a 45 1 0 034 3 non-BRCA1/2 0 BRCA2-like Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 120 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199901 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199901 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199901 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199901_277a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199901_sample_table.txt norm GSM1199901_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 45 not specified not specified 1 0 034 not specified not specified 3 non-BRCA1/2 0 not specified BRCA2-like not specified Premenopausal FALSE not specified LumB 1 1 120 invasive ductal carcinoma EFO EFO_0000186 GSM1199900 1 Breast tumor tissue 271a 35 1 057 non-BRCA1/2 0 0 BRCA2-like Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 P-GSE49481-2 ArrayExpress GSM1199900 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199900 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199900 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199900_271a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199900_sample_table.txt norm GSM1199900_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 35 not specified not specified 1 not specified 057 not specified not specified not specified non-BRCA1/2 0 0 BRCA2-like not specified Premenopausal FALSE not specified LumB 0 not specified not specified not specified GSM1199900 2 Universal Human Reference RNA (Stratagene) 271a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199900 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199900 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199900 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199900_271a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199900_sample_table.txt norm GSM1199900_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199899 1 Breast tumor tissue 270a 63 1 1 027 1 non-BRCA1/2 0 Sporadic-like postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 12 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199899 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199899 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199899 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199899_270a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199899_sample_table.txt norm GSM1199899_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 63 not specified not specified 1 1 027 not specified not specified 1 non-BRCA1/2 0 not specified Sporadic-like not specified postmenopausal EFO EFO_0002721 FALSE not specified LumB 1 1 12 invasive ductal carcinoma EFO EFO_0000186 GSM1199899 2 Universal Human Reference RNA (Stratagene) 270a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199899 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199899 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199899 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199899_270a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199899_sample_table.txt norm GSM1199899_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199898 2 Universal Human Reference RNA (Stratagene) 261a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199898 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199898 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199898 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199898_261a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199898_sample_table.txt norm GSM1199898_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199898 1 Breast tumor tissue 261a 55 1 1 004 2 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 12 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199898 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199898 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199898 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199898_261a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199898_sample_table.txt norm GSM1199898_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 55 not specified not specified 1 1 004 not specified not specified 2 non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 1 1 12 invasive ductal carcinoma EFO EFO_0000186 GSM1199897 2 Universal Human Reference RNA (Stratagene) 253a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199897 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199897 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199897 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199897_253a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199897_sample_table.txt norm GSM1199897_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199897 1 Breast tumor tissue 253a 50 1 1 019 3 non-BRCA1/2 0 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 30 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM1199897 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199897 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199897 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199897_253a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199897_sample_table.txt norm GSM1199897_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 50 not specified not specified 1 1 019 not specified not specified 3 non-BRCA1/2 0 0 not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 1 1 30 invasive lobular carcinoma EFO EFO_0000553 GSM1199896 2 Universal Human Reference RNA (Stratagene) 250a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199896 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199896 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199896 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199896_250a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199896_sample_table.txt norm GSM1199896_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199896 1 Breast tumor tissue 250a 71 1 1 046 non-BRCA1/2 0 Perimenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 15 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM1199896 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199896 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199896 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199896_250a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199896_sample_table.txt norm GSM1199896_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 71 not specified not specified 1 1 046 not specified not specified not specified non-BRCA1/2 0 not specified not specified not specified Perimenopausal FALSE not specified LumA 1 1 15 invasive lobular carcinoma EFO EFO_0000553 GSM1199895 1 Breast tumor tissue 249a 76 1 1 021 1 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 8 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199895 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199895 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199895 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199895_249a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199895_sample_table.txt norm GSM1199895_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 76 not specified not specified 1 1 021 not specified not specified 1 non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 1 1 8 invasive ductal carcinoma EFO EFO_0000186 GSM1199895 2 Universal Human Reference RNA (Stratagene) 249a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199895 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199895 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199895 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199895_249a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199895_sample_table.txt norm GSM1199895_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199894 2 Universal Human Reference RNA (Stratagene) 245a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199894 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199894 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199894 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199894_245a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199894_sample_table.txt norm GSM1199894_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199894 1 Breast tumor tissue 245a 36 0 0 007 3 non-BRCA1/2 0 Premenopausal TRUE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 normal EFO http://purl.obolibrary.org/obo/PATO_0000461 0 0 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199894 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199894 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199894 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199894_245a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199894_sample_table.txt norm GSM1199894_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 36 not specified not specified 0 0 007 not specified not specified 3 non-BRCA1/2 0 not specified not specified not specified Premenopausal TRUE not specified normal EFO http://purl.obolibrary.org/obo/PATO_0000461 0 0 15 invasive ductal carcinoma EFO EFO_0000186 GSM1199893 1 Breast tumor tissue 236a 47 1 1 032 2 non-BRCA1/2 0 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199893 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199893 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199893 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199893_236a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199893_sample_table.txt norm GSM1199893_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 47 not specified not specified 1 1 032 not specified not specified 2 non-BRCA1/2 0 0 not specified not specified Premenopausal FALSE not specified LumA 1 1 15 invasive ductal carcinoma EFO EFO_0000186 GSM1199893 2 Universal Human Reference RNA (Stratagene) 236a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199893 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199893 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199893 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199893_236a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199893_sample_table.txt norm GSM1199893_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199892 2 Universal Human Reference RNA (Stratagene) 227a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199892 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199892 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199892 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199892_227a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199892_sample_table.txt norm GSM1199892_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199892 1 Breast tumor tissue 227a 59 1 1 029 2 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 16 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199892 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199892 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199892 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199892_227a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199892_sample_table.txt norm GSM1199892_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 59 not specified not specified 1 1 029 not specified not specified 2 non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 1 1 16 invasive ductal carcinoma EFO EFO_0000186 GSM1199891 1 Breast tumor tissue 226a 59 1 1 014 2 non-BRCA1/2 0 Sporadic-like postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 45 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199891 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199891 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199891 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199891_226a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199891_sample_table.txt norm GSM1199891_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 59 not specified not specified 1 1 014 not specified not specified 2 non-BRCA1/2 0 not specified Sporadic-like not specified postmenopausal EFO EFO_0002721 not specified not specified LumB 0 0 45 invasive ductal carcinoma EFO EFO_0000186 GSM1199891 2 Universal Human Reference RNA (Stratagene) 226a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199891 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199891 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199891 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199891_226a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199891_sample_table.txt norm GSM1199891_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199890 1 Breast tumor tissue 336a 63 1 1 036 3 non-BRCA1/2 0 Sporadic-like postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 23 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199890 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199890 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199890 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199890_336a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199890_sample_table.txt norm GSM1199890_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 63 not specified not specified 1 1 036 not specified not specified 3 non-BRCA1/2 0 not specified Sporadic-like not specified postmenopausal EFO EFO_0002721 FALSE not specified LumB 1 1 23 invasive ductal carcinoma EFO EFO_0000186 GSM1199890 2 Universal Human Reference RNA (Stratagene) 336a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199890 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199890 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199890 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199890_336a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199890_sample_table.txt norm GSM1199890_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199889 1 Breast tumor tissue 333a 73 1 042 non-BRCA1/2 0 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 P-GSE49481-2 ArrayExpress GSM1199889 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199889 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199889 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199889_333a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199889_sample_table.txt norm GSM1199889_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 73 not specified not specified 1 not specified 042 not specified not specified not specified non-BRCA1/2 0 not specified not specified not specified not specified FALSE not specified LumA 1 not specified not specified not specified GSM1199889 2 Universal Human Reference RNA (Stratagene) 333a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199889 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199889 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199889 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199889_333a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199889_sample_table.txt norm GSM1199889_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199888 2 Universal Human Reference RNA (Stratagene) 331a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199888 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199888 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199888 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199888_331a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199888_sample_table.txt norm GSM1199888_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199888 1 Breast tumor tissue 331a 72 1 1 043 2 non-BRCA1/2 0 Sporadic-like postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 21 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199888 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199888 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199888 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199888_331a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199888_sample_table.txt norm GSM1199888_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 72 not specified not specified 1 1 043 not specified not specified 2 non-BRCA1/2 0 not specified Sporadic-like not specified postmenopausal EFO EFO_0002721 FALSE not specified LumB 0 0 21 invasive ductal carcinoma EFO EFO_0000186 GSM1199887 2 Universal Human Reference RNA (Stratagene) 328a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199887 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199887 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199887 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199887_328a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199887_sample_table.txt norm GSM1199887_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199887 1 Breast tumor tissue 328a 62 1 1 030 2 non-BRCA1/2 0 Sporadic-like postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 18 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199887 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199887 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199887 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199887_328a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.1.zip P-GSE49481-1 ArrayExpress GSM1199887_sample_table.txt norm GSM1199887_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 62 not specified not specified 1 1 030 not specified not specified 2 non-BRCA1/2 0 not specified Sporadic-like not specified postmenopausal EFO EFO_0002721 FALSE not specified LumB 1 1 18 invasive ductal carcinoma EFO EFO_0000186 GSM1199886 1 Breast tumor tissue 222a 66 1 1 050 2 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 11 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199886 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199886 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199886 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199886_222a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199886_sample_table.txt norm GSM1199886_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 66 not specified not specified 1 1 050 not specified not specified 2 non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 1 1 11 invasive ductal carcinoma EFO EFO_0000186 GSM1199886 2 Universal Human Reference RNA (Stratagene) 222a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199886 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199886 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199886 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199886_222a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199886_sample_table.txt norm GSM1199886_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199885 1 Breast tumor tissue 215a 45 1 1 015 non-BRCA1/2 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 16 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM1199885 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199885 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199885 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199885_215a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199885_sample_table.txt norm GSM1199885_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 45 not specified not specified 1 1 015 not specified not specified not specified non-BRCA1/2 0 not specified not specified not specified Premenopausal FALSE not specified LumA 1 1 16 invasive lobular carcinoma EFO EFO_0000553 GSM1199885 2 Universal Human Reference RNA (Stratagene) 215a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199885 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199885 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199885 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199885_215a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199885_sample_table.txt norm GSM1199885_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199884 2 Universal Human Reference RNA (Stratagene) 214a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199884 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199884 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199884 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199884_214a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199884_sample_table.txt norm GSM1199884_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199884 1 Breast tumor tissue 214a 37 BRCA1-like 0 0 031 3 non-BRCA1/2 0 Premenopausal TRUE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 8 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199884 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199884 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199884 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199884_214a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199884_sample_table.txt norm GSM1199884_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 37 BRCA1-like not specified 0 0 031 not specified not specified 3 non-BRCA1/2 0 not specified not specified not specified Premenopausal TRUE not specified basal EFO EFO_0001654 0 0 8 invasive ductal carcinoma EFO EFO_0000186 GSM1199883 2 Universal Human Reference RNA (Stratagene) 211a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199883 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199883 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199883 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199883_211a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199883_sample_table.txt norm GSM1199883_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199883 1 Breast tumor tissue 211a 86 1 0 006 3 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 0 0 32 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199883 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199883 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199883 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199883_211a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199883_sample_table.txt norm GSM1199883_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 86 not specified not specified 1 0 006 not specified not specified 3 non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 0 0 32 invasive ductal carcinoma EFO EFO_0000186 GSM1199882 1 Breast tumor tissue 209a 50 1 1 040 2 non-BRCA1/2 0 0 Sporadic-like Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 1 25 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM1199882 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199882 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199882 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199882_209a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199882_sample_table.txt norm GSM1199882_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 50 not specified not specified 1 1 040 not specified not specified 2 non-BRCA1/2 0 0 Sporadic-like not specified Premenopausal FALSE not specified LumB 0 1 25 invasive lobular carcinoma EFO EFO_0000553 GSM1199882 2 Universal Human Reference RNA (Stratagene) 209a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199882 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199882 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199882 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199882_209a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199882_sample_table.txt norm GSM1199882_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199881 1 Breast tumor tissue 204a 43 0 1 011 3 non-BRCA1/2 1 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 normal EFO http://purl.obolibrary.org/obo/PATO_0000461 1 1 24 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199881 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199881 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199881 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199881_204a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199881_sample_table.txt norm GSM1199881_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 43 not specified not specified 0 1 011 not specified not specified 3 non-BRCA1/2 1 not specified not specified not specified Premenopausal FALSE not specified normal EFO http://purl.obolibrary.org/obo/PATO_0000461 1 1 24 invasive ductal carcinoma EFO EFO_0000186 GSM1199881 2 Universal Human Reference RNA (Stratagene) 204a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199881 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199881 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199881 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199881_204a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199881_sample_table.txt norm GSM1199881_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199880 1 Breast tumor tissue 202a 38 1 1 039 2 non-BRCA1/2 0 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 23 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199880 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199880 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199880 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199880_202a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199880_sample_table.txt norm GSM1199880_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 38 not specified not specified 1 1 039 not specified not specified 2 non-BRCA1/2 0 0 not specified not specified Premenopausal FALSE not specified LumA 1 1 23 invasive ductal carcinoma EFO EFO_0000186 GSM1199880 2 Universal Human Reference RNA (Stratagene) 202a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199880 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199880 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199880 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199880_202a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199880_sample_table.txt norm GSM1199880_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199879 1 Breast tumor tissue 192a 37 1 1 045 1 non-BRCA1/2 0 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 45 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199879 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199879 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199879 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199879_192a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199879_sample_table.txt norm GSM1199879_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 37 not specified not specified 1 1 045 not specified not specified 1 non-BRCA1/2 0 0 not specified not specified Premenopausal FALSE not specified LumA 1 1 45 invasive ductal carcinoma EFO EFO_0000186 GSM1199879 2 Universal Human Reference RNA (Stratagene) 192a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199879 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199879 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199879 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199879_192a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199879_sample_table.txt norm GSM1199879_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199878 1 Breast tumor tissue 190a 54 1 1 024 2 non-BRCA1/2 0 Sporadic-like Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 12 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199878 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199878 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199878 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199878_190a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199878_sample_table.txt norm GSM1199878_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 54 not specified not specified 1 1 024 not specified not specified 2 non-BRCA1/2 0 not specified Sporadic-like not specified Premenopausal FALSE not specified LumB 1 1 12 invasive ductal carcinoma EFO EFO_0000186 GSM1199878 2 Universal Human Reference RNA (Stratagene) 190a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199878 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199878 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199878 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199878_190a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199878_sample_table.txt norm GSM1199878_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199877 2 Universal Human Reference RNA (Stratagene) 185a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199877 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199877 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199877 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199877_185a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199877_sample_table.txt norm GSM1199877_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199877 1 Breast tumor tissue 185a 45 1 1 029 3 non-BRCA1/2 1 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 22 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199877 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199877 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199877 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199877_185a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199877_sample_table.txt norm GSM1199877_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 45 not specified not specified 1 1 029 not specified not specified 3 non-BRCA1/2 1 not specified not specified not specified Premenopausal FALSE not specified LumA 1 1 22 invasive ductal carcinoma EFO EFO_0000186 GSM1199876 1 Breast tumor tissue 178a 70 1 1 048 1 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 0 0 11 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199876 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199876 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199876 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199876_178a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199876_sample_table.txt norm GSM1199876_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 70 not specified not specified 1 1 048 not specified not specified 1 non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 0 0 11 invasive ductal carcinoma EFO EFO_0000186 GSM1199876 2 Universal Human Reference RNA (Stratagene) 178a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199876 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199876 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199876 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199876_178a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199876_sample_table.txt norm GSM1199876_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199875 1 Breast tumor tissue 177a 29 1 1 018 3 non-BRCA1/2 1 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 1 1 22 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199875 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199875 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199875 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199875_177a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199875_sample_table.txt norm GSM1199875_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 29 not specified not specified 1 1 018 not specified not specified 3 non-BRCA1/2 1 not specified not specified not specified Premenopausal FALSE not specified Her2 1 1 22 invasive ductal carcinoma EFO EFO_0000186 GSM1199875 2 Universal Human Reference RNA (Stratagene) 177a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199875 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199875 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199875 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199875_177a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199875_sample_table.txt norm GSM1199875_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199874 2 Universal Human Reference RNA (Stratagene) 166a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199874 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199874 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199874 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199874_166a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199874_sample_table.txt norm GSM1199874_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199874 1 Breast tumor tissue 166a 48 1 1 005 2 non-BRCA1/2 1 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 0 19 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199874 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199874 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199874 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199874_166a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199874_sample_table.txt norm GSM1199874_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 48 not specified not specified 1 1 005 not specified not specified 2 non-BRCA1/2 1 not specified not specified not specified Premenopausal not specified not specified LumA 1 0 19 invasive ductal carcinoma EFO EFO_0000186 GSM1199873 2 Universal Human Reference RNA (Stratagene) 161a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199873 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199873 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199873 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199873_161a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199873_sample_table.txt norm GSM1199873_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199873 1 Breast tumor tissue 161a 46 1 1 017 2 non-BRCA1/2 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 22 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199873 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199873 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199873 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199873_161a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199873_sample_table.txt norm GSM1199873_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 46 not specified not specified 1 1 017 not specified not specified 2 non-BRCA1/2 0 not specified not specified not specified Premenopausal FALSE not specified LumA 1 1 22 invasive ductal carcinoma EFO EFO_0000186 GSM1199872 2 Universal Human Reference RNA (Stratagene) 151a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199872 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199872 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199872 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199872_151a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199872_sample_table.txt norm GSM1199872_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199872 1 Breast tumor tissue 151a 47 BRCA1-like 0 0 027 3 non-BRCA1/2 0 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 32 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199872 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199872 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199872 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199872_151a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199872_sample_table.txt norm GSM1199872_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 47 BRCA1-like not specified 0 0 027 not specified not specified 3 non-BRCA1/2 0 0 not specified not specified Premenopausal FALSE not specified basal EFO EFO_0001654 0 0 32 invasive ductal carcinoma EFO EFO_0000186 GSM1199871 1 Breast tumor tissue 146a 57 1 1 014 1 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199871 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199871 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199871 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199871_146a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199871_sample_table.txt norm GSM1199871_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 57 not