Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Provider Characteristics [mammographic dense area] Characteristics [mammographic density] Characteristics [microenvironment subtype] Characteristics [organism] Term Source REF Term Accession Number Characteristics [reference] Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [MAMMOGRAPHIC DENSE AREA] FactorValue [MAMMOGRAPHIC DENSITY] FactorValue [MICROENVIRONMENT SUBTYPE] GSM1195040 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10317 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195040 extract 1 total RNA P-GSE49175-263 ArrayExpress GSM1195040 LE 1 Cy3 P-GSE49175-270 ArrayExpress GSM1195040 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195040_sample_table.txt norm GSM1195040_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195040 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10317 >=median (36.52cm2) >=25% Active;Stromal proportion_tertile2;Epithelial proportion_tertile3;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195040 extract 2 total RNA P-GSE49175-36 ArrayExpress GSM1195040 LE 2 Cy5 P-GSE49175-270 ArrayExpress GSM1195040 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195040_sample_table.txt norm GSM1195040_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active;Stromal proportion_tertile2;Epithelial proportion_tertile3;Adipose proportion_tertile2 GSM1195039 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10314 =25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile2;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195039 extract 2 total RNA P-GSE49175-33 ArrayExpress GSM1195039 LE 2 Cy5 P-GSE49175-269 ArrayExpress GSM1195039 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195039_sample_table.txt norm GSM1195039_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip =25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile2;Adipose proportion_tertile3 GSM1195039 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10314 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195039 extract 1 total RNA P-GSE49175-268 ArrayExpress GSM1195039 LE 1 Cy3 P-GSE49175-269 ArrayExpress GSM1195039 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195039_sample_table.txt norm GSM1195039_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195038 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10310 =median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile2;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195037 extract 2 total RNA P-GSE49175-27 ArrayExpress GSM1195037 LE 2 Cy5 P-GSE49175-266 ArrayExpress GSM1195037 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195037_sample_table.txt norm GSM1195037_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile2;Adipose proportion_tertile3 GSM1195036 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10308 >=median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile3;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195036 extract 2 total RNA P-GSE49175-24 ArrayExpress GSM1195036 LE 2 Cy5 P-GSE49175-265 ArrayExpress GSM1195036 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195036_sample_table.txt norm GSM1195036_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile3;Adipose proportion_tertile2 GSM1195036 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10308 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195036 extract 1 total RNA P-GSE49175-256 ArrayExpress GSM1195036 LE 1 Cy3 P-GSE49175-265 ArrayExpress GSM1195036 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195036_sample_table.txt norm GSM1195036_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195035 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10304 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195035 extract 1 total RNA P-GSE49175-254 ArrayExpress GSM1195035 LE 1 Cy3 P-GSE49175-264 ArrayExpress GSM1195035 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195035_sample_table.txt norm GSM1195035_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195035 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10304 =median (36.52cm2) >=25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile1;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195033 extract 2 total RNA P-GSE49175-259 ArrayExpress GSM1195033 LE 2 Cy5 P-GSE49175-260 ArrayExpress GSM1195033 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195033_sample_table.txt norm GSM1195033_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile1;Adipose proportion_tertile2 GSM1195033 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10284 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195033 extract 1 total RNA P-GSE49175-258 ArrayExpress GSM1195033 LE 1 Cy3 P-GSE49175-260 ArrayExpress GSM1195033 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195033_sample_table.txt norm GSM1195033_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195032 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10276 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195032 extract 1 total RNA P-GSE49175-248 ArrayExpress GSM1195032 LE 1 Cy3 P-GSE49175-257 ArrayExpress GSM1195032 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195032_sample_table.txt norm GSM1195032_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195032 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10276 =median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195031 extract 2 total RNA P-GSE49175-254 ArrayExpress GSM1195031 LE 2 Cy5 P-GSE49175-255 ArrayExpress GSM1195031 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195031_sample_table.txt norm GSM1195031_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 GSM1195030 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10259 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195030 extract 1 total RNA P-GSE49175-243 ArrayExpress GSM1195030 LE 1 Cy3 P-GSE49175-253 ArrayExpress GSM1195030 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195030_sample_table.txt norm GSM1195030_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195030 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10259 =median (36.52cm2) <25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile1;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195029 extract 2 total RNA P-GSE49175-250 ArrayExpress GSM1195029 LE 2 Cy5 P-GSE49175-251 ArrayExpress GSM1195029 