specified not specified 1 1 014 not specified not specified 1 non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 1 1 15 invasive ductal carcinoma EFO EFO_0000186 GSM1199871 2 Universal Human Reference RNA (Stratagene) 146a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199871 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199871 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199871 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199871_146a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199871_sample_table.txt norm GSM1199871_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199870 1 Breast tumor tissue 145a 64 1 1 042 2 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 25 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199870 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199870 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199870 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199870_145a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199870_sample_table.txt norm GSM1199870_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 64 not specified not specified 1 1 042 not specified not specified 2 non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 1 1 25 invasive ductal carcinoma EFO EFO_0000186 GSM1199870 2 Universal Human Reference RNA (Stratagene) 145a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199870 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199870 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199870 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199870_145a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199870_sample_table.txt norm GSM1199870_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199869 2 Universal Human Reference RNA (Stratagene) 141a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199869 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199869 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199869 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199869_141a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199869_sample_table.txt norm GSM1199869_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199869 1 Breast tumor tissue 141a 54 1 009 non-BRCA1/2 1 BRCA2-like postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 14 P-GSE49481-2 ArrayExpress GSM1199869 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199869 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199869 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199869_141a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199869_sample_table.txt norm GSM1199869_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 54 not specified not specified 1 not specified 009 not specified not specified not specified non-BRCA1/2 1 not specified BRCA2-like not specified postmenopausal EFO EFO_0002721 FALSE not specified LumB 0 not specified 14 not specified GSM1199868 1 Breast tumor tissue 135a 39 BRCA1-like 0 0 026 3 non-BRCA1/2 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 8 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199868 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199868 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199868 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199868_135a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199868_sample_table.txt norm GSM1199868_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 39 BRCA1-like not specified 0 0 026 not specified not specified 3 non-BRCA1/2 0 not specified not specified not specified Premenopausal FALSE not specified basal EFO EFO_0001654 0 0 8 invasive ductal carcinoma EFO EFO_0000186 GSM1199868 2 Universal Human Reference RNA (Stratagene) 135a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199868 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199868 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199868 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199868_135a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199868_sample_table.txt norm GSM1199868_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199867 1 Breast tumor tissue 134a 61 0 0 022 3 non-BRCA1/2 1 Perimenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 0 17 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199867 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199867 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199867 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199867_134a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199867_sample_table.txt norm GSM1199867_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 61 not specified not specified 0 0 022 not specified not specified 3 non-BRCA1/2 1 not specified not specified not specified Perimenopausal FALSE not specified Her2 0 0 17 invasive ductal carcinoma EFO EFO_0000186 GSM1199867 2 Universal Human Reference RNA (Stratagene) 134a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199867 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199867 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199867 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199867_134a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199867_sample_table.txt norm GSM1199867_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199866 2 Universal Human Reference RNA (Stratagene) 132a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199866 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199866 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199866 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199866_132a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199866_sample_table.txt norm GSM1199866_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199866 1 Breast tumor tissue 132a 68 1 1 044 2 non-BRCA1/2 0 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 37 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM1199866 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199866 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199866 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199866_132a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199866_sample_table.txt norm GSM1199866_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 68 not specified not specified 1 1 044 not specified not specified 2 non-BRCA1/2 0 0 not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 1 1 37 invasive lobular carcinoma EFO EFO_0000553 GSM1199865 2 Universal Human Reference RNA (Stratagene) 126a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199865 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199865 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199865 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199865_126a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199865_sample_table.txt norm GSM1199865_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199865 1 Breast tumor tissue 126a 33 1 1 024 2 non-BRCA1/2 0 Sporadic-like Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 20 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199865 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199865 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199865 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199865_126a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199865_sample_table.txt norm GSM1199865_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 33 not specified not specified 1 1 024 not specified not specified 2 non-BRCA1/2 0 not specified Sporadic-like not specified Premenopausal FALSE not specified LumB 1 1 20 invasive ductal carcinoma EFO EFO_0000186 GSM1199864 2 Universal Human Reference RNA (Stratagene) 121a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199864 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199864 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199864 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199864_121a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199864_sample_table.txt norm GSM1199864_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199864 1 Breast tumor tissue 121a 41 1 1 034 1 non-BRCA1/2 0 BRCA2-like Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 62 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199864 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199864 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199864 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199864_121a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199864_sample_table.txt norm GSM1199864_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 41 not specified not specified 1 1 034 not specified not specified 1 non-BRCA1/2 0 not specified BRCA2-like not specified Premenopausal FALSE not specified LumB 1 1 62 invasive ductal carcinoma EFO EFO_0000186 GSM1199863 1 Breast tumor tissue 120a 43 1 1 013 2 non-BRCA1/2 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 10 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199863 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199863 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199863 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199863_120a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199863_sample_table.txt norm GSM1199863_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 43 not specified not specified 1 1 013 not specified not specified 2 non-BRCA1/2 0 not specified not specified not specified Premenopausal FALSE not specified LumA 1 1 10 invasive ductal carcinoma EFO EFO_0000186 GSM1199863 2 Universal Human Reference RNA (Stratagene) 120a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199863 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199863 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199863 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199863_120a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199863_sample_table.txt norm GSM1199863_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199862 1 Breast tumor tissue 113a 73 1 1 033 1 non-BRCA1/2 0 Sporadic-like postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 20 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199862 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199862 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199862 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199862_113a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199862_sample_table.txt norm GSM1199862_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 73 not specified not specified 1 1 033 not specified not specified 1 non-BRCA1/2 0 not specified Sporadic-like not specified postmenopausal EFO EFO_0002721 FALSE not specified LumB 1 1 20 invasive ductal carcinoma EFO EFO_0000186 GSM1199862 2 Universal Human Reference RNA (Stratagene) 113a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199862 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199862 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199862 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199862_113a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199862_sample_table.txt norm GSM1199862_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199861 2 Universal Human Reference RNA (Stratagene) 110a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199861 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199861 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199861 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199861_110a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199861_sample_table.txt norm GSM1199861_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199861 1 Breast tumor tissue 110a 42 BRCA1-like 0 0 023 2 non-BRCA1/2 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 13 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199861 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199861 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199861 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199861_110a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199861_sample_table.txt norm GSM1199861_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 42 BRCA1-like not specified 0 0 023 not specified not specified 2 non-BRCA1/2 0 not specified not specified not specified Premenopausal FALSE not specified basal EFO EFO_0001654 0 0 13 invasive ductal carcinoma EFO EFO_0000186 GSM1199860 1 Breast tumor tissue 107a 65 0 0 055 2 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 0 40 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199860 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199860 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199860 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199860_107a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199860_sample_table.txt norm GSM1199860_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 65 not specified not specified 0 0 055 not specified not specified 2 non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified Her2 0 0 40 invasive ductal carcinoma EFO EFO_0000186 GSM1199860 2 Universal Human Reference RNA (Stratagene) 107a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199860 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199860 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199860 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199860_107a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199860_sample_table.txt norm GSM1199860_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199859 1 Breast tumor tissue 105a 64 1 1 053 1 non-BRCA1/2 0 Sporadic-like postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 14 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199859 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199859 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199859 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199859_105a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199859_sample_table.txt norm GSM1199859_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 64 not specified not specified 1 1 053 not specified not specified 1 non-BRCA1/2 0 not specified Sporadic-like not specified postmenopausal EFO EFO_0002721 FALSE not specified LumB 1 1 14 invasive ductal carcinoma EFO EFO_0000186 GSM1199859 2 Universal Human Reference RNA (Stratagene) 105a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199859 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199859 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199859 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199859_105a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199859_sample_table.txt norm GSM1199859_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199858 1 Breast tumor tissue 104a 61 1 1 041 2 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 0 9 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199858 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199858 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199858 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199858_104a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199858_sample_table.txt norm GSM1199858_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 61 not specified not specified 1 1 041 not specified not specified 2 non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 0 not specified 9 invasive ductal carcinoma EFO EFO_0000186 GSM1199858 2 Universal Human Reference RNA (Stratagene) 104a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199858 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199858 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199858 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199858_104a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199858_sample_table.txt norm GSM1199858_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199857 1 Breast tumor tissue 103a 66 1 1 025 1 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 0 1 11 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199857 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199857 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199857 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199857_103a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199857_sample_table.txt norm GSM1199857_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 66 not specified not specified 1 1 025 not specified not specified 1 non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 0 1 11 invasive ductal carcinoma EFO EFO_0000186 GSM1199857 2 Universal Human Reference RNA (Stratagene) 103a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199857 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199857 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199857 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199857_103a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.2.zip P-GSE49481-1 ArrayExpress GSM1199857_sample_table.txt norm GSM1199857_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199856 2 Universal Human Reference RNA (Stratagene) 098a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199856 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199856 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199856 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199856_098a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199856_sample_table.txt norm GSM1199856_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199856 1 Breast tumor tissue 098a 32 Sporadic-like 0 0 008 3 non-BRCA1/2 0 1 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 35 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199856 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199856 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199856 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199856_098a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199856_sample_table.txt norm GSM1199856_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 32 Sporadic-like not specified 0 0 008 not specified not specified 3 non-BRCA1/2 0 1 not specified not specified Premenopausal FALSE not specified basal EFO EFO_0001654 0 0 35 invasive ductal carcinoma EFO EFO_0000186 GSM1199855 1 Breast tumor tissue 097a 45 1 1 030 3 non-BRCA1/2 0 Sporadic-like Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 16 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199855 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199855 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199855 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199855_097a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199855_sample_table.txt norm GSM1199855_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 45 not specified not specified 1 1 030 not specified not specified 3 non-BRCA1/2 0 not specified Sporadic-like not specified Premenopausal not specified not specified LumB 1 1 16 invasive ductal carcinoma EFO EFO_0000186 GSM1199855 2 Universal Human Reference RNA (Stratagene) 097a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199855 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199855 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199855 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199855_097a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199855_sample_table.txt norm GSM1199855_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199854 1 Breast tumor tissue 089a 50 1 1 058 2 non-BRCA1/2 0 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 30 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199854 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199854 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199854 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199854_089a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199854_sample_table.txt norm GSM1199854_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 50 not specified not specified 1 1 058 not specified not specified 2 non-BRCA1/2 0 0 not specified not specified Premenopausal FALSE not specified LumA 1 1 30 invasive ductal carcinoma EFO EFO_0000186 GSM1199854 2 Universal Human Reference RNA (Stratagene) 089a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199854 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199854 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199854 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199854_089a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199854_sample_table.txt norm GSM1199854_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199853 2 Universal Human Reference RNA (Stratagene) 086a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199853 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199853 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199853 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199853_086a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199853_sample_table.txt norm GSM1199853_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199853 1 Breast tumor tissue 086a 81 0 0 018 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 0 34 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199853 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199853 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199853 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199853_086a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199853_sample_table.txt norm GSM1199853_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 81 not specified not specified 0 0 018 not specified not specified not specified non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified Her2 0 0 34 invasive ductal carcinoma EFO EFO_0000186 GSM1199852 2 Universal Human Reference RNA (Stratagene) 078a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199852 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199852 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199852 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199852_078a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199852_sample_table.txt norm GSM1199852_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199852 1 Breast tumor tissue 078a 76 1 1 017 1 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 24 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199852 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199852 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199852 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199852_078a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199852_sample_table.txt norm GSM1199852_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 76 not specified not specified 1 1 017 not specified not specified 1 non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 1 1 24 invasive ductal carcinoma EFO EFO_0000186 GSM1199851 2 Universal Human Reference RNA (Stratagene) 076a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199851 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199851 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199851 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199851_076a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199851_sample_table.txt norm GSM1199851_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199851 1 Breast tumor tissue 076a 53 BRCA1-like 0 035 3 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 17 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199851 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199851 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199851 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199851_076a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199851_sample_table.txt norm GSM1199851_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 53 BRCA1-like not specified 0 not specified 035 not specified not specified 3 non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified basal EFO EFO_0001654 0 not specified 17 invasive ductal carcinoma EFO EFO_0000186 GSM1199850 2 Universal Human Reference RNA (Stratagene) 073a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199850 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199850 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199850 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199850_073a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199850_sample_table.txt norm GSM1199850_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199850 1 Breast tumor tissue 073a 57 1 1 052 2 non-BRCA1/2 0 postmenopausal EFO EFO_0002721 FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 27 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199850 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199850 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199850 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199850_073a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199850_sample_table.txt norm GSM1199850_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 57 not specified not specified 1 1 052 not specified not specified 2 non-BRCA1/2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 FALSE not specified LumA 1 not specified 27 invasive ductal carcinoma EFO EFO_0000186 GSM1199849 1 Breast tumor tissue 066a 47 BRCA1-like 0 0 051 non-BRCA1/2 0 Premenopausal TRUE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 20 Medullary carcinoma P-GSE49481-2 ArrayExpress GSM1199849 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199849 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199849 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199849_066a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199849_sample_table.txt norm GSM1199849_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 47 BRCA1-like not specified 0 0 051 not specified not specified not specified non-BRCA1/2 0 not specified not specified not specified Premenopausal TRUE not specified basal EFO EFO_0001654 0 0 20 Medullary carcinoma GSM1199849 2 Universal Human Reference RNA (Stratagene) 066a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199849 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199849 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199849 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199849_066a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199849_sample_table.txt norm GSM1199849_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199848 2 Universal Human Reference RNA (Stratagene) 006a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199848 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199848 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199848 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199848_006a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199848_sample_table.txt norm GSM1199848_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199848 1 Breast tumor tissue 006a 36 0 0 028 2 non-BRCA1/2 1 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 0 30 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM1199848 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199848 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199848 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199848_006a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199848_sample_table.txt norm GSM1199848_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 36 not specified not specified 0 0 028 not specified not specified 2 non-BRCA1/2 1 not specified not specified not specified Premenopausal FALSE not specified Her2 0 0 30 invasive ductal carcinoma EFO EFO_0000186 GSM1199847 2 Universal Human Reference RNA (Stratagene) 003a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199847 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199847 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199847 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199847_003a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199847_sample_table.txt norm GSM1199847_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199847 1 Breast tumor tissue 003a 41 1 1 029 2 non-BRCA1/2 0 0 Premenopausal FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 17 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM1199847 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199847 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199847 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199847_003a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199847_sample_table.txt norm GSM1199847_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 41 not specified not specified 1 1 029 not specified not specified 2 non-BRCA1/2 0 0 not specified not specified Premenopausal FALSE not specified LumA 1 1 17 invasive lobular carcinoma EFO EFO_0000553 GSM1199846 2 Universal Human Reference RNA (Stratagene) 002a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM1199846 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM1199846 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM1199846 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199846_002a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199846_sample_table.txt norm GSM1199846_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM1199846 1 Breast tumor tissue 002a 50 1 1 054 non-BRCA1/2 0 BRCA2-like FALSE FALSE Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 P-GSE49481-2 ArrayExpress GSM1199846 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM1199846 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM1199846 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM1199846_002a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM1199846_sample_table.txt norm GSM1199846_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 50 not specified not specified 1 1 054 not specified not specified not specified non-BRCA1/2 0 not specified BRCA2-like not specified not specified FALSE not specified LumB 1 not specified not specified not specified GSM985322 2 K088 Universal Human Reference RNA (Stratagene) 320a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985322 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985322 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985322 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985322_320a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985322_sample_table.txt norm GSM985322_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985322 1 K088 Breast tumor tissue 320a 47 1 1 Sporadic Sporadic 2 Sporadic 0 Sporadic Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 19 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985322 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985322 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985322 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985322_320a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985322_sample_table.txt norm GSM985322_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 47 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified Sporadic Premenopausal not specified not specified LumB 1 1 19 invasive ductal carcinoma EFO EFO_0000186 GSM985321 2 K127 Universal Human Reference RNA (Stratagene) 316a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985321 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985321 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985321 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985321_316a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985321_sample_table.txt norm GSM985321_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985321 1 K127 Breast tumor tissue 316a 80 1 1 Sporadic Sporadic 1 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 20 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985321 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985321 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985321 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985321_316a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985321_sample_table.txt norm GSM985321_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 80 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 not specified 20 invasive lobular carcinoma EFO EFO_0000553 GSM985320 2 K123 Universal Human Reference RNA (Stratagene) 315a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985320 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985320 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985320 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985320_315a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985320_sample_table.txt norm GSM985320_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985320 1 K123 Breast tumor tissue 315a 44 1 0 Sporadic BRCA2 2 Sporadic 0 Sporadic Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 45 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985320 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985320 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985320 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985320_315a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985320_sample_table.txt norm GSM985320_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 44 not specified not specified 1 0 not specified Sporadic BRCA2 2 Sporadic 0 not specified not specified Sporadic Premenopausal not specified not specified LumB 1 1 45 invasive ductal carcinoma EFO EFO_0000186 GSM985319 1 K041 Breast tumor tissue 313a 75 BRCA1 0 0 BRCA1 Sporadic 3 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 37 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985319 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985319 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985319 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985319_313a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985319_sample_table.txt norm GSM985319_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 75 not specified BRCA1 0 0 not specified BRCA1 Sporadic 3 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified basal EFO EFO_0001654 0 0 37 invasive ductal carcinoma EFO EFO_0000186 GSM985319 2 K041 Universal Human Reference RNA (Stratagene) 313a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985319 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985319 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985319 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985319_313a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985319_sample_table.txt norm GSM985319_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985318 2 K039 Universal Human Reference RNA (Stratagene) 311a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985318 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985318 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985318 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985318_311a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985318_sample_table.txt norm GSM985318_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985318 1 K039 Breast tumor tissue 311a 53 1 1 Sporadic BRCA2 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 30 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985318 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985318 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985318 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985318_311a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985318_sample_table.txt norm GSM985318_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 53 not specified not specified 1 1 not specified Sporadic BRCA2 not specified Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 30 invasive lobular carcinoma EFO EFO_0000553 GSM985317 1 K062 Breast tumor tissue 309a 75 1 1 Sporadic BRCA2 2 Sporadic 0 BRCA2 Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 18 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985317 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985317 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985317 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985317_309a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985317_sample_table.txt norm GSM985317_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 75 not specified not specified 1 1 not specified Sporadic BRCA2 2 Sporadic 0 not specified not specified BRCA2 Perimenopausal not specified not specified LumB 1 1 18 invasive ductal carcinoma EFO EFO_0000186 GSM985317 2 K062 Universal Human Reference RNA (Stratagene) 309a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985317 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985317 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985317 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985317_309a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985317_sample_table.txt norm GSM985317_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985316 2 A003 Universal Human Reference RNA (Stratagene) 308a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985316 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985316 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985316 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985316_308a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985316_sample_table.txt norm GSM985316_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985316 1 A003 Breast tumor tissue 308a 48 1 1 BRCA2 2 BRCA2 0 BRCA2 postmenopausal EFO EFO_0002721 BRCA2 c.2830A>T, Exon11, p.(Lys944*) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 28 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985316 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985316 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985316 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985316_308a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985316_sample_table.txt norm GSM985316_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 48 not specified not specified 1 1 not specified not specified BRCA2 2 BRCA2 0 not specified not specified BRCA2 postmenopausal EFO EFO_0002721 not specified BRCA2 c.2830A>T, Exon11, p.(Lys944*) LumB 1 1 28 invasive ductal carcinoma EFO EFO_0000186 GSM985315 2 A107 Universal Human Reference RNA (Stratagene) 307a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985315 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985315 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985315 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985315_307a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985315_sample_table.txt norm GSM985315_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985315 1 A107 Breast tumor tissue 307a 50 1 1 BRCA2 BRCA2 0 Premenopausal BRCA2 c.5576_5579delTTAA, Exon11, p.(Ile1859Lysfs*3) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 25 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985315 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985315 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985315 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985315_307a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985315_sample_table.txt norm GSM985315_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 50 not specified not specified 1 1 not specified not specified BRCA2 not specified BRCA2 0 not specified not specified not specified Premenopausal not specified BRCA2 c.5576_5579delTTAA, Exon11, p.(Ile1859Lysfs*3) LumA 1 not specified 25 invasive lobular carcinoma EFO EFO_0000553 GSM985314 1 K059 Breast tumor tissue 305a 69 1 1 Sporadic BRCA2 Sporadic 0 Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 42 mucinous carcinoma EFO EFO_0000197 P-GSE49481-2 ArrayExpress GSM985314 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985314 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985314 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985314_305a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985314_sample_table.txt norm GSM985314_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 69 not specified not specified 1 1 not specified Sporadic BRCA2 not specified Sporadic 0 not specified not specified not specified Perimenopausal not specified not specified LumA 1 1 42 mucinous carcinoma EFO EFO_0000197 GSM985314 2 K059 Universal Human Reference RNA (Stratagene) 305a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985314 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985314 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985314 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985314_305a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985314_sample_table.txt norm GSM985314_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985313 1 K101 Breast tumor tissue 016a 85 1 1 Sporadic Sporadic Sporadic 0 Sporadic Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 1 28 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985313 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985313 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985313 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985313_016a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985313_sample_table.txt norm GSM985313_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 85 not specified not specified 1 1 not specified Sporadic Sporadic not specified Sporadic 0 not specified not specified Sporadic Perimenopausal not specified not specified LumB 0 1 28 invasive lobular carcinoma EFO EFO_0000553 GSM985313 2 K101 Universal Human Reference RNA (Stratagene) 016a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985313 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985313 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985313 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985313_016a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985313_sample_table.txt norm GSM985313_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985312 2 K128 Universal Human Reference RNA (Stratagene) 241a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985312 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985312 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985312 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985312_241a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985312_sample_table.txt norm GSM985312_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985312 1 K128 Breast tumor tissue 241a 81 1 1 Sporadic BRCA2 2 Sporadic 0 BRCA2 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 38 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985312 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985312 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985312 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985312_241a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985312_sample_table.txt norm GSM985312_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 81 not specified not specified 1 1 not specified Sporadic BRCA2 2 Sporadic 0 not specified not specified BRCA2 postmenopausal EFO EFO_0002721 not specified not specified LumB 0 not specified 38 invasive ductal carcinoma EFO EFO_0000186 GSM985311 2 K043 Universal Human Reference RNA (Stratagene) 297a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985311 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985311 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985311 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985311_297a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985311_sample_table.txt norm GSM985311_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985311 1 K043 Breast tumor tissue 297a 63 1 1 Sporadic Sporadic 2 Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 30 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985311 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985311 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985311 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985311_297a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985311_sample_table.txt norm GSM985311_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 63 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 0 0 30 invasive ductal carcinoma EFO EFO_0000186 GSM985310 2 A170 Universal Human Reference RNA (Stratagene) 304a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985310 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985310 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985310 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985310_304a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985310_sample_table.txt norm GSM985310_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985310 1 A170 Breast tumor tissue 304a 72 1 1 Sporadic 3 BRCA1 0 0 postmenopausal EFO EFO_0002721 BRCA1 c.4987-?_5193+?del, Exon17-19, p.(Met1663_Glu1731del) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 17 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985310 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985310 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985310 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985310_304a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985310_sample_table.txt norm GSM985310_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 72 not specified not specified 1 1 not specified Sporadic not specified 3 BRCA1 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified BRCA1 c.4987-?_5193+?del, Exon17-19, p.(Met1663_Glu1731del) LumB 1 1 17 invasive ductal carcinoma EFO EFO_0000186 GSM985309 1 K150 Breast tumor tissue 302a 75 1 1 Sporadic Sporadic 2 Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 20 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985309 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985309 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985309 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985309_302a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985309_sample_table.txt norm GSM985309_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 75 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 0 0 20 invasive ductal carcinoma EFO EFO_0000186 GSM985309 2 K150 Universal Human Reference RNA (Stratagene) 302a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985309 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985309 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985309 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985309_302a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985309_sample_table.txt norm GSM985309_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985308 1 A142 Breast tumor tissue 300a 41 Sporadic 0 0 BRCA1 2 BRCA1 0 Premenopausal BRCA1 c.5089T>C, Exon18, p.(Cys1697Arg) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 22 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985308 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985308 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985308 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985308_300a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985308_sample_table.txt norm GSM985308_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 41 not specified Sporadic 0 0 not specified BRCA1 not specified 2 BRCA1 0 not specified not specified not specified Premenopausal not specified BRCA1 c.5089T>C, Exon18, p.(Cys1697Arg) basal EFO EFO_0001654 0 not specified 22 invasive ductal carcinoma EFO EFO_0000186 GSM985308 2 A142 Universal Human Reference RNA (Stratagene) 300a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985308 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985308 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985308 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985308_300a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985308_sample_table.txt norm GSM985308_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985307 2 K015 Universal Human Reference RNA (Stratagene) 293a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985307 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985307 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985307 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985307_293a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985307_sample_table.txt norm GSM985307_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985307 1 K015 Breast tumor tissue 293a 55 0 Sporadic BRCA2 3 Sporadic 1 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 26 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985307 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985307 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985307 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985307_293a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985307_sample_table.txt norm GSM985307_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 55 not specified not specified 0 not specified not specified Sporadic BRCA2 3 Sporadic 1 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified Her2 0 not specified 26 invasive ductal carcinoma EFO EFO_0000186 GSM985306 2 K022 Universal Human Reference RNA (Stratagene) 291a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985306 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985306 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985306 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985306_291a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985306_sample_table.txt norm GSM985306_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985306 1 K022 Breast tumor tissue 291a 56 1 1 Sporadic Sporadic 1 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 12 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985306 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985306 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985306 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985306_291a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985306_sample_table.txt norm GSM985306_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 56 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 12 invasive ductal carcinoma EFO EFO_0000186 GSM985305 1 K108 Breast tumor tissue 287a 64 1 1 Sporadic Sporadic Sporadic 0 Sporadic Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 1 80 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985305 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985305 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985305 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985305_287a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985305_sample_table.txt norm GSM985305_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 64 not specified not specified 1 1 not specified Sporadic Sporadic not specified Sporadic 0 not specified not specified Sporadic Perimenopausal not specified not specified LumB 0 1 80 invasive lobular carcinoma EFO EFO_0000553 GSM985305 2 K108 Universal Human Reference RNA (Stratagene) 287a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985305 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985305 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985305 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985305_287a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985305_sample_table.txt norm GSM985305_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985304 1 K063 Breast tumor tissue 286a 61 1 1 Sporadic Sporadic 1 Sporadic 0 Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 12 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985304 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985304 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985304 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985304_286a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985304_sample_table.txt norm GSM985304_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 61 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified not specified Perimenopausal not specified not specified LumA 1 1 12 invasive ductal carcinoma EFO EFO_0000186 GSM985304 2 K063 Universal Human Reference RNA (Stratagene) 286a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985304 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985304 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985304 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985304_286a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.3.zip P-GSE49481-1 ArrayExpress GSM985304_sample_table.txt norm GSM985304_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985303 2 K080 Universal Human Reference RNA (Stratagene) 285a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985303 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985303 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985303 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985303_285a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985303_sample_table.txt norm GSM985303_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985303 1 K080 Breast tumor tissue 285a 86 1 1 Sporadic BRCA2 Sporadic 0 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 20 Tubular Carcinoma EFO EFO_0000228 P-GSE49481-2 ArrayExpress GSM985303 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985303 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985303 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985303_285a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985303_sample_table.txt norm GSM985303_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 86 not specified not specified 1 1 not specified Sporadic BRCA2 not specified Sporadic 0 0 not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 1 1 20 Tubular Carcinoma EFO EFO_0000228 GSM985302 2 K155 Universal Human Reference RNA (Stratagene) 284a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985302 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985302 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985302 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985302_284a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985302_sample_table.txt norm GSM985302_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985302 1 K155 Breast tumor tissue 284a 61 1 1 Sporadic Sporadic 2 Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 45 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985302 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985302 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985302 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985302_284a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985302_sample_table.txt norm GSM985302_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 61 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 1 1 45 invasive ductal carcinoma EFO EFO_0000186 GSM985301 2 K006 Universal Human Reference RNA (Stratagene) 283a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985301 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985301 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985301 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985301_283a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985301_sample_table.txt norm GSM985301_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985301 1 K006 Breast tumor tissue 283a 68 0 0 Sporadic Sporadic 3 Sporadic 1 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 0 29 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985301 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985301 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985301 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985301_283a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985301_sample_table.txt norm GSM985301_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 68 not specified not specified 0 0 not specified Sporadic Sporadic 3 Sporadic 1 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified Her2 0 0 29 invasive ductal carcinoma EFO EFO_0000186 GSM985300 2 K037 Universal Human Reference RNA (Stratagene) 281a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985300 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985300 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985300 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985300_281a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985300_sample_table.txt norm GSM985300_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985300 1 K037 Breast tumor tissue 281a 42 1 1 Sporadic Sporadic Sporadic 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 28 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985300 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985300 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985300 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985300_281a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985300_sample_table.txt norm GSM985300_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 42 not specified not specified 1 1 not specified Sporadic Sporadic not specified Sporadic 0 not specified not specified not specified Premenopausal not specified not specified LumA 1 1 28 invasive lobular carcinoma EFO EFO_0000553 GSM985299 1 K153 Breast tumor tissue 279a 54 1 1 BRCA1 Sporadic 2 Sporadic 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 22 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985299 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985299 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985299 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985299_279a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985299_sample_table.txt norm GSM985299_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 54 not specified not specified 1 1 not specified BRCA1 Sporadic 2 Sporadic 0 not specified not specified not specified Premenopausal not specified not specified LumA 1 1 22 invasive ductal carcinoma EFO EFO_0000186 GSM985299 2 K153 Universal Human Reference RNA (Stratagene) 279a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985299 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985299 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985299 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985299_279a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985299_sample_table.txt norm GSM985299_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985298 1 K085 Breast tumor tissue 278a 55 Sporadic 0 0 BRCA1 Sporadic 3 Sporadic 0 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 24 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985298 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985298 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985298 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985298_278a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985298_sample_table.txt norm GSM985298_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 55 not specified Sporadic 0 0 not specified BRCA1 Sporadic 3 Sporadic 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified not specified basal EFO EFO_0001654 0 0 24 invasive ductal carcinoma EFO EFO_0000186 GSM985298 2 K085 Universal Human Reference RNA (Stratagene) 278a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985298 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985298 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985298 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985298_278a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985298_sample_table.txt norm GSM985298_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985297 2 K073 Universal Human Reference RNA (Stratagene) 276a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985297 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985297 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985297 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985297_276a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985297_sample_table.txt norm GSM985297_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985297 1 K073 Breast tumor tissue 276a 66 Sporadic 0 0 BRCA1 Sporadic 3 Sporadic 0 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 34 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985297 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985297 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985297 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985297_276a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985297_sample_table.txt norm GSM985297_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 66 not specified Sporadic 0 0 not specified BRCA1 Sporadic 3 Sporadic 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified not specified basal EFO EFO_0001654 0 0 34 invasive ductal carcinoma EFO EFO_0000186 GSM985296 2 K190 Universal Human Reference RNA (Stratagene) 274a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985296 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985296 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985296 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985296_274a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985296_sample_table.txt norm GSM985296_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985296 1 K190 Breast tumor tissue 274a 59 1 1 Sporadic Sporadic 2 Sporadic 0 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985296 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985296 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985296 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985296_274a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985296_sample_table.txt norm GSM985296_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 59 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 15 invasive ductal carcinoma EFO EFO_0000186 GSM985295 1 A128 Breast tumor tissue 273a 38 1 1 Sporadic 3 BRCA1 1 1 Premenopausal BRCA1 c.4389C>A, Exon14, p.(Tyr1463*) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 1 23 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985295 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985295 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985295 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985295_273a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985295_sample_table.txt norm GSM985295_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 38 not specified not specified 1 1 not specified Sporadic not specified 3 BRCA1 1 1 not specified not specified Premenopausal not specified BRCA1 c.4389C>A, Exon14, p.(Tyr1463*) Her2 1 not specified 23 invasive ductal carcinoma EFO EFO_0000186 GSM985295 2 A128 Universal Human Reference RNA (Stratagene) 273a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985295 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985295 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985295 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985295_273a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985295_sample_table.txt norm GSM985295_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985294 2 A002 Universal Human Reference RNA (Stratagene) 269a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985294 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985294 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985294 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985294_269a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985294_sample_table.txt norm GSM985294_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985294 1 A002 Breast tumor tissue 269a 36 BRCA1 0 0 BRCA1 3 BRCA1 0 0 Premenopausal BRCA1 c.1556delA, Exon11, p.(Lys519Argfs*13) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 28 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985294 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985294 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985294 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985294_269a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985294_sample_table.txt norm GSM985294_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 36 not specified BRCA1 0 0 not specified BRCA1 not specified 3 BRCA1 0 0 not specified not specified Premenopausal not specified BRCA1 c.1556delA, Exon11, p.(Lys519Argfs*13) basal EFO EFO_0001654 0 0 28 invasive ductal carcinoma EFO EFO_0000186 GSM985293 2 A171 Universal Human Reference RNA (Stratagene) 267a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985293 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985293 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985293 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985293_267a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985293_sample_table.txt norm GSM985293_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985293 1 A171 Breast tumor tissue 267a 53 1 1 Sporadic 2 BRCA2 0 0 postmenopausal EFO EFO_0002721 BRCA2 c.8575delC, Exon20, p.(Gln2859Lysfs*4) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 35 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985293 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985293 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985293 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985293_267a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985293_sample_table.txt norm GSM985293_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 53 not specified not specified 1 1 not specified not specified Sporadic 2 BRCA2 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified BRCA2 c.8575delC, Exon20, p.(Gln2859Lysfs*4) LumA 1 1 35 invasive ductal carcinoma EFO EFO_0000186 GSM985292 2 A109 Universal Human Reference RNA (Stratagene) 266a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985292 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985292 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985292 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985292_266a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985292_sample_table.txt norm GSM985292_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985292 1 A109 Breast tumor tissue 266a 31 1 0 BRCA2 2 BRCA2 0 BRCA2 Premenopausal BRCA2 c.1310_1313delAAGA, Exon10, p.(Lys437Ilefs*22) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 0 60 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985292 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985292 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985292 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985292_266a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985292_sample_table.txt norm GSM985292_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 31 not specified not specified 1 0 not specified not specified BRCA2 2 BRCA2 0 not specified not specified BRCA2 Premenopausal not specified BRCA2 c.1310_1313delAAGA, Exon10, p.(Lys437Ilefs*22) LumB 1 0 60 invasive ductal carcinoma EFO EFO_0000186 GSM985291 2 K018 Universal Human Reference RNA (Stratagene) 265a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985291 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985291 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985291 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985291_265a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985291_sample_table.txt norm GSM985291_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985291 1 K018 Breast tumor tissue 265a 60 BRCA1 0 0 BRCA1 BRCA2 3 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 60 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985291 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985291 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985291 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985291_265a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985291_sample_table.txt norm GSM985291_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 60 not specified BRCA1 0 0 not specified BRCA1 BRCA2 3 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified basal EFO EFO_0001654 0 0 60 invasive ductal carcinoma EFO EFO_0000186 GSM985290 1 K014 Breast tumor tissue 264a 52 1 1 BRCA1 Sporadic 3 Sporadic 1 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 1 19 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985290 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985290 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985290 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985290_264a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985290_sample_table.txt norm GSM985290_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 52 not specified not specified 1 1 not specified BRCA1 Sporadic 3 Sporadic 1 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified Her2 0 1 19 invasive ductal carcinoma EFO EFO_0000186 GSM985290 2 K014 Universal Human Reference RNA (Stratagene) 264a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985290 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985290 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985290 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985290_264a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985290_sample_table.txt norm GSM985290_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985289 2 K103 Universal Human Reference RNA (Stratagene) 263a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985289 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985289 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985289 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985289_263a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985289_sample_table.txt norm GSM985289_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985289 1 K103 Breast tumor tissue 263a 78 1 1 Sporadic Sporadic 2 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 0 0 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985289 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985289 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985289 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985289_263a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985289_sample_table.txt norm GSM985289_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 78 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 0 0 15 invasive ductal carcinoma EFO EFO_0000186 GSM985288 1 A136 Breast tumor tissue 262a 31 BRCA1 0 0 BRCA1 3 BRCA1 0 0 Premenopausal BRCA1 c.5266dupC, Exon20, p.