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195029_sample_table.txt norm GSM1195029_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) <25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile1;Adipose proportion_tertile2 GSM1195029 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10254 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195029 extract 1 total RNA P-GSE49175-241 ArrayExpress GSM1195029 LE 1 Cy3 P-GSE49175-251 ArrayExpress GSM1195029 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195029_sample_table.txt norm GSM1195029_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195028 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10247 >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195028 extract 2 total RNA P-GSE49175-248 ArrayExpress GSM1195028 LE 2 Cy5 P-GSE49175-249 ArrayExpress GSM1195028 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195028_sample_table.txt norm GSM1195028_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 GSM1195028 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10247 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195028 extract 1 total RNA P-GSE49175-237 ArrayExpress GSM1195028 LE 1 Cy3 P-GSE49175-249 ArrayExpress GSM1195028 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195028_sample_table.txt norm GSM1195028_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195027 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10246 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195027 extract 1 total RNA P-GSE49175-245 ArrayExpress GSM1195027 LE 1 Cy3 P-GSE49175-247 ArrayExpress GSM1195027 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195027_sample_table.txt norm GSM1195027_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195027 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10246 =median (36.52cm2) >=25% Inactive Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195025 extract 2 total RNA P-GSE49175-241 ArrayExpress GSM1195025 LE 2 Cy5 P-GSE49175-242 ArrayExpress GSM1195025 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195025_sample_table.txt norm GSM1195025_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive GSM1195025 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10243 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195025 extract 1 total RNA P-GSE49175-232 ArrayExpress GSM1195025 LE 1 Cy3 P-GSE49175-242 ArrayExpress GSM1195025 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195025_sample_table.txt norm GSM1195025_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195024 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10242 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195024 extract 1 total RNA P-GSE49175-229 ArrayExpress GSM1195024 LE 1 Cy3 P-GSE49175-240 ArrayExpress GSM1195024 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195024_sample_table.txt norm GSM1195024_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195024 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10242 >=median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile1;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195024 extract 2 total RNA P-GSE49175-239 ArrayExpress GSM1195024 LE 2 Cy5 P-GSE49175-240 ArrayExpress GSM1195024 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195024_sample_table.txt norm GSM1195024_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile1;Adipose proportion_tertile3 GSM1195023 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10240 =25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195023 extract 2 total RNA P-GSE49175-237 ArrayExpress GSM1195023 LE 2 Cy5 P-GSE49175-238 ArrayExpress GSM1195023 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195023_sample_table.txt norm GSM1195023_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip =25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 GSM1195023 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10240 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195023 extract 1 total RNA P-GSE49175-227 ArrayExpress GSM1195023 LE 1 Cy3 P-GSE49175-238 ArrayExpress GSM1195023 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195023_sample_table.txt norm GSM1195023_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195022 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10235 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195022 extract 1 total RNA P-GSE49175-234 ArrayExpress GSM1195022 LE 1 Cy3 P-GSE49175-236 ArrayExpress GSM1195022 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195022_sample_table.txt norm GSM1195022_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195022 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10235 =median (36.52cm2) >=25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile3;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195019 extract 2 total RNA P-GSE49175-227 ArrayExpress GSM1195019 LE 2 Cy5 P-GSE49175-228 ArrayExpress GSM1195019 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195019_sample_table.txt norm GSM1195019_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile3;Adipose proportion_tertile2 GSM1195018 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10225 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195018 extract 1 total RNA P-GSE49175-220 ArrayExpress GSM1195018 LE 1 Cy3 P-GSE49175-225 ArrayExpress GSM1195018 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195018_sample_table.txt norm GSM1195018_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195018 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10225 >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile3;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195018 extract 2 total RNA P-GSE49175-224 ArrayExpress GSM1195018 LE 2 Cy5 P-GSE49175-225 ArrayExpress GSM1195018 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195018_sample_table.txt norm GSM1195018_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile3;Adipose proportion_tertile1 GSM1195017 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10206 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195017 extract 1 total RNA P-GSE49175-216 ArrayExpress GSM1195017 LE 1 Cy3 P-GSE49175-223 ArrayExpress GSM1195017 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195017_sample_table.txt norm GSM1195017_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195017 