(Gln1756Profs*74) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 29 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985288 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985288 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985288 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985288_262a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985288_sample_table.txt norm GSM985288_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 31 not specified BRCA1 0 0 not specified BRCA1 not specified 3 BRCA1 0 0 not specified not specified Premenopausal not specified BRCA1 c.5266dupC, Exon20, p.(Gln1756Profs*74) basal EFO EFO_0001654 0 0 29 invasive ductal carcinoma EFO EFO_0000186 GSM985288 2 A136 Universal Human Reference RNA (Stratagene) 262a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985288 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985288 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985288 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985288_262a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985288_sample_table.txt norm GSM985288_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985287 2 K052 Universal Human Reference RNA (Stratagene) 256a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985287 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985287 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985287 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985287_256a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985287_sample_table.txt norm GSM985287_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985287 1 K052 Breast tumor tissue 256a 58 1 1 Sporadic Sporadic 3 Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 0 35 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985287 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985287 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985287 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985287_256a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985287_sample_table.txt norm GSM985287_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 58 not specified not specified 1 1 not specified Sporadic Sporadic 3 Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 1 0 35 invasive ductal carcinoma EFO EFO_0000186 GSM985286 1 A010 Breast tumor tissue 255a 34 1 1 BRCA2 2 BRCA2 0 BRCA2 Premenopausal BRCA2 c.2808_2811delACAA, Exon11, p.(Ala938Profs*21) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 0 60 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985286 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985286 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985286 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985286_255a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985286_sample_table.txt norm GSM985286_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 34 not specified not specified 1 1 not specified not specified BRCA2 2 BRCA2 0 not specified not specified BRCA2 Premenopausal not specified BRCA2 c.2808_2811delACAA, Exon11, p.(Ala938Profs*21) LumB 1 0 60 invasive ductal carcinoma EFO EFO_0000186 GSM985286 2 A010 Universal Human Reference RNA (Stratagene) 255a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985286 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985286 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985286 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985286_255a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985286_sample_table.txt norm GSM985286_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985285 2 K007 Universal Human Reference RNA (Stratagene) 254a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985285 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985285 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985285 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985285_254a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985285_sample_table.txt norm GSM985285_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985285 1 K007 Breast tumor tissue 254a 77 0 1 Sporadic Sporadic 3 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 1 30 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985285 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985285 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985285 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985285_254a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985285_sample_table.txt norm GSM985285_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 77 not specified not specified 0 1 not specified Sporadic Sporadic 3 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified Her2 0 1 30 invasive ductal carcinoma EFO EFO_0000186 GSM985284 1 K176 Breast tumor tissue 252a 69 1 1 Sporadic BRCA2 1 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 0 0 25 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985284 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985284 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985284 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985284_252a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985284_sample_table.txt norm GSM985284_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 69 not specified not specified 1 1 not specified Sporadic BRCA2 1 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 0 0 25 invasive ductal carcinoma EFO EFO_0000186 GSM985284 2 K176 Universal Human Reference RNA (Stratagene) 252a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985284 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985284 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985284 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985284_252a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985284_sample_table.txt norm GSM985284_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985283 2 K172 Universal Human Reference RNA (Stratagene) 251a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985283 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985283 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985283 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985283_251a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985283_sample_table.txt norm GSM985283_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985283 1 K172 Breast tumor tissue 251a 57 1 Sporadic Sporadic 1 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 34 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985283 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985283 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985283 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985283_251a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985283_sample_table.txt norm GSM985283_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 57 not specified not specified 1 not specified not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 not specified 34 invasive ductal carcinoma EFO EFO_0000186 GSM985282 2 K004 Universal Human Reference RNA (Stratagene) 248a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985282 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985282 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985282 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985282_248a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985282_sample_table.txt norm GSM985282_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985282 1 K004 Breast tumor tissue 248a 79 0 1 Sporadic Sporadic 2 Sporadic 1 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 0 12 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985282 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985282 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985282 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985282_248a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985282_sample_table.txt norm GSM985282_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 79 not specified not specified 0 1 not specified Sporadic Sporadic 2 Sporadic 1 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified Her2 0 0 12 invasive ductal carcinoma EFO EFO_0000186 GSM985281 2 K055 Universal Human Reference RNA (Stratagene) 247a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985281 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985281 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985281 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985281_247a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985281_sample_table.txt norm GSM985281_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985281 1 K055 Breast tumor tissue 247a 54 1 1 Sporadic Sporadic Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 22 Medullary carcinoma P-GSE49481-2 ArrayExpress GSM985281 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985281 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985281 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985281_247a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985281_sample_table.txt norm GSM985281_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 54 not specified not specified 1 1 not specified Sporadic Sporadic not specified Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 0 0 22 Medullary carcinoma GSM985280 2 K166 Universal Human Reference RNA (Stratagene) 246a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985280 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985280 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985280 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985280_246a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985280_sample_table.txt norm GSM985280_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985280 1 K166 Breast tumor tissue 246a 52 1 1 Sporadic Sporadic 1 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 18 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985280 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985280 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985280 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985280_246a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985280_sample_table.txt norm GSM985280_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 52 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 18 invasive ductal carcinoma EFO EFO_0000186 GSM985279 2 K028 Universal Human Reference RNA (Stratagene) 243a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985279 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985279 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985279 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985279_243a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985279_sample_table.txt norm GSM985279_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985279 1 K028 Breast tumor tissue 243a 57 1 1 Sporadic Sporadic 2 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 8 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985279 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985279 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985279 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985279_243a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985279_sample_table.txt norm GSM985279_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 57 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 8 invasive ductal carcinoma EFO EFO_0000186 GSM985278 1 A017 Breast tumor tissue 242a 37 BRCA1 0 BRCA1 BRCA1 0 BRCA1 c.2476delA, Exon11, p.(Thr826Glnfs*20) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 P-GSE49481-2 ArrayExpress GSM985278 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985278 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985278 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985278_242a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985278_sample_table.txt norm GSM985278_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 37 not specified BRCA1 0 not specified not specified BRCA1 not specified not specified BRCA1 0 not specified not specified not specified not specified not specified BRCA1 c.2476delA, Exon11, p.(Thr826Glnfs*20) basal EFO EFO_0001654 0 not specified not specified not specified GSM985278 2 A017 Universal Human Reference RNA (Stratagene) 242a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985278 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985278 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985278 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985278_242a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985278_sample_table.txt norm GSM985278_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985277 2 K013 Universal Human Reference RNA (Stratagene) 240a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985277 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985277 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985277 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985277_240a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985277_sample_table.txt norm GSM985277_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985277 1 K013 Breast tumor tissue 240a 69 1 1 BRCA1 Sporadic Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 35 Other P-GSE49481-2 ArrayExpress GSM985277 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985277 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985277 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985277_240a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985277_sample_table.txt norm GSM985277_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 69 not specified not specified 1 1 not specified BRCA1 Sporadic not specified Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 1 1 35 Other GSM985276 1 K191 Breast tumor tissue 238a 48 1 1 Sporadic Sporadic 1 Sporadic 0 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 8 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985276 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985276 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985276 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985276_238a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985276_sample_table.txt norm GSM985276_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 48 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 0 not specified not specified Premenopausal not specified not specified LumA 1 1 8 invasive lobular carcinoma EFO EFO_0000553 GSM985276 2 K191 Universal Human Reference RNA (Stratagene) 238a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985276 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985276 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985276 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985276_238a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985276_sample_table.txt norm GSM985276_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985275 1 K154 Breast tumor tissue 237a 88 1 1 BRCA1 Sporadic 3 Sporadic 1 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 130 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985275 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985275 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985275 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985275_237a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985275_sample_table.txt norm GSM985275_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 88 not specified not specified 1 1 not specified BRCA1 Sporadic 3 Sporadic 1 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 0 0 130 invasive ductal carcinoma EFO EFO_0000186 GSM985275 2 K154 Universal Human Reference RNA (Stratagene) 237a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985275 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985275 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985275 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985275_237a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985275_sample_table.txt norm GSM985275_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985274 1 K079 Breast tumor tissue 234a 43 1 1 Sporadic Sporadic 3 Sporadic 0 0 Sporadic Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 10 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985274 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985274 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985274 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985274_234a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985274_sample_table.txt norm GSM985274_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 43 not specified not specified 1 1 not specified Sporadic Sporadic 3 Sporadic 0 0 not specified Sporadic Premenopausal not specified not specified LumB 1 1 10 invasive ductal carcinoma EFO EFO_0000186 GSM985274 2 K079 Universal Human Reference RNA (Stratagene) 234a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985274 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985274 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985274 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985274_234a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.4.zip P-GSE49481-1 ArrayExpress GSM985274_sample_table.txt norm GSM985274_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985273 2 K038 Universal Human Reference RNA (Stratagene) 233a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985273 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985273 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985273 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985273_233a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985273_sample_table.txt norm GSM985273_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985273 1 K038 Breast tumor tissue 233a 85 1 1 Sporadic Sporadic 2 Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985273 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985273 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985273 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985273_233a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985273_sample_table.txt norm GSM985273_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 85 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 1 1 15 invasive ductal carcinoma EFO EFO_0000186 GSM985272 2 A112 Universal Human Reference RNA (Stratagene) 231a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985272 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985272 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985272 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985272_231a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985272_sample_table.txt norm GSM985272_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985272 1 A112 Breast tumor tissue 231a 42 Sporadic 1 0 BRCA1 3 BRCA1 0 Premenopausal BRCA1 c.5213G>A, Exon20, p.(Gly1738Glu) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 40 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985272 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985272 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985272 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985272_231a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985272_sample_table.txt norm GSM985272_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 42 not specified Sporadic 1 0 not specified BRCA1 not specified 3 BRCA1 0 not specified not specified not specified Premenopausal not specified BRCA1 c.5213G>A, Exon20, p.(Gly1738Glu) basal EFO EFO_0001654 0 0 40 invasive ductal carcinoma EFO EFO_0000186 GSM985271 2 K081 Universal Human Reference RNA (Stratagene) 230a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985271 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985271 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985271 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985271_230a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985271_sample_table.txt norm GSM985271_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985271 1 K081 Breast tumor tissue 230a 39 1 1 Sporadic Sporadic 2 Sporadic 1 1 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 1 1 21 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985271 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985271 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985271 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985271_230a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985271_sample_table.txt norm GSM985271_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 39 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 1 1 not specified not specified Premenopausal not specified not specified Her2 1 1 21 invasive ductal carcinoma EFO EFO_0000186 GSM985270 2 K091 Universal Human Reference RNA (Stratagene) 229a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985270 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985270 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985270 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985270_229a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985270_sample_table.txt norm GSM985270_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985270 1 K091 Breast tumor tissue 229a 74 1 1 BRCA1 Sporadic 3 Sporadic 0 1 BRCA2 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 12 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985270 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985270 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985270 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985270_229a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985270_sample_table.txt norm GSM985270_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 74 not specified not specified 1 1 not specified BRCA1 Sporadic 3 Sporadic 0 1 not specified BRCA2 postmenopausal EFO EFO_0002721 not specified not specified LumB 0 0 12 invasive ductal carcinoma EFO EFO_0000186 GSM985269 2 K139 Universal Human Reference RNA (Stratagene) 332a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985269 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985269 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985269 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985269_332a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985269_sample_table.txt norm GSM985269_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985269 1 K139 Breast tumor tissue 332a 75 1 1 Sporadic Sporadic 2 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 0 14 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985269 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985269 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985269 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985269_332a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985269_sample_table.txt norm GSM985269_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 75 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 0 14 invasive ductal carcinoma EFO EFO_0000186 GSM985268 2 K171 Universal Human Reference RNA (Stratagene) 330a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985268 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985268 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985268 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985268_330a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985268_sample_table.txt norm GSM985268_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985268 1 K171 Breast tumor tissue 330a 83 1 1 Sporadic Sporadic 1 Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 16 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985268 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985268 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985268 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985268_330a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985268_sample_table.txt norm GSM985268_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 83 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 1 1 16 invasive ductal carcinoma EFO EFO_0000186 GSM985267 2 A005 Universal Human Reference RNA (Stratagene) 327a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985267 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985267 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985267 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985267_327a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985267_sample_table.txt norm GSM985267_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985267 1 A005 Breast tumor tissue 327a 50 0 0 BRCA2 2 BRCA2 0 postmenopausal EFO EFO_0002721 BRCA2 c.1813delA, Exon10, p.(Ile605Tyrfs*9) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 14 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985267 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985267 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985267 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985267_327a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985267_sample_table.txt norm GSM985267_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 50 not specified not specified 0 0 not specified not specified BRCA2 2 BRCA2 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified BRCA2 c.1813delA, Exon10, p.(Ile605Tyrfs*9) basal EFO EFO_0001654 0 0 14 invasive ductal carcinoma EFO EFO_0000186 GSM985266 2 A014 Universal Human Reference RNA (Stratagene) 323a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985266 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985266 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985266 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985266_323a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985266_sample_table.txt norm GSM985266_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985266 1 A014 Breast tumor tissue 323a 40 Sporadic 0 0 BRCA1 3 BRCA1 0 Premenopausal BRCA1 c.5266dupC, Exon20, p.(Gln1756Profs*74) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 18 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985266 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985266 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985266 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985266_323a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985266_sample_table.txt norm GSM985266_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 40 not specified Sporadic 0 0 not specified BRCA1 not specified 3 BRCA1 0 not specified not specified not specified Premenopausal not specified BRCA1 c.5266dupC, Exon20, p.(Gln1756Profs*74) basal EFO EFO_0001654 0 0 18 invasive ductal carcinoma EFO EFO_0000186 GSM985265 2 K178 Universal Human Reference RNA (Stratagene) 223a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985265 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985265 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985265 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985265_223a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985265_sample_table.txt norm GSM985265_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985265 1 K178 Breast tumor tissue 223a 66 0 0 Sporadic Sporadic 3 Sporadic 1 1 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 0 26 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985265 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985265 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985265 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985265_223a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985265_sample_table.txt norm GSM985265_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 66 not specified not specified 0 0 not specified Sporadic Sporadic 3 Sporadic 1 1 not specified not specified postmenopausal EFO EFO_0002721 not specified not specified Her2 0 0 26 invasive ductal carcinoma EFO EFO_0000186 GSM985264 2 K182 Universal Human Reference RNA (Stratagene) 221a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985264 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985264 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985264 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985264_221a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985264_sample_table.txt norm GSM985264_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985264 1 K182 Breast tumor tissue 221a 68 1 1 Sporadic BRCA2 1 Sporadic 0 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 0 18 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985264 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985264 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985264 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985264_221a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985264_sample_table.txt norm GSM985264_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 68 not specified not specified 1 1 not specified Sporadic BRCA2 1 Sporadic 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 0 18 invasive ductal carcinoma EFO EFO_0000186 GSM985263 1 K086 Breast tumor tissue 220a 64 1 1 Sporadic Sporadic 2 Sporadic 0 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 9 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985263 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985263 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985263 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985263_220a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985263_sample_table.txt norm GSM985263_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 64 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 0 not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 0 0 9 invasive ductal carcinoma EFO EFO_0000186 GSM985263 2 K086 Universal Human Reference RNA (Stratagene) 220a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985263 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985263 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985263 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985263_220a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985263_sample_table.txt norm GSM985263_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985262 2 K083 Universal Human Reference RNA (Stratagene) 218a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985262 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985262 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985262 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985262_218a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985262_sample_table.txt norm GSM985262_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985262 1 K083 Breast tumor tissue 218a 43 1 1 Sporadic BRCA2 3 Sporadic 0 BRCA2 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985262 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985262 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985262 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985262_218a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985262_sample_table.txt norm GSM985262_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 43 not specified not specified 1 1 not specified Sporadic BRCA2 3 Sporadic 0 not specified not specified BRCA2 Premenopausal not specified not specified LumB 1 1 15 invasive ductal carcinoma EFO EFO_0000186 GSM985261 1 K090 Breast tumor tissue 217a 54 1 1 Sporadic Sporadic 1 Sporadic 0 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 24 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985261 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985261 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985261 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985261_217a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985261_sample_table.txt norm GSM985261_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 54 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 24 invasive ductal carcinoma EFO EFO_0000186 GSM985261 2 K090 Universal Human Reference RNA (Stratagene) 217a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985261 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985261 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985261 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985261_217a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985261_sample_table.txt norm GSM985261_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985260 2 A086 Universal Human Reference RNA (Stratagene) 216a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985260 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985260 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985260 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985260_216a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985260_sample_table.txt norm GSM985260_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985260 1 A086 Breast tumor tissue 216a 28 1 1 BRCA1 1 BRCA1 1 Premenopausal BRCA1 c.2475delC, Exon11, p.(Asp825Glufs*21) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 30 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985260 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985260 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985260 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985260_216a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985260_sample_table.txt norm GSM985260_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 28 not specified not specified 1 1 not specified BRCA1 not specified 1 BRCA1 1 not specified not specified not specified Premenopausal not specified BRCA1 c.2475delC, Exon11, p.(Asp825Glufs*21) LumB 1 1 30 invasive ductal carcinoma EFO EFO_0000186 GSM985259 2 K162 Universal Human Reference RNA (Stratagene) 213a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985259 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985259 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985259 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985259_213a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985259_sample_table.txt norm GSM985259_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985259 1 K162 Breast tumor tissue 213a 51 1 1 Sporadic Sporadic 1 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985259 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985259 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985259 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985259_213a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985259_sample_table.txt norm GSM985259_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 51 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 15 invasive ductal carcinoma EFO EFO_0000186 GSM985258 1 A018 Breast tumor tissue 212a 25 BRCA1 0 1 BRCA1 2 BRCA1 0 0 Premenopausal BRCA1 c.181T>G, Exon5, p.(Cys61Gly) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 8 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985258 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985258 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985258 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985258_212a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985258_sample_table.txt norm GSM985258_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 25 not specified BRCA1 0 1 not specified BRCA1 not specified 2 BRCA1 0 0 not specified not specified Premenopausal not specified BRCA1 c.181T>G, Exon5, p.(Cys61Gly) basal EFO EFO_0001654 0 0 8 invasive ductal carcinoma EFO EFO_0000186 GSM985258 2 A018 Universal Human Reference RNA (Stratagene) 212a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985258 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985258 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985258 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985258_212a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985258_sample_table.txt norm GSM985258_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985257 1 A095 Breast tumor tissue 210a 37 1 0 BRCA2 3 BRCA2 0 BRCA2 Premenopausal BRCA2 c.6490_6492delinsGACT, Exon11, p.(Gln2164Aspfs*12) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 0 25 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985257 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985257 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985257 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985257_210a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985257_sample_table.txt norm GSM985257_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 37 not specified not specified 1 0 not specified not specified BRCA2 3 BRCA2 0 not specified not specified BRCA2 Premenopausal not specified BRCA2 c.6490_6492delinsGACT, Exon11, p.(Gln2164Aspfs*12) LumB 1 0 25 invasive ductal carcinoma EFO EFO_0000186 GSM985257 2 A095 Universal Human Reference RNA (Stratagene) 210a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985257 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985257 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985257 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985257_210a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985257_sample_table.txt norm GSM985257_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985256 1 A163 Breast tumor tissue 206a 66 1 1 BRCA2 3 BRCA2 0 BRCA2 Perimenopausal BRCA2 c.3530_3533delACAG, Exon11, p.(Asp1177Alafs*19) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 19 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985256 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985256 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985256 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985256_206a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985256_sample_table.txt norm GSM985256_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 66 not specified not specified 1 1 not specified not specified BRCA2 3 BRCA2 0 not specified not specified BRCA2 Perimenopausal not specified BRCA2 c.3530_3533delACAG, Exon11, p.(Asp1177Alafs*19) LumB 1 1 19 invasive ductal carcinoma EFO EFO_0000186 GSM985256 2 A163 Universal Human Reference RNA (Stratagene) 206a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985256 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985256 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985256 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985256_206a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985256_sample_table.txt norm GSM985256_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985255 1 K177 Breast tumor tissue 205a 87 Sporadic 0 1 BRCA1 Sporadic 1 Sporadic 0 Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 1 16 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985255 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985255 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985255 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985255_205a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985255_sample_table.txt norm GSM985255_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 87 not specified Sporadic 0 1 not specified BRCA1 Sporadic 1 Sporadic 0 not specified not specified not specified Perimenopausal not specified not specified basal EFO EFO_0001654 0 1 16 invasive ductal carcinoma EFO EFO_0000186 GSM985255 2 K177 Universal Human Reference RNA (Stratagene) 205a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985255 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985255 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985255 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985255_205a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985255_sample_table.txt norm GSM985255_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985254 2 A173 Universal Human Reference RNA (Stratagene) 203a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985254 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985254 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985254 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985254_203a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985254_sample_table.txt norm GSM985254_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985254 1 A173 Breast tumor tissue 203a 63 1 BRCA2 BRCA2 0 BRCA2 BRCA2 c.8575delC, Exon20, p.(Gln2859Lysfs*4) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 P-GSE49481-2 ArrayExpress GSM985254 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985254 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985254 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985254_203a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985254_sample_table.txt norm GSM985254_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 63 not specified not specified 1 not specified not specified not specified BRCA2 not specified BRCA2 0 not specified not specified BRCA2 not specified not specified BRCA2 c.8575delC, Exon20, p.(Gln2859Lysfs*4) LumB 0 not specified not specified not specified GSM985253 2 K002 Universal Human Reference RNA (Stratagene) 201a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985253 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985253 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985253 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985253_201a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985253_sample_table.txt norm GSM985253_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985253 1 K002 Breast tumor tissue 201a 61 0 0 BRCA1 Sporadic 2 Sporadic 1 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 0 25 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985253 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985253 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985253 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985253_201a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985253_sample_table.txt norm GSM985253_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 61 not specified not specified 0 0 not specified BRCA1 Sporadic 2 Sporadic 1 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified Her2 0 0 25 invasive ductal carcinoma EFO EFO_0000186 GSM985252 1 K005 Breast tumor tissue 198a 53 Sporadic 0 1 BRCA1 Sporadic 3 Sporadic 1 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 1 18 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985252 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985252 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985252 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985252_198a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985252_sample_table.txt norm GSM985252_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 53 not specified Sporadic 0 1 not specified BRCA1 Sporadic 3 Sporadic 1 not specified not specified not specified Premenopausal not specified not specified basal EFO EFO_0001654 0 1 18 invasive ductal carcinoma EFO EFO_0000186 GSM985252 2 K005 Universal Human Reference RNA (Stratagene) 198a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985252 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985252 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985252 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985252_198a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985252_sample_table.txt norm GSM985252_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985251 1 A004 Breast tumor tissue 197a 41 1 1 BRCA2 2 BRCA2 0 BRCA2 Premenopausal BRCA2 c.2830A>T, Exon11, p.(Lys944*) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 19 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985251 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985251 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985251 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985251_197a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985251_sample_table.txt norm GSM985251_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 41 not specified not specified 1 1 not specified not specified BRCA2 2 BRCA2 0 not specified not specified BRCA2 Premenopausal not specified BRCA2 c.2830A>T, Exon11, p.(Lys944*) LumB 0 0 19 invasive ductal carcinoma EFO EFO_0000186 GSM985251 2 A004 Universal Human Reference RNA (Stratagene) 197a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985251 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985251 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985251 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985251_197a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985251_sample_table.txt norm GSM985251_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985250 2 A106 Universal Human Reference RNA (Stratagene) 194a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985250 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985250 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985250 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985250_194a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985250_sample_table.txt norm GSM985250_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985250 1 A106 Breast tumor tissue 194a 60 1 0 BRCA2 3 BRCA2 0 BRCA2 postmenopausal EFO EFO_0002721 BRCA2 c.9015delA, Exon23, p.(Arg3005Serfs*23) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 18 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985250 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985250 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985250 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985250_194a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985250_sample_table.txt norm GSM985250_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 60 not specified not specified 1 0 not specified not specified BRCA2 3 BRCA2 0 not specified not specified BRCA2 postmenopausal EFO EFO_0002721 not specified BRCA2 c.9015delA, Exon23, p.(Arg3005Serfs*23) LumB 0 0 18 invasive ductal carcinoma EFO EFO_0000186 GSM985249 1 K179 Breast tumor tissue 193a 66 1 1 Sporadic Sporadic 2 Sporadic 0 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 18 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985249 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985249 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985249 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985249_193a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985249_sample_table.txt norm GSM985249_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 66 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 0 not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 0 0 18 invasive ductal carcinoma EFO EFO_0000186 GSM985249 2 K179 Universal Human Reference RNA (Stratagene) 193a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985249 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985249 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985249 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985249_193a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985249_sample_table.txt norm GSM985249_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985248 2 K070 Universal Human Reference RNA (Stratagene) 189a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985248 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985248 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985248 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985248_189a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985248_sample_table.txt norm GSM985248_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985248 1 K070 Breast tumor tissue 189a 51 1 1 Sporadic Sporadic 2 Sporadic 0 Other Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 12 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985248 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985248 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985248 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985248_189a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985248_sample_table.txt norm GSM985248_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 51 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified not specified Other not specified not specified LumA 1 1 12 invasive lobular carcinoma EFO EFO_0000553 GSM985247 1 K183 Breast tumor tissue 187a 27 1 1 Sporadic Sporadic Sporadic 0 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 14 Tubular Carcinoma EFO EFO_0000228 P-GSE49481-2 ArrayExpress GSM985247 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985247 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985247 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985247_187a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985247_sample_table.txt norm GSM985247_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 27 not specified not specified 1 1 not specified Sporadic Sporadic not specified Sporadic 0 0 not specified not specified Premenopausal not specified not specified LumA 1 1 14 Tubular Carcinoma EFO EFO_0000228 GSM985247 2 K183 Universal Human Reference RNA (Stratagene) 187a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985247 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985247 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985247 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985247_187a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985247_sample_table.txt norm GSM985247_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985246 2 A138 Universal Human Reference RNA (Stratagene) 186a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985246 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985246 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985246 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985246_186a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985246_sample_table.txt norm GSM985246_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985246 1 A138 Breast tumor tissue 186a 55 BRCA1 0 0 BRCA1 3 BRCA1 0 0 postmenopausal EFO EFO_0002721 BRCA1 c.2475delC, Exon11, p.(Asp825Glufs*21) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 27 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985246 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985246 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985246 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985246_186a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985246_sample_table.txt norm GSM985246_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 55 not specified BRCA1 0 0 not specified BRCA1 not specified 3 BRCA1 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified BRCA1 c.2475delC, Exon11, p.(Asp825Glufs*21) basal EFO EFO_0001654 0 0 27 invasive ductal carcinoma EFO EFO_0000186 GSM985245 1 A145 Breast tumor tissue 184a 60 BRCA1 0 1 BRCA1 2 BRCA1 0 postmenopausal EFO EFO_0002721 BRCA1 c.5153-?_5193+?del, Exon19, p.(Trp1718Serfs*2) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 10 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985245 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985245 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985245 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985245_184a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985245_sample_table.txt norm GSM985245_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 60 not specified BRCA1 0 1 not specified BRCA1 not specified 2 BRCA1 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified BRCA1 c.5153-?_5193+?del, Exon19, p.(Trp1718Serfs*2) basal EFO EFO_0001654 0 0 10 invasive ductal carcinoma EFO EFO_0000186 GSM985245 2 A145 Universal Human Reference RNA (Stratagene) 184a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985245 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985245 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985245 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985245_184a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985245_sample_table.txt norm GSM985245_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985244 2 A150 Universal Human Reference RNA (Stratagene) 183a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985244 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985244 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985244 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985244_183a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985244_sample_table.txt norm GSM985244_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985244 1 A150 Breast tumor tissue 183a 36 1 1 BRCA2 2 BRCA2 0 BRCA2 Premenopausal BRCA2 c.6486_6489delACAA, Exon11, p.(Lys2162Asnfs*5) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985244 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985244 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985244 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985244_183a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.5.zip P-GSE49481-1 ArrayExpress GSM985244_sample_table.txt norm GSM985244_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 36 not specified not specified 1 1 not specified not specified BRCA2 2 BRCA2 0 not specified not specified BRCA2 Premenopausal not specified BRCA2 c.6486_6489delACAA, Exon11, p.(Lys2162Asnfs*5) LumB 1 1 15 invasive ductal carcinoma EFO EFO_0000186 GSM985243 1 K078 Breast tumor tissue 181a 60 1 1 Sporadic Sporadic 2 Sporadic 0 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 47 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985243 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985243 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985243 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985243_181a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985243_sample_table.txt norm GSM985243_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 60 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 47 invasive ductal carcinoma EFO EFO_0000186 GSM985243 2 K078 Universal Human Reference RNA (Stratagene) 181a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985243 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985243 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985243 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985243_181a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985243_sample_table.txt norm GSM985243_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985242 1 K020 Breast tumor tissue 179a 48 1 1 Sporadic Sporadic 2 Sporadic 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 25 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985242 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985242 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985242 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985242_179a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985242_sample_table.txt norm GSM985242_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 48 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified not specified Premenopausal not specified not specified LumA 1 1 25 invasive ductal carcinoma EFO EFO_0000186 GSM985242 2 K020 Universal Human Reference RNA (Stratagene) 179a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985242 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985242 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985242 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985242_179a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985242_sample_table.txt norm GSM985242_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985241 2 A108 Universal Human Reference RNA (Stratagene) 175a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985241 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985241 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985241 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985241_175a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985241_sample_table.txt norm GSM985241_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985241 1 A108 Breast tumor tissue 175a 45 1 1 BRCA2 2 BRCA2 0 BRCA2 Premenopausal BRCA2 c.6486_6489delACAA, Exon11, p.(Lys2162Asnfs*5) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 28 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985241 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985241 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985241 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985241_175a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985241_sample_table.txt norm GSM985241_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 45 not specified not specified 1 1 not specified not specified BRCA2 2 BRCA2 0 not specified not specified BRCA2 Premenopausal not specified BRCA2 c.6486_6489delACAA, Exon11, p.(Lys2162Asnfs*5) LumB 1 1 28 invasive ductal carcinoma EFO EFO_0000186 GSM985240 2 A129 Universal Human Reference RNA (Stratagene) 173a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985240 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985240 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985240 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985240_173a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985240_sample_table.txt norm GSM985240_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985240 1 A129 Breast tumor tissue 173a 52 1 1 Sporadic 1 BRCA1 0 postmenopausal EFO EFO_0002721 BRCA1 c.115T>G, Exon3, p.(Cys39Gly) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985240 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985240 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985240 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985240_173a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985240_sample_table.txt norm GSM985240_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 52 not specified not specified 1 1 not specified Sporadic not specified 1 BRCA1 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified BRCA1 c.115T>G, Exon3, p.(Cys39Gly) LumB 1 not specified 15 invasive ductal carcinoma EFO EFO_0000186 GSM985239 1 K082 Breast tumor tissue 172a 60 1 1 Sporadic Sporadic 2 Sporadic 0 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 19 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985239 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985239 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985239 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985239_172a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985239_sample_table.txt norm GSM985239_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 60 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 0 not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 1 1 19 invasive ductal carcinoma EFO EFO_0000186 GSM985239 2 K082 Universal Human Reference RNA (Stratagene) 172a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985239 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985239 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985239 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985239_172a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985239_sample_table.txt norm GSM985239_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985238 2 K034 Universal Human Reference RNA (Stratagene) 170a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985238 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985238 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985238 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985238_170a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985238_sample_table.txt norm GSM985238_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985238 1 K034 Breast tumor tissue 170a 54 1 1 Sporadic Sporadic 1 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 0 8 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985238 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985238 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985238 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985238_170a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985238_sample_table.txt norm GSM985238_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 54 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 0 8 invasive ductal carcinoma EFO EFO_0000186 GSM985237 2 K071 Universal Human Reference RNA (Stratagene) 169a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985237 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985237 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985237 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985237_169a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985237_sample_table.txt norm GSM985237_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985237 1 K071 Breast tumor tissue 169a 50 1 1 Sporadic Sporadic 1 Sporadic 0 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 27 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985237 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985237 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985237 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985237_169a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985237_sample_table.txt norm GSM985237_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 50 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 0 not specified not specified Premenopausal not specified not specified LumA 1 1 27 invasive ductal carcinoma EFO EFO_0000186 GSM985236 1 K142 Breast tumor tissue 167a 74 1 1 Sporadic Sporadic Sporadic 0 Sporadic Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 P-GSE49481-2 ArrayExpress GSM985236 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985236 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985236 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985236_167a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985236_sample_table.txt norm GSM985236_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 74 not specified not specified 1 1 not specified Sporadic Sporadic not specified Sporadic 0 not specified not specified Sporadic not specified not specified not specified LumB 1 1 not specified not specified GSM985236 2 K142 Universal Human Reference RNA (Stratagene) 167a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985236 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985236 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985236 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985236_167a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985236_sample_table.txt norm GSM985236_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985235 2 K189 Universal Human Reference RNA (Stratagene) 165a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985235 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985235 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985235 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985235_165a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985235_sample_table.txt norm GSM985235_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985235 1 K189 Breast tumor tissue 165a 84 1 1 Sporadic Sporadic 1 Sporadic 0 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 0 0 13 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985235 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985235 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985235 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985235_165a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985235_sample_table.txt norm GSM985235_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 84 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 0 0 13 invasive ductal carcinoma EFO EFO_0000186 GSM985234 1 K087 Breast tumor tissue 164a 54 1 1 Sporadic Sporadic 1 Sporadic 0 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 13 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985234 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985234 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985234 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985234_164a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985234_sample_table.txt norm GSM985234_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 54 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 0 not specified not specified Premenopausal not specified not specified LumA 1 1 13 invasive ductal carcinoma EFO EFO_0000186 GSM985234 2 K087 Universal Human Reference RNA (Stratagene) 164a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985234 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985234 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985234 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985234_164a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985234_sample_table.txt norm GSM985234_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985233 1 K029 Breast tumor tissue 163a 49 0 0 BRCA1 Sporadic 3 Sporadic 1 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 0 22 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985233 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985233 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985233 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985233_163a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985233_sample_table.txt norm GSM985233_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 49 not specified not specified 0 0 not specified BRCA1 Sporadic 3 Sporadic 1 not specified not specified not specified Premenopausal not specified not specified Her2 0 0 22 invasive ductal carcinoma EFO EFO_0000186 GSM985233 2 K029 Universal Human Reference RNA (Stratagene) 163a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985233 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985233 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985233 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985233_163a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985233_sample_table.txt norm GSM985233_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985232 1 K102 Breast tumor tissue 162a 74 1 Sporadic BRCA2 Sporadic 1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 P-GSE49481-2 ArrayExpress GSM985232 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985232 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985232 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985232_162a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985232_sample_table.txt norm GSM985232_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 74 not specified not specified 1 not specified not specified Sporadic BRCA2 not specified Sporadic 1 not specified not specified not specified not specified not specified not specified Her2 0 not specified not specified not specified GSM985232 2 K102 Universal Human Reference RNA (Stratagene) 162a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985232 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985232 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985232 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985232_162a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985232_sample_table.txt norm GSM985232_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985231 2 K077 Universal Human Reference RNA (Stratagene) 160a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985231 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985231 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985231 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985231_160a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985231_sample_table.txt norm GSM985231_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985231 1 K077 Breast tumor tissue 160a 70 1 1 Sporadic Sporadic 2 Sporadic 0 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 14 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985231 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985231 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985231 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985231_160a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985231_sample_table.txt norm GSM985231_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 70 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 14 invasive ductal carcinoma EFO EFO_0000186 GSM985230 2 A143 Universal Human Reference RNA (Stratagene) 159a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985230 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985230 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985230 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985230_159a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985230_sample_table.txt norm GSM985230_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985230 1 A143 Breast tumor tissue 159a 46 0 0 Sporadic 2 BRCA1 0 Premenopausal BRCA1 c.181T>G, Exon5, p.(Cys61Gly) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 normal EFO http://purl.obolibrary.org/obo/PATO_0000461 1 1 30 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985230 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985230 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985230 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985230_159a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985230_sample_table.txt norm GSM985230_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 46 not specified not specified 0 0 not specified Sporadic not specified 2 BRCA1 0 not specified not specified not specified Premenopausal not specified BRCA1 c.181T>G, Exon5, p.(Cys61Gly) normal EFO http://purl.obolibrary.org/obo/PATO_0000461 1 1 30 invasive ductal carcinoma EFO EFO_0000186 GSM985229 2 K046 Universal Human Reference RNA (Stratagene) 158a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985229 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985229 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985229 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985229_158a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985229_sample_table.txt norm GSM985229_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985229 1 K046 Breast tumor tissue 158a 43 1 1 Sporadic BRCA2 3 Sporadic 0 Sporadic Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 30 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985229 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985229 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985229 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985229_158a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985229_sample_table.txt norm GSM985229_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 43 not specified not specified 1 1 not specified Sporadic BRCA2 3 Sporadic 0 not specified not specified Sporadic Premenopausal not specified not specified LumB 1 1 30 invasive ductal carcinoma EFO EFO_0000186 GSM985228 2 K011 Universal Human Reference RNA (Stratagene) 156a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985228 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985228 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985228 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985228_156a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985228_sample_table.txt norm GSM985228_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985228 1 K011 Breast tumor tissue 156a 44 1 1 Sporadic Sporadic 3 Sporadic 0 BRCA2 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 1 26 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985228 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985228 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985228 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985228_156a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985228_sample_table.txt norm GSM985228_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 44 not specified not specified 1 1 not specified Sporadic Sporadic 3 Sporadic 0 not specified not specified BRCA2 Premenopausal not specified not specified LumB 0 1 26 invasive ductal carcinoma EFO EFO_0000186 GSM985227 2 K118 Universal Human Reference RNA (Stratagene) 155a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985227 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985227 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985227 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985227_155a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985227_sample_table.txt norm GSM985227_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985227 1 K118 Breast tumor tissue 155a 66 1 1 Sporadic Sporadic 1 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 11 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985227 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985227 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985227 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985227_155a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985227_sample_table.txt norm GSM985227_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 66 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 11 invasive ductal carcinoma EFO EFO_0000186 GSM985226 2 A120 Universal Human Reference RNA (Stratagene) 153a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985226 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985226 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985226 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985226_153a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985226_sample_table.txt norm GSM985226_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985226 1 A120 Breast tumor tissue 153a 46 1 Sporadic BRCA1 0 postmenopausal EFO EFO_0002721 BRCA1 c.2475delC, Exon11, p.(Asp825Glufs*21) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 30 P-GSE49481-2 ArrayExpress GSM985226 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985226 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985226 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985226_153a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985226_sample_table.txt norm GSM985226_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 46 not specified not specified 1 not specified not specified Sporadic not specified not specified BRCA1 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified BRCA1 c.2475delC, Exon11, p.(Asp825Glufs*21) LumB 0 not specified 30 not specified GSM985225 1 K151 Breast tumor tissue 150a 72 1 1 Sporadic Sporadic 2 Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 25 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985225 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985225 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985225 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985225_150a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985225_sample_table.txt norm GSM985225_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 72 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 1 1 25 invasive ductal carcinoma EFO EFO_0000186 GSM985225 2 K151 Universal Human Reference RNA (Stratagene) 150a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985225 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985225 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985225 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985225_150a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985225_sample_table.txt norm GSM985225_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985224 1 K161 Breast tumor tissue 149a 70 1 1 Sporadic Sporadic 2 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 36 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985224 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985224 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985224 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985224_149a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985224_sample_table.txt norm GSM985224_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 70 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 36 invasive ductal carcinoma EFO EFO_0000186 GSM985224 2 K161 Universal Human Reference RNA (Stratagene) 149a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985224 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985224 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985224 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985224_149a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985224_sample_table.txt norm GSM985224_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985223 2 A007 Universal Human Reference RNA (Stratagene) 143a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985223 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985223 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985223 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985223_143a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985223_sample_table.txt norm GSM985223_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985223 1 A007 Breast tumor tissue 143a 57 1 1 Sporadic 2 BRCA1 0 postmenopausal EFO EFO_0002721 BRCA1 c.5503C>T, Exon24, p.(Arg1835*) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 23 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985223 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985223 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985223 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985223_143a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985223_sample_table.txt norm GSM985223_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 57 not specified not specified 1 1 not specified Sporadic not specified 2 BRCA1 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified BRCA1 c.5503C>T, Exon24, p.(Arg1835*) LumB 0 0 23 invasive ductal carcinoma EFO EFO_0000186 GSM985222 1 A121 Breast tumor tissue 140a 32 0 0 BRCA2 2 BRCA2 0 Premenopausal BRCA2 c.5754delT, Exon11, p.(His1918Glnfs*45) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 25 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985222 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985222 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985222 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985222_140a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985222_sample_table.txt norm GSM985222_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 32 not specified not specified 0 0 not specified not specified BRCA2 2 BRCA2 0 not specified not specified not specified Premenopausal not specified BRCA2 c.5754delT, Exon11, p.(His1918Glnfs*45) basal EFO EFO_0001654 0 0 25 invasive ductal carcinoma EFO EFO_0000186 GSM985222 2 A121 Universal Human Reference RNA (Stratagene) 140a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985222 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985222 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985222 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985222_140a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985222_sample_table.txt norm GSM985222_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985221 2 K092 Universal Human Reference RNA (Stratagene) 139a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985221 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985221 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985221 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985221_139a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985221_sample_table.txt norm GSM985221_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985221 1 K092 Breast tumor tissue 139a 51 1 1 Sporadic Sporadic 2 Sporadic 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 14 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985221 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985221 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985221 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985221_139a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985221_sample_table.txt norm GSM985221_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 51 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified not specified Premenopausal not specified not specified LumA 1 1 14 invasive ductal carcinoma EFO EFO_0000186 GSM985220 1 A131 Breast tumor tissue 137a 61 BRCA1 0 0 BRCA1 BRCA1 0 0 postmenopausal EFO EFO_0002721 BRCA1 c.3400G>T, Exon11, p.(Glu1134*) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 25 Medullary carcinoma P-GSE49481-2 ArrayExpress GSM985220 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985220 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985220 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985220_137a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985220_sample_table.txt norm GSM985220_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 61 not specified BRCA1 0 0 not specified BRCA1 not specified not specified BRCA1 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified BRCA1 c.3400G>T, Exon11, p.(Glu1134*) basal EFO EFO_0001654 0 0 25 Medullary carcinoma GSM985220 2 A131 Universal Human Reference RNA (Stratagene) 137a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985220 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985220 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985220 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985220_137a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985220_sample_table.txt norm GSM985220_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985219 2 K186 Universal Human Reference RNA (Stratagene) 136a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985219 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985219 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985219 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985219_136a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985219_sample_table.txt norm GSM985219_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985219 1 K186 Breast tumor tissue 136a 59 1 1 Sporadic Sporadic 1 Sporadic 0 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 10 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985219 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985219 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985219 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985219_136a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985219_sample_table.txt norm GSM985219_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 59 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 10 invasive ductal carcinoma EFO EFO_0000186 GSM985218 1 K158 Breast tumor tissue 131a 46 1 Sporadic Sporadic 1 Sporadic 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 14 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985218 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985218 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985218 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985218_131a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985218_sample_table.txt norm GSM985218_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 46 not specified not specified 1 not specified not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified not specified Premenopausal not specified not specified LumA 1 not specified 14 invasive ductal carcinoma EFO EFO_0000186 GSM985218 2 K158 Universal Human Reference RNA (Stratagene) 131a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985218 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985218 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985218 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985218_131a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985218_sample_table.txt norm GSM985218_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985217 1 K173 Breast tumor tissue 129a 56 1 1 Sporadic Sporadic 1 Sporadic 1 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 31 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985217 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985217 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985217 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985217_129a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985217_sample_table.txt norm GSM985217_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 56 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 1 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 31 invasive ductal carcinoma EFO EFO_0000186 GSM985217 2 K173 Universal Human Reference RNA (Stratagene) 129a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985217 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985217 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985217 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985217_129a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985217_sample_table.txt norm GSM985217_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985216 1 K168 Breast tumor tissue 128a 54 1 1 Sporadic Sporadic 2 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 12 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985216 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985216 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985216 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985216_128a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985216_sample_table.txt norm GSM985216_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 54 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 12 invasive ductal carcinoma EFO EFO_0000186 GSM985216 2 K168 Universal Human Reference RNA (Stratagene) 128a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985216 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985216 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985216 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985216_128a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985216_sample_table.txt norm GSM985216_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985215 2 K065 Universal Human Reference RNA (Stratagene) 125a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985215 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985215 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985215 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985215_125a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985215_sample_table.txt norm GSM985215_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985215 1 K065 Breast tumor tissue 125a 61 0 1 Sporadic BRCA2 3 Sporadic 1 Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 0 9 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985215 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985215 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985215 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985215_125a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985215_sample_table.txt norm GSM985215_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 61 not specified not specified 0 1 not specified Sporadic BRCA2 3 Sporadic 1 not specified not specified not specified Perimenopausal not specified not specified Her2 0 0 9 invasive ductal carcinoma EFO EFO_0000186 GSM985214 2 K058 Universal Human Reference RNA (Stratagene) 124a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985214 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985214 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985214 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985214_124a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985214_sample_table.txt norm GSM985214_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985214 1 K058 Breast tumor tissue 124a 36 1 1 Sporadic Sporadic 3 Sporadic 0 Sporadic Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 19 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985214 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985214 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985214 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985214_124a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.6.zip P-GSE49481-1 ArrayExpress GSM985214_sample_table.txt norm GSM985214_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 36 not specified not specified 1 1 not specified Sporadic Sporadic 3 Sporadic 0 not specified not specified Sporadic Premenopausal not specified not specified LumB 1 1 19 invasive ductal carcinoma EFO EFO_0000186 GSM985213 2 A156 Universal Human Reference RNA (Stratagene) 122a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985213 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985213 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985213 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985213_122a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985213_sample_table.txt norm GSM985213_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985213 1 A156 Breast tumor tissue 122a 45 BRCA1 1 0 Sporadic 3 BRCA1 0 Premenopausal BRCA1 c.3319G>T, Exon11, p.(Glu1107*) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 26 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985213 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985213 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985213 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985213_122a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985213_sample_table.txt norm GSM985213_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 45 not specified BRCA1 1 0 not specified Sporadic not specified 3 BRCA1 0 not specified not specified not specified Premenopausal not specified BRCA1 c.3319G>T, Exon11, p.(Glu1107*) basal EFO EFO_0001654 0 0 26 invasive ductal carcinoma EFO EFO_0000186 GSM985212 1 K068 Breast tumor tissue 119a 66 1 1 BRCA1 Sporadic 2 Sporadic 1 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 0 0 61 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985212 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985212 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985212 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985212_119a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985212_sample_table.txt norm GSM985212_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 66 not specified not specified 1 1 not specified BRCA1 Sporadic 2 Sporadic 1 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 0 0 61 invasive ductal carcinoma EFO EFO_0000186 GSM985212 2 K068 Universal Human Reference RNA (Stratagene) 119a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985212 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985212 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985212 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985212_119a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985212_sample_table.txt norm GSM985212_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985211 1 A140 Breast tumor tissue 118a 32 BRCA1 0 0 BRCA1 BRCA1 0 Premenopausal BRCA1 c.1505delT, Exon11, p.(Leu502*) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 52 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985211 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985211 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985211 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985211_118a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985211_sample_table.txt norm GSM985211_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 32 not specified BRCA1 0 0 not specified BRCA1 not specified not specified BRCA1 0 not specified not specified not specified Premenopausal not specified BRCA1 c.1505delT, Exon11, p.(Leu502*) basal EFO EFO_0001654 0 0 52 invasive lobular carcinoma EFO EFO_0000553 GSM985211 2 A140 Universal Human Reference RNA (Stratagene) 118a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985211 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985211 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985211 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985211_118a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985211_sample_table.txt norm GSM985211_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985210 2 K089 Universal Human Reference RNA (Stratagene) 117a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985210 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985210 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985210 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985210_117a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985210_sample_table.txt norm GSM985210_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985210 1 K089 Breast tumor tissue 117a 53 1 1 Sporadic BRCA2 2 Sporadic 0 0 Sporadic Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 9 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985210 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985210 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985210 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985210_117a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985210_sample_table.txt norm GSM985210_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 53 not specified not specified 1 1 not specified Sporadic BRCA2 2 Sporadic 0 0 not specified Sporadic Premenopausal not specified not specified LumB 1 1 9 invasive ductal carcinoma EFO EFO_0000186 GSM985209 1 K072 Breast tumor tissue 116a 56 1 1 Sporadic Sporadic 2 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 26 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985209 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985209 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985209 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985209_116a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985209_sample_table.txt norm GSM985209_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 56 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 26 invasive lobular carcinoma EFO EFO_0000553 GSM985209 2 K072 Universal Human Reference RNA (Stratagene) 116a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985209 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985209 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985209 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985209_116a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985209_sample_table.txt norm GSM985209_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985208 2 A013 Universal Human Reference RNA (Stratagene) 114a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985208 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985208 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985208 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985208_114a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985208_sample_table.txt norm GSM985208_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985208 1 A013 Breast tumor tissue 114a 28 1 1 Sporadic 3 BRCA2 0 0 Sporadic Premenopausal BRCA2 c.2830A>T, Exon11, p.(Lys944*) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 27 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985208 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985208 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985208 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985208_114a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985208_sample_table.txt norm GSM985208_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 28 not specified not specified 1 1 not specified not specified Sporadic 3 BRCA2 0 0 not specified Sporadic Premenopausal not specified BRCA2 c.2830A>T, Exon11, p.(Lys944*) LumB 1 1 27 invasive ductal carcinoma EFO EFO_0000186 GSM985207 2 K045 Universal Human Reference RNA (Stratagene) 111a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985207 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985207 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985207 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985207_111a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985207_sample_table.txt norm GSM985207_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985207 1 K045 Breast tumor tissue 111a 89 1 1 Sporadic Sporadic 2 Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 25 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985207 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985207 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985207 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985207_111a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985207_sample_table.txt norm GSM985207_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 89 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 0 0 25 invasive ductal carcinoma EFO EFO_0000186 GSM985206 1 A111 Breast tumor tissue 109a 42 1 0 Sporadic 1 BRCA2 0 Sporadic Premenopausal BRCA2 c.1310_1313delAAGA, Exon10, p.(Lys437Ilefs*22) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985206 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985206 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985206 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985206_109a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985206_sample_table.txt norm GSM985206_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 42 not specified not specified 1 0 not specified not specified Sporadic 1 BRCA2 0 not specified not specified Sporadic Premenopausal not specified BRCA2 c.1310_1313delAAGA, Exon10, p.(Lys437Ilefs*22) LumB 1 1 15 invasive ductal carcinoma EFO EFO_0000186 GSM985206 2 A111 Universal Human Reference RNA (Stratagene) 109a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985206 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985206 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985206 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985206_109a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985206_sample_table.txt norm GSM985206_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985205 1 K025 Breast tumor tissue 106a 86 1 1 Sporadic Sporadic Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 20 P-GSE49481-2 ArrayExpress GSM985205 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985205 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985205 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985205_106a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985205_sample_table.txt norm GSM985205_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 86 not specified not specified 1 1 not specified Sporadic Sporadic not specified Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 20 not specified GSM985205 2 K025 Universal Human Reference RNA (Stratagene) 106a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985205 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985205 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985205 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985205_106a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985205_sample_table.txt norm GSM985205_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985204 2 K156 Universal Human Reference RNA (Stratagene) 102a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985204 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985204 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985204 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985204_102a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985204_sample_table.txt norm GSM985204_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985204 1 K156 Breast tumor tissue 102a 52 1 1 Sporadic Sporadic 1 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 26 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985204 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985204 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985204 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985204_102a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985204_sample_table.txt norm GSM985204_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 52 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 26 invasive ductal carcinoma EFO EFO_0000186 GSM985203 2 K075 Universal Human Reference RNA (Stratagene) 099a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985203 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985203 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985203 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985203_099a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985203_sample_table.txt norm GSM985203_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985203 1 K075 Breast tumor tissue 099a 55 1 1 Sporadic Sporadic 1 Sporadic 0 0 Other Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 16 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985203 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985203 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985203 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985203_099a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985203_sample_table.txt norm GSM985203_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 55 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 0 not specified not specified Other not specified not specified LumA 1 1 16 invasive ductal carcinoma EFO EFO_0000186 GSM985202 1 K114 Breast tumor tissue 096a 50 1 1 Sporadic Sporadic 2 Sporadic 0 Sporadic Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 20 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985202 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985202 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985202 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985202_096a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985202_sample_table.txt norm GSM985202_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 50 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified Sporadic Premenopausal not specified not specified LumB 0 0 20 invasive ductal carcinoma EFO EFO_0000186 GSM985202 2 K114 Universal Human Reference RNA (Stratagene) 096a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985202 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985202 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985202 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985202_096a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985202_sample_table.txt norm GSM985202_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985201 2 K067 Universal Human Reference RNA (Stratagene) 095a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985201 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985201 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985201 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985201_095a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985201_sample_table.txt norm GSM985201_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985201 1 K067 Breast tumor tissue 095a 85 1 1 Sporadic Sporadic 1 Sporadic 0 Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 18 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985201 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985201 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985201 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985201_095a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985201_sample_table.txt norm GSM985201_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 85 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified not specified Perimenopausal not specified not specified LumA 1 1 18 invasive ductal carcinoma EFO EFO_0000186 GSM985200 1 A102 Breast tumor tissue 093a 42 1 1 BRCA2 2 BRCA2 0 BRCA2 Premenopausal BRCA2 c.7617+1G>A, Splice mut, Exon15 skipping Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 18 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985200 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985200 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985200 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985200_093a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985200_sample_table.txt norm GSM985200_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 42 not specified not specified 1 1 not specified not specified BRCA2 2 BRCA2 0 not specified not specified BRCA2 Premenopausal not specified BRCA2 c.7617+1G>A, Splice mut, Exon15 skipping LumB 1 1 18 invasive ductal carcinoma EFO EFO_0000186 GSM985200 2 A102 Universal Human Reference RNA (Stratagene) 093a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985200 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985200 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985200 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985200_093a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985200_sample_table.txt norm GSM985200_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985199 1 K060 Breast tumor tissue 092a 95 1 1 Sporadic Sporadic 2 Sporadic 0 Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 0 0 24 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985199 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985199 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985199 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985199_092a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985199_sample_table.txt norm GSM985199_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 95 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified not specified Perimenopausal not specified not specified LumA 0 0 24 invasive ductal carcinoma EFO EFO_0000186 GSM985199 2 K060 Universal Human Reference RNA (Stratagene) 092a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985199 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985199 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985199 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985199_092a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985199_sample_table.txt norm GSM985199_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985198 2 A089 Universal Human Reference RNA (Stratagene) 090a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985198 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985198 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985198 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985198_090a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985198_sample_table.txt norm GSM985198_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985198 1 A089 Breast tumor tissue 090a 32 BRCA1 0 0 BRCA1 3 BRCA1 0 Premenopausal BRCA1 c.181T>G, Exon5, p.(Cys61Gly) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 25 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985198 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985198 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985198 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985198_090a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985198_sample_table.txt norm GSM985198_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 32 not specified BRCA1 0 0 not specified BRCA1 not specified 3 BRCA1 0 not specified not specified not specified Premenopausal not specified BRCA1 c.181T>G, Exon5, p.(Cys61Gly) basal EFO EFO_0001654 0 0 25 invasive ductal carcinoma EFO EFO_0000186 GSM985197 1 K074 Breast tumor tissue 087a 48 1 1 Sporadic Sporadic 2 Sporadic 0 0 Sporadic Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 25 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985197 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985197 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985197 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985197_087a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985197_sample_table.txt norm GSM985197_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 48 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 0 not specified Sporadic Premenopausal not specified not specified LumB 1 1 25 invasive lobular carcinoma EFO EFO_0000553 GSM985197 2 K074 Universal Human Reference RNA (Stratagene) 087a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985197 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985197 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985197 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985197_087a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985197_sample_table.txt norm GSM985197_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985196 1 K133 Breast tumor tissue 085a 76 1 1 Sporadic Sporadic Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 1 28 Other P-GSE49481-2 ArrayExpress GSM985196 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985196 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985196 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985196_085a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985196_sample_table.txt norm GSM985196_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 76 not specified not specified 1 1 not specified Sporadic Sporadic not specified Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 0 1 28 Other GSM985196 2 K133 Universal Human Reference RNA (Stratagene) 085a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985196 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985196 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985196 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985196_085a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985196_sample_table.txt norm GSM985196_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985195 2 K147 Universal Human Reference RNA (Stratagene) 084a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985195 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985195 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985195 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985195_084a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985195_sample_table.txt norm GSM985195_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985195 1 K147 Breast tumor tissue 084a 65 1 1 Sporadic Sporadic 2 Sporadic 1 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 50 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985195 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985195 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985195 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985195_084a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985195_sample_table.txt norm GSM985195_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 65 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 1 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 0 0 50 invasive ductal carcinoma EFO EFO_0000186 GSM985194 2 K066 Universal Human Reference RNA (Stratagene) 083a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985194 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985194 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985194 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985194_083a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985194_sample_table.txt norm GSM985194_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985194 1 K066 Breast tumor tissue 083a 87 1 1 Sporadic Sporadic Sporadic 0 Sporadic Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 47 mucinous carcinoma EFO EFO_0000197 P-GSE49481-2 ArrayExpress GSM985194 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985194 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985194 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985194_083a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985194_sample_table.txt norm GSM985194_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 87 not specified not specified 1 1 not specified Sporadic Sporadic not specified Sporadic 0 not specified not specified Sporadic Perimenopausal not specified not specified LumB 1 1 47 mucinous carcinoma EFO EFO_0000197 GSM985193 2 K113 Universal Human Reference RNA (Stratagene) 080a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985193 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985193 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985193 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985193_080a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985193_sample_table.txt norm GSM985193_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985193 1 K113 Breast tumor tissue 080a 50 1 1 Sporadic Sporadic 1 Sporadic 0 Sporadic Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 0 32 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985193 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985193 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985193 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985193_080a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985193_sample_table.txt norm GSM985193_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 50 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified Sporadic Premenopausal not specified not specified LumB 1 0 32 invasive ductal carcinoma EFO EFO_0000186 GSM985192 1 A130 Breast tumor tissue 079a 39 1 1 BRCA2 3 BRCA2 0 0 Premenopausal BRCA2 c.145G>T, Exon3, p.(Glu49*) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 normal EFO http://purl.obolibrary.org/obo/PATO_0000461 1 1 15 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985192 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985192 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985192 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985192_079a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985192_sample_table.txt norm GSM985192_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 39 not specified not specified 1 1 not specified not specified BRCA2 3 BRCA2 0 0 not specified not specified Premenopausal not specified BRCA2 c.145G>T, Exon3, p.(Glu49*) normal EFO http://purl.obolibrary.org/obo/PATO_0000461 1 1 15 invasive lobular carcinoma EFO EFO_0000553 GSM985192 2 A130 Universal Human Reference RNA (Stratagene) 079a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985192 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985192 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985192 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985192_079a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985192_sample_table.txt norm GSM985192_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985191 2 K056 Universal Human Reference RNA (Stratagene) 077a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985191 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985191 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985191 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985191_077a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985191_sample_table.txt norm GSM985191_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985191 1 K056 Breast tumor tissue 077a 50 1 1 Sporadic Sporadic 1 Sporadic 0 Sporadic Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 13 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985191 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985191 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985191 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985191_077a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985191_sample_table.txt norm GSM985191_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 50 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified Sporadic Premenopausal not specified not specified LumB 1 1 13 invasive ductal carcinoma EFO EFO_0000186 GSM985190 1 A126 Breast tumor tissue 075a 56 BRCA1 0 0 BRCA1 2 BRCA1 0 0 postmenopausal EFO EFO_0002721 BRCA1 c.5213G>A, Exon20, p.(Gly1738Glu) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 20 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985190 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985190 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985190 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985190_075a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985190_sample_table.txt norm GSM985190_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 56 not specified BRCA1 0 0 not specified BRCA1 not specified 2 BRCA1 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified BRCA1 c.5213G>A, Exon20, p.(Gly1738Glu) basal EFO EFO_0001654 0 0 20 invasive ductal carcinoma EFO EFO_0000186 GSM985190 2 A126 Universal Human Reference RNA (Stratagene) 075a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985190 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985190 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985190 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985190_075a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985190_sample_table.txt norm GSM985190_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985189 2 A125 Universal Human Reference RNA (Stratagene) 074a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985189 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985189 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985189 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985189_074a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985189_sample_table.txt norm GSM985189_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985189 1 A125 Breast tumor tissue 074a 62 1 1 Sporadic 3 BRCA1 0 0 postmenopausal EFO EFO_0002721 BRCA1 c.2475delC, Exon11, p.(Asp825Glufs*21) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 22 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985189 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985189 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985189 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985189_074a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985189_sample_table.txt norm GSM985189_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 62 not specified not specified 1 1 not specified Sporadic not specified 3 BRCA1 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified BRCA1 c.2475delC, Exon11, p.(Asp825Glufs*21) LumB 0 not specified 22 invasive ductal carcinoma EFO EFO_0000186 GSM985188 2 K040 Universal Human Reference RNA (Stratagene) 072a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985188 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985188 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985188 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985188_072a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985188_sample_table.txt norm GSM985188_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985188 1 K040 Breast tumor tissue 072a 65 1 1 Sporadic Sporadic 1 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 40 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985188 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985188 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985188 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985188_072a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985188_sample_table.txt norm GSM985188_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 65 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 40 invasive ductal carcinoma EFO EFO_0000186 GSM985187 1 K032 Breast tumor tissue 071a 59 1 1 Sporadic Sporadic 1 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 0 1 8 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985187 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985187 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985187 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985187_071a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985187_sample_table.txt norm GSM985187_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 59 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 0 1 8 invasive ductal carcinoma EFO EFO_0000186 GSM985187 2 K032 Universal Human Reference RNA (Stratagene) 071a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985187 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985187 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985187 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985187_071a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985187_sample_table.txt norm GSM985187_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985186 1 A117 Breast tumor tissue 070a 45 1 1 BRCA2 2 BRCA2 0 0 BRCA2 Premenopausal BRCA2 c.6601delT, Exon11, p.(Ser2201Leufs*5) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 28 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985186 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985186 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985186 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985186_070a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985186_sample_table.txt norm GSM985186_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 45 not specified not specified 1 1 not specified not specified BRCA2 2 BRCA2 0 0 not specified BRCA2 Premenopausal not specified BRCA2 c.6601delT, Exon11, p.(Ser2201Leufs*5) LumB 1 1 28 invasive ductal carcinoma EFO EFO_0000186 GSM985186 2 A117 Universal Human Reference RNA (Stratagene) 070a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985186 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985186 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985186 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985186_070a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985186_sample_table.txt norm GSM985186_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985185 2 K169 Universal Human Reference RNA (Stratagene) 069a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985185 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985185 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985185 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985185_069a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985185_sample_table.txt norm GSM985185_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985185 1 K169 Breast tumor tissue 069a 61 1 1 Sporadic Sporadic Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 20 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985185 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985185 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985185 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985185_069a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985185_sample_table.txt norm GSM985185_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 61 not specified not specified 1 1 not specified Sporadic Sporadic not specified Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 20 invasive lobular carcinoma EFO EFO_0000553 GSM985184 2 K019 Universal Human Reference RNA (Stratagene) 068a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985184 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985184 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985184 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985184_068a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985184_sample_table.txt norm GSM985184_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985184 1 K019 Breast tumor tissue 068a 78 1 1 Sporadic Sporadic 2 Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 46 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985184 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985184 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985184 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985184_068a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.7.zip P-GSE49481-1 ArrayExpress GSM985184_sample_table.txt norm GSM985184_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 78 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 0 0 46 invasive ductal carcinoma EFO EFO_0000186 GSM985183 1 K001 Breast tumor tissue 067a 76 Sporadic 0 0 BRCA1 Sporadic 3 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 25 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985183 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985183 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985183 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985183_067a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985183_sample_table.txt norm GSM985183_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 76 not specified Sporadic 0 0 not specified BRCA1 Sporadic 3 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified basal EFO EFO_0001654 0 0 25 invasive ductal carcinoma EFO EFO_0000186 GSM985183 2 K001 Universal Human Reference RNA (Stratagene) 067a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985183 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985183 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985183 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985183_067a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985183_sample_table.txt norm GSM985183_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985182 1 K120 Breast tumor tissue 065a 72 1 1 Sporadic Sporadic 2 Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 35 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985182 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985182 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985182 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985182_065a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985182_sample_table.txt norm GSM985182_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 72 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 1 1 35 invasive ductal carcinoma EFO EFO_0000186 GSM985182 2 K120 Universal Human Reference RNA (Stratagene) 065a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985182 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985182 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985182 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985182_065a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985182_sample_table.txt norm GSM985182_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985181 2 A011 Universal Human Reference RNA (Stratagene) 063a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985181 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985181 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985181 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985181_063a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985181_sample_table.txt norm GSM985181_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985181 1 A011 Breast tumor tissue 063a 46 1 1 Sporadic 1 BRCA2 0 Premenopausal BRCA2 c.6486_6489delACAA, Exon11, p.(Lys2162Asnfs*5) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 14 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985181 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985181 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985181 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985181_063a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985181_sample_table.txt norm GSM985181_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 46 not specified not specified 1 1 not specified not specified Sporadic 1 BRCA2 0 not specified not specified not specified Premenopausal not specified BRCA2 c.6486_6489delACAA, Exon11, p.(Lys2162Asnfs*5) LumA 1 1 14 invasive ductal carcinoma EFO EFO_0000186 GSM985180 2 K064 Universal Human Reference RNA (Stratagene) 062a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985180 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985180 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985180 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985180_062a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985180_sample_table.txt norm GSM985180_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985180 1 K064 Breast tumor tissue 062a 51 1 1 Sporadic BRCA2 2 Sporadic 0 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 31 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985180 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985180 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985180 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985180_062a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985180_sample_table.txt norm GSM985180_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 51 not specified not specified 1 1 not specified Sporadic BRCA2 2 Sporadic 0 0 not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 1 1 31 invasive ductal carcinoma EFO EFO_0000186 GSM985179 1 K053 Breast tumor tissue 061a 75 Sporadic 0 0 BRCA1 Sporadic 3 Sporadic 0 Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 22 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985179 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985179 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985179 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985179_061a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985179_sample_table.txt norm GSM985179_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 75 not specified Sporadic 0 0 not specified BRCA1 Sporadic 3 Sporadic 0 not specified not specified not specified Perimenopausal not specified not specified basal EFO EFO_0001654 0 0 22 invasive ductal carcinoma EFO EFO_0000186 GSM985179 2 K053 Universal Human Reference RNA (Stratagene) 061a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985179 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985179 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985179 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985179_061a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985179_sample_table.txt norm GSM985179_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985178 1 K051 Breast tumor tissue 060a 65 1 1 Sporadic Sporadic 1 Sporadic 1 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985178 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985178 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985178 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985178_060a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985178_sample_table.txt norm GSM985178_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 65 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 1 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 15 invasive ductal carcinoma EFO EFO_0000186 GSM985178 2 K051 Universal Human Reference RNA (Stratagene) 060a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985178 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985178 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985178 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985178_060a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985178_sample_table.txt norm GSM985178_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985177 2 A174 Universal Human Reference RNA (Stratagene) 059a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985177 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985177 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985177 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985177_059a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985177_sample_table.txt norm GSM985177_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985177 1 A174 Breast tumor tissue 059a 74 1 1 BRCA1 3 BRCA1 0 0 postmenopausal EFO EFO_0002721 BRCA1 c.4987-?_5193+?del, Exon17-19, p.(Met1663_Glu1731del) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 11 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985177 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985177 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985177 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985177_059a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985177_sample_table.txt norm GSM985177_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 74 not specified not specified 1 1 not specified BRCA1 not specified 3 BRCA1 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified BRCA1 c.4987-?_5193+?del, Exon17-19, p.(Met1663_Glu1731del) LumB 0 0 11 invasive ductal carcinoma EFO EFO_0000186 GSM985176 1 K008 Breast tumor tissue 058a 86 1 Sporadic Sporadic Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 0 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985176 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985176 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985176 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985176_058a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985176_sample_table.txt norm GSM985176_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 86 not specified not specified 1 not specified not specified Sporadic Sporadic not specified Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 0 not specified not specified invasive ductal carcinoma EFO EFO_0000186 GSM985176 2 K008 Universal Human Reference RNA (Stratagene) 058a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985176 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985176 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985176 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985176_058a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985176_sample_table.txt norm GSM985176_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985175 1 K115 Breast tumor tissue 057a 47 0 0 Sporadic Sporadic 3 Sporadic 1 1 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 0 19 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985175 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985175 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985175 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985175_057a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985175_sample_table.txt norm GSM985175_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 47 not specified not specified 0 0 not specified Sporadic Sporadic 3 Sporadic 1 1 not specified not specified Premenopausal not specified not specified Her2 0 0 19 invasive ductal carcinoma EFO EFO_0000186 GSM985175 2 K115 Universal Human Reference RNA (Stratagene) 057a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985175 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985175 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985175 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985175_057a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985175_sample_table.txt norm GSM985175_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985174 2 K057 Universal Human Reference RNA (Stratagene) 055a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985174 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985174 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985174 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985174_055a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985174_sample_table.txt norm GSM985174_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985174 1 K057 Breast tumor tissue 055a 51 1 1 Sporadic Sporadic 2 Sporadic 0 Sporadic Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 0 50 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985174 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985174 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985174 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985174_055a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985174_sample_table.txt norm GSM985174_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 51 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified Sporadic Perimenopausal not specified not specified LumB 1 0 50 invasive ductal carcinoma EFO EFO_0000186 GSM985173 1 K048 Breast tumor tissue 053a 58 1 1 Sporadic BRCA2 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 15 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985173 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985173 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985173 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985173_053a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985173_sample_table.txt norm GSM985173_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 58 not specified not specified 1 1 not specified Sporadic BRCA2 not specified Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 15 invasive lobular carcinoma EFO EFO_0000553 GSM985173 2 K048 Universal Human Reference RNA (Stratagene) 053a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985173 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985173 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985173 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985173_053a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985173_sample_table.txt norm GSM985173_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985172 1 A019 Breast tumor tissue 052a 38 1 1 BRCA2 3 BRCA2 1 1 BRCA2 Premenopausal BRCA2 c.6373delA, Exon11, p.(Thr2125Profs*12) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 14 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985172 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985172 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985172 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985172_052a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985172_sample_table.txt norm GSM985172_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 38 not specified not specified 1 1 not specified not specified BRCA2 3 BRCA2 1 1 not specified BRCA2 Premenopausal not specified BRCA2 c.6373delA, Exon11, p.(Thr2125Profs*12) LumB 1 1 14 invasive ductal carcinoma EFO EFO_0000186 GSM985172 2 A019 Universal Human Reference RNA (Stratagene) 052a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985172 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985172 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985172 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985172_052a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985172_sample_table.txt norm GSM985172_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985171 1 K164 Breast tumor tissue 050a 64 0 0 Sporadic Sporadic 3 Sporadic 1 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 0 32 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985171 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985171 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985171 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985171_050a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985171_sample_table.txt norm GSM985171_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 64 not specified not specified 0 0 not specified Sporadic Sporadic 3 Sporadic 1 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified Her2 0 0 32 invasive ductal carcinoma EFO EFO_0000186 GSM985171 2 K164 Universal Human Reference RNA (Stratagene) 050a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985171 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985171 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985171 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985171_050a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985171_sample_table.txt norm GSM985171_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985170 2 A087 Universal Human Reference RNA (Stratagene) 048a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985170 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985170 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985170 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985170_048a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985170_sample_table.txt norm GSM985170_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985170 1 A087 Breast tumor tissue 048a 41 BRCA1 0 0 BRCA1 3 BRCA1 0 Premenopausal BRCA1 c.5089T>C, Exon18, p.(Cys1697Arg) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985170 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985170 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985170 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985170_048a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985170_sample_table.txt norm GSM985170_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 41 not specified BRCA1 0 0 not specified BRCA1 not specified 3 BRCA1 0 not specified not specified not specified Premenopausal not specified BRCA1 c.5089T>C, Exon18, p.(Cys1697Arg) basal EFO EFO_0001654 0 0 15 invasive ductal carcinoma EFO EFO_0000186 GSM985169 2 A115 Universal Human Reference RNA (Stratagene) 047a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985169 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985169 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985169 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985169_047a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985169_sample_table.txt norm GSM985169_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985169 1 A115 Breast tumor tissue 047a 72 1 1 BRCA2 3 BRCA2 0 BRCA2 postmenopausal EFO EFO_0002721 BRCA2 c.2808_2811delACAA, Exon11, p.(Ala938Profs*21) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 1 28 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985169 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985169 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985169 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985169_047a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985169_sample_table.txt norm GSM985169_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 72 not specified not specified 1 1 not specified not specified BRCA2 3 BRCA2 0 not specified not specified BRCA2 postmenopausal EFO EFO_0002721 not specified BRCA2 c.2808_2811delACAA, Exon11, p.(Ala938Profs*21) LumB 0 1 28 invasive ductal carcinoma EFO EFO_0000186 GSM985168 2 A016 Universal Human Reference RNA (Stratagene) 046a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985168 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985168 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985168 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985168_046a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985168_sample_table.txt norm GSM985168_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985168 1 A016 Breast tumor tissue 046a 39 1 1 Sporadic 1 BRCA1 0 0 Premenopausal BRCA1 c.2476delA, Exon11, p.(Thr826Glnfs*20) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 15 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985168 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985168 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985168 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985168_046a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985168_sample_table.txt norm GSM985168_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 39 not specified not specified 1 1 not specified Sporadic not specified 1 BRCA1 0 0 not specified not specified Premenopausal not specified BRCA1 c.2476delA, Exon11, p.(Thr826Glnfs*20) LumB 0 0 15 invasive ductal carcinoma EFO EFO_0000186 GSM985167 2 A006 Universal Human Reference RNA (Stratagene) 045a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985167 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985167 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985167 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985167_045a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985167_sample_table.txt norm GSM985167_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985167 1 A006 Breast tumor tissue 045a 52 BRCA1 0 0 BRCA1 3 BRCA1 0 Premenopausal BRCA1 c.5089T>C, Exon18, p.(Cys1697Arg) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 23 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985167 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985167 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985167 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985167_045a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985167_sample_table.txt norm GSM985167_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 52 not specified BRCA1 0 0 not specified BRCA1 not specified 3 BRCA1 0 not specified not specified not specified Premenopausal not specified BRCA1 c.5089T>C, Exon18, p.(Cys1697Arg) basal EFO EFO_0001654 0 0 23 invasive ductal carcinoma EFO EFO_0000186 GSM985166 1 K145 Breast tumor tissue 044a 76 Sporadic 0 0 BRCA1 Sporadic Sporadic 0 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985166 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985166 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985166 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985166_044a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985166_sample_table.txt norm GSM985166_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 76 not specified Sporadic 0 0 not specified BRCA1 Sporadic not specified Sporadic 0 not specified not specified not specified not specified not specified not specified basal EFO EFO_0001654 0 0 not specified invasive ductal carcinoma EFO EFO_0000186 GSM985166 2 K145 Universal Human Reference RNA (Stratagene) 044a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985166 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985166 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985166 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985166_044a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985166_sample_table.txt norm GSM985166_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985165 2 A124 Universal Human Reference RNA (Stratagene) 043a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985165 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985165 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985165 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985165_043a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985165_sample_table.txt norm GSM985165_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985165 1 A124 Breast tumor tissue 043a 36 1 1 Sporadic 3 BRCA1 1 Premenopausal BRCA1 c.3400G>T, Exon11, p.(Glu1134*) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 1 14 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985165 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985165 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985165 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985165_043a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985165_sample_table.txt norm GSM985165_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 36 not specified not specified 1 1 not specified Sporadic not specified 3 BRCA1 1 not specified not specified not specified Premenopausal not specified BRCA1 c.3400G>T, Exon11, p.(Glu1134*) Her2 1 not specified 14 invasive ductal carcinoma EFO EFO_0000186 GSM985164 2 K050 Universal Human Reference RNA (Stratagene) 042a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985164 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985164 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985164 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985164_042a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985164_sample_table.txt norm GSM985164_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985164 1 K050 Breast tumor tissue 042a 67 1 1 Sporadic Sporadic 1 Sporadic 1 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 30 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985164 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985164 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985164 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985164_042a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985164_sample_table.txt norm GSM985164_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 67 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 1 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 30 invasive ductal carcinoma EFO EFO_0000186 GSM985163 2 K170 Universal Human Reference RNA (Stratagene) 041a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985163 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985163 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985163 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985163_041a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985163_sample_table.txt norm GSM985163_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985163 1 K170 Breast tumor tissue 041a 69 Sporadic 0 0 BRCA1 Sporadic 3 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 25 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985163 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985163 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985163 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985163_041a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985163_sample_table.txt norm GSM985163_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 69 not specified Sporadic 0 0 not specified BRCA1 Sporadic 3 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified basal EFO EFO_0001654 0 0 25 invasive ductal carcinoma EFO EFO_0000186 GSM985162 2 K180 Universal Human Reference RNA (Stratagene) 039a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985162 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985162 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985162 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985162_039a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985162_sample_table.txt norm GSM985162_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985162 1 K180 Breast tumor tissue 039a 69 1 1 Sporadic Sporadic 2 Sporadic 0 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 15 invasive lobular carcinoma EFO EFO_0000553 P-GSE49481-2 ArrayExpress GSM985162 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985162 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985162 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985162_039a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985162_sample_table.txt norm GSM985162_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 69 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 15 invasive lobular carcinoma EFO EFO_0000553 GSM985161 2 K185 Universal Human Reference RNA (Stratagene) 038a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985161 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985161 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985161 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985161_038a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985161_sample_table.txt norm GSM985161_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985161 1 K185 Breast tumor tissue 038a 53 1 1 Sporadic Sporadic Sporadic 0 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 0 7 Tubular Carcinoma EFO EFO_0000228 P-GSE49481-2 ArrayExpress GSM985161 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985161 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985161 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985161_038a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985161_sample_table.txt norm GSM985161_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 53 not specified not specified 1 1 not specified Sporadic Sporadic not specified Sporadic 0 0 not specified not specified Premenopausal not specified not specified LumA 1 0 7 Tubular Carcinoma EFO EFO_0000228 GSM985160 1 K054 Breast tumor tissue 037a 82 1 1 Sporadic Sporadic 3 Sporadic 0 Sporadic Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 0 27 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985160 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985160 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985160 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985160_037a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985160_sample_table.txt norm GSM985160_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 82 not specified not specified 1 1 not specified Sporadic Sporadic 3 Sporadic 0 not specified not specified Sporadic Perimenopausal not specified not specified LumB 1 0 27 invasive ductal carcinoma EFO EFO_0000186 GSM985160 2 K054 Universal Human Reference RNA (Stratagene) 037a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985160 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985160 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985160 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985160_037a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985160_sample_table.txt norm GSM985160_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985159 1 K033 Breast tumor tissue 036a 69 1 1 Sporadic BRCA2 2 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 11 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985159 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985159 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985159 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985159_036a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985159_sample_table.txt norm GSM985159_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 69 not specified not specified 1 1 not specified Sporadic BRCA2 2 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 1 11 invasive ductal carcinoma EFO EFO_0000186 GSM985159 2 K033 Universal Human Reference RNA (Stratagene) 036a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985159 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985159 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985159 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985159_036a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985159_sample_table.txt norm GSM985159_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985158 2 K042 Universal Human Reference RNA (Stratagene) 035a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985158 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985158 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985158 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985158_035a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985158_sample_table.txt norm GSM985158_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985158 1 K042 Breast tumor tissue 035a 45 1 1 Sporadic Sporadic 1 Sporadic 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 0 17 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985158 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985158 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985158 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985158_035a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985158_sample_table.txt norm GSM985158_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 45 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 1 0 17 invasive ductal carcinoma EFO EFO_0000186 GSM985157 2 K027 Universal Human Reference RNA (Stratagene) 033a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985157 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985157 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985157 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985157_033a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985157_sample_table.txt norm GSM985157_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985157 1 K027 Breast tumor tissue 033a 77 1 1 BRCA1 BRCA2 2 Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 25 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985157 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985157 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985157 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985157_033a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985157_sample_table.txt norm GSM985157_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 77 not specified not specified 1 1 not specified BRCA1 BRCA2 2 Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 1 1 25 invasive ductal carcinoma EFO EFO_0000186 GSM985156 2 A134 Universal Human Reference RNA (Stratagene) 032a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985156 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985156 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985156 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985156_032a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985156_sample_table.txt norm GSM985156_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985156 1 A134 Breast tumor tissue 032a 38 BRCA1 0 0 BRCA1 3 BRCA1 0 0 Premenopausal BRCA1 c.5266dupC, Exon20, p.(Gln1756Profs*74) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 16 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985156 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985156 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985156 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985156_032a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985156_sample_table.txt norm GSM985156_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 38 not specified BRCA1 0 0 not specified BRCA1 not specified 3 BRCA1 0 0 not specified not specified Premenopausal not specified BRCA1 c.5266dupC, Exon20, p.(Gln1756Profs*74) basal EFO EFO_0001654 0 0 16 invasive ductal carcinoma EFO EFO_0000186 GSM985155 1 K069 Breast tumor tissue 031a 46 1 1 Sporadic Sporadic 2 Sporadic 0 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 30 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985155 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985155 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985155 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985155_031a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985155_sample_table.txt norm GSM985155_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 46 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 0 not specified not specified Premenopausal not specified not specified LumA 1 1 30 invasive ductal carcinoma EFO EFO_0000186 GSM985155 2 K069 Universal Human Reference RNA (Stratagene) 031a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985155 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985155 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985155 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985155_031a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985155_sample_table.txt norm GSM985155_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985154 1 K148 Breast tumor tissue 030a 60 1 1 Sporadic Sporadic 3 Sporadic 0 Sporadic Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 23 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985154 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985154 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985154 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985154_030a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985154_sample_table.txt norm GSM985154_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 60 not specified not specified 1 1 not specified Sporadic Sporadic 3 Sporadic 0 not specified not specified Sporadic Perimenopausal not specified not specified LumB 1 1 23 invasive ductal carcinoma EFO EFO_0000186 GSM985154 2 K148 Universal Human Reference RNA (Stratagene) 030a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985154 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985154 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985154 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985154_030a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.8.zip P-GSE49481-1 ArrayExpress GSM985154_sample_table.txt norm GSM985154_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985153 2 K165 Universal Human Reference RNA (Stratagene) 029a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985153 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985153 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985153 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985153_029a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985153_sample_table.txt norm GSM985153_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985153 1 K165 Breast tumor tissue 029a 85 1 1 Sporadic Sporadic 1 Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 13 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985153 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985153 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985153 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985153_029a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985153_sample_table.txt norm GSM985153_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 85 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 1 1 13 invasive ductal carcinoma EFO EFO_0000186 GSM985152 1 A133 Breast tumor tissue 028a 57 1 1 BRCA1 3 BRCA1 0 postmenopausal EFO EFO_0002721 BRCA1 c.5266dupC, Exon20, p.(Gln1756Profs*74) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 1 21 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985152 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985152 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985152 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985152_028a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985152_sample_table.txt norm GSM985152_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 57 not specified not specified 1 1 not specified BRCA1 not specified 3 BRCA1 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified BRCA1 c.5266dupC, Exon20, p.(Gln1756Profs*74) LumB 0 1 21 invasive ductal carcinoma EFO EFO_0000186 GSM985152 2 A133 Universal Human Reference RNA (Stratagene) 028a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985152 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985152 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985152 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985152_028a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985152_sample_table.txt norm GSM985152_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985151 2 K188 Universal Human Reference RNA (Stratagene) 027a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985151 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985151 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985151 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985151_027a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985151_sample_table.txt norm GSM985151_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985151 1 K188 Breast tumor tissue 027a 41 1 1 Sporadic Sporadic 1 Sporadic 0 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 12 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985151 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985151 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985151 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985151_027a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985151_sample_table.txt norm GSM985151_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 41 not specified not specified 1 1 not specified Sporadic Sporadic 1 Sporadic 0 0 not specified not specified Premenopausal not specified not specified LumA 1 1 12 invasive ductal carcinoma EFO EFO_0000186 GSM985150 1 A114 Breast tumor tissue 025a 41 1 1 BRCA1 2 BRCA1 0 0 Premenopausal BRCA1 c.1082_1092del, Exon11, p.(Ser361*) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 1 1 11 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985150 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985150 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985150 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985150_025a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985150_sample_table.txt norm GSM985150_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 41 not specified not specified 1 1 not specified BRCA1 not specified 2 BRCA1 0 0 not specified not specified Premenopausal not specified BRCA1 c.1082_1092del, Exon11, p.(Ser361*) LumA 1 1 11 invasive ductal carcinoma EFO EFO_0000186 GSM985150 2 A114 Universal Human Reference RNA (Stratagene) 025a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985150 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985150 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985150 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985150_025a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985150_sample_table.txt norm GSM985150_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985149 2 K175 Universal Human Reference RNA (Stratagene) 023a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985149 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985149 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985149 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985149_023a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985149_sample_table.txt norm GSM985149_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985149 1 K175 Breast tumor tissue 023a 71 1 1 Sporadic Sporadic 3 Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 46 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985149 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985149 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985149 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985149_023a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985149_sample_table.txt norm GSM985149_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 71 not specified not specified 1 1 not specified Sporadic Sporadic 3 Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 0 0 46 invasive ductal carcinoma EFO EFO_0000186 GSM985148 1 K003 Breast tumor tissue 019a 75 1 1 Sporadic Sporadic 2 Sporadic 1 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 32 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985148 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985148 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985148 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985148_019a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985148_sample_table.txt norm GSM985148_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 75 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 1 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 1 1 32 invasive ductal carcinoma EFO EFO_0000186 GSM985148 2 K003 Universal Human Reference RNA (Stratagene) 019a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985148 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985148 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985148 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985148_019a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985148_sample_table.txt norm GSM985148_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985147 1 A015 Breast tumor tissue 018a 46 BRCA1 0 0 BRCA1 BRCA1 0 0 Premenopausal BRCA1 c.5213G>A, Exon20, p.(Gly1738Glu) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 21 Medullary carcinoma P-GSE49481-2 ArrayExpress GSM985147 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985147 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985147 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985147_018a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985147_sample_table.txt norm GSM985147_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 46 not specified BRCA1 0 0 not specified BRCA1 not specified not specified BRCA1 0 0 not specified not specified Premenopausal not specified BRCA1 c.5213G>A, Exon20, p.(Gly1738Glu) basal EFO EFO_0001654 0 0 21 Medullary carcinoma GSM985147 2 A015 Universal Human Reference RNA (Stratagene) 018a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985147 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985147 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985147 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985147_018a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985147_sample_table.txt norm GSM985147_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985146 2 K140 Universal Human Reference RNA (Stratagene) 015a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985146 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985146 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985146 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985146_015a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985146_sample_table.txt norm GSM985146_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985146 1 K140 Breast tumor tissue 015a 79 0 0 Sporadic Sporadic 2 Sporadic 1 Perimenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Her2 0 0 40 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985146 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985146 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985146 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985146_015a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985146_sample_table.txt norm GSM985146_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 79 not specified not specified 0 0 not specified Sporadic Sporadic 2 Sporadic 1 not specified not specified not specified Perimenopausal not specified not specified Her2 0 0 40 invasive ductal carcinoma EFO EFO_0000186 GSM985145 1 K061 Breast tumor tissue 014a 45 1 1 Sporadic Sporadic 3 Sporadic 0 Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 normal EFO http://purl.obolibrary.org/obo/PATO_0000461 1 1 42 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985145 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985145 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985145 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985145_014a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985145_sample_table.txt norm GSM985145_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 45 not specified not specified 1 1 not specified Sporadic Sporadic 3 Sporadic 0 not specified not specified not specified Premenopausal not specified not specified normal EFO http://purl.obolibrary.org/obo/PATO_0000461 1 1 42 invasive ductal carcinoma EFO EFO_0000186 GSM985145 2 K061 Universal Human Reference RNA (Stratagene) 014a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985145 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985145 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985145 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985145_014a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985145_sample_table.txt norm GSM985145_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985144 1 A051 Breast tumor tissue 012a 55 BRCA1 0 0 BRCA1 3 BRCA1 0 postmenopausal EFO EFO_0002721 BRCA1 c.5143A>C, Exon18, p.(Ser1715Arg) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 30 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985144 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985144 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985144 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985144_012a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985144_sample_table.txt norm GSM985144_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 55 not specified BRCA1 0 0 not specified BRCA1 not specified 3 BRCA1 0 not specified not specified not specified postmenopausal EFO EFO_0002721 not specified BRCA1 c.5143A>C, Exon18, p.(Ser1715Arg) basal EFO EFO_0001654 0 0 30 invasive ductal carcinoma EFO EFO_0000186 GSM985144 2 A051 Universal Human Reference RNA (Stratagene) 012a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985144 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985144 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985144 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985144_012a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985144_sample_table.txt norm GSM985144_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985143 2 K136 Universal Human Reference RNA (Stratagene) 011a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985143 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985143 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985143 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985143_011a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985143_sample_table.txt norm GSM985143_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985143 1 K136 Breast tumor tissue 011a 68 1 1 Sporadic Sporadic 2 Sporadic 0 0 postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumA 0 1 7 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985143 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985143 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985143 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985143_011a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985143_sample_table.txt norm GSM985143_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 68 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 0 not specified not specified postmenopausal EFO EFO_0002721 not specified not specified LumA 0 1 7 invasive ductal carcinoma EFO EFO_0000186 GSM985142 2 A122 Universal Human Reference RNA (Stratagene) 007a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985142 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985142 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985142 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985142_007a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985142_sample_table.txt norm GSM985142_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985142 1 A122 Breast tumor tissue 007a 36 BRCA1 0 0 BRCA1 3 BRCA1 0 Premenopausal BRCA1 c.3319G>T, Exon11, p.(Glu1107*) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 basal EFO EFO_0001654 0 0 51 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985142 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985142 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985142 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985142_007a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985142_sample_table.txt norm GSM985142_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 36 not specified BRCA1 0 0 not specified BRCA1 not specified 3 BRCA1 0 not specified not specified not specified Premenopausal not specified BRCA1 c.3319G>T, Exon11, p.(Glu1107*) basal EFO EFO_0001654 0 0 51 invasive ductal carcinoma EFO EFO_0000186 GSM985141 2 K021 Universal Human Reference RNA (Stratagene) 005a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985141 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985141 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985141 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985141_005a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985141_sample_table.txt norm GSM985141_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified GSM985141 1 K021 Breast tumor tissue 005a 49 1 1 Sporadic Sporadic 2 Sporadic 0 Sporadic Premenopausal Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 1 1 20 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985141 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985141 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985141 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985141_005a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985141_sample_table.txt norm GSM985141_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 49 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified Sporadic Premenopausal not specified not specified LumB 1 1 20 invasive ductal carcinoma EFO EFO_0000186 GSM985140 1 K031 Breast tumor tissue 004a 64 1 1 Sporadic Sporadic 2 Sporadic 0 Sporadic postmenopausal EFO EFO_0002721 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 LumB 0 0 6 invasive ductal carcinoma EFO EFO_0000186 P-GSE49481-2 ArrayExpress GSM985140 extract 1 total RNA P-GSE49481-3 ArrayExpress GSM985140 LE 1 Cy5 P-GSE49481-4 ArrayExpress GSM985140 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985140_004a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985140_sample_table.txt norm GSM985140_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip 64 not specified not specified 1 1 not specified Sporadic Sporadic 2 Sporadic 0 not specified not specified Sporadic postmenopausal EFO EFO_0002721 not specified not specified LumB 0 0 6 invasive ductal carcinoma EFO EFO_0000186 GSM985140 2 K031 Universal Human Reference RNA (Stratagene) 004a Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Universal Human Reference RNA (Stratagene) P-GSE49481-2 ArrayExpress GSM985140 extract 2 total RNA P-GSE49481-3 ArrayExpress GSM985140 LE 2 Cy3 P-GSE49481-4 ArrayExpress GSM985140 A-GEOD-15931 ArrayExpress array assay P-GSE49481-5 ArrayExpress GSM985140_004a.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.raw.9.zip P-GSE49481-1 ArrayExpress GSM985140_sample_table.txt norm GSM985140_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49481/E-GEOD-49481.processed.1.zip not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified not specified