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10206 >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile2;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195017 extract 2 total RNA P-GSE49175-222 ArrayExpress GSM1195017 LE 2 Cy5 P-GSE49175-223 ArrayExpress GSM1195017 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195017_sample_table.txt norm GSM1195017_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile2;Adipose proportion_tertile2 GSM1195016 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10198 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195016 extract 1 total RNA P-GSE49175-212 ArrayExpress GSM1195016 LE 1 Cy3 P-GSE49175-221 ArrayExpress GSM1195016 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195016_sample_table.txt norm GSM1195016_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195016 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10198 =25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195016 extract 2 total RNA P-GSE49175-220 ArrayExpress GSM1195016 LE 2 Cy5 P-GSE49175-221 ArrayExpress GSM1195016 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195016_sample_table.txt norm GSM1195016_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip =25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 GSM1195015 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10196 =25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile1;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195015 extract 2 total RNA P-GSE49175-218 ArrayExpress GSM1195015 LE 2 Cy5 P-GSE49175-219 ArrayExpress GSM1195015 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195015_sample_table.txt norm GSM1195015_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip =25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile1;Adipose proportion_tertile2 GSM1195015 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10196 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195015 extract 1 total RNA P-GSE49175-208 ArrayExpress GSM1195015 LE 1 Cy3 P-GSE49175-219 ArrayExpress GSM1195015 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195015_sample_table.txt norm GSM1195015_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195014 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10194 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195014 extract 1 total RNA P-GSE49175-206 ArrayExpress GSM1195014 LE 1 Cy3 P-GSE49175-217 ArrayExpress GSM1195014 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195014_sample_table.txt norm GSM1195014_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195014 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10194 =median (36.52cm2) >=25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile1;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195012 extract 2 total RNA P-GSE49175-212 ArrayExpress GSM1195012 LE 2 Cy5 P-GSE49175-213 ArrayExpress GSM1195012 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195012_sample_table.txt norm GSM1195012_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile1;Adipose proportion_tertile2 GSM1195011 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10175 =median (36.52cm2) <25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile2;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195009 extract 2 total RNA P-GSE49175-206 ArrayExpress GSM1195009 LE 2 Cy5 P-GSE49175-207 ArrayExpress GSM1195009 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195009_sample_table.txt norm GSM1195009_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) <25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile2;Adipose proportion_tertile3 GSM1195009 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10171 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195009 extract 1 total RNA P-GSE49175-196 ArrayExpress GSM1195009 LE 1 Cy3 P-GSE49175-207 ArrayExpress GSM1195009 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195009_sample_table.txt norm GSM1195009_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195008 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10169 >=median (36.52cm2) >=25% Active Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195008 extract 2 total RNA P-GSE49175-204 ArrayExpress GSM1195008 LE 2 Cy5 P-GSE49175-205 ArrayExpress GSM1195008 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195008_sample_table.txt norm GSM1195008_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active GSM1195008 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10169 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195008 extract 1 total RNA P-GSE49175-193 ArrayExpress GSM1195008 LE 1 Cy3 P-GSE49175-205 ArrayExpress GSM1195008 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195008_sample_table.txt norm GSM1195008_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195007 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10168 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195007 extract 1 total RNA P-GSE49175-191 ArrayExpress GSM1195007 LE 1 Cy3 P-GSE49175-203 ArrayExpress GSM1195007 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195007_sample_table.txt norm GSM1195007_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195007 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10168 =median (36.52cm2) >=25% Inactive Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195006 extract 2 total RNA P-GSE49175-200 ArrayExpress GSM1195006 LE 2 Cy5 P-GSE49175-201 ArrayExpress GSM1195006 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195006_sample_table.txt norm GSM1195006_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive GSM1195006 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10163 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195006 extract 1 total RNA P-GSE49175-188 ArrayExpress GSM1195006 LE 1 Cy3 P-GSE49175-201 ArrayExpress GSM1195006 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195006_sample_table.txt norm GSM1195006_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195005 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10161 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195005 extract 1 total RNA P-GSE49175-185 ArrayExpress GSM1195005 LE 1 Cy3 P-GSE49175-199 ArrayExpress GSM1195005 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195005_sample_table.txt norm GSM1195005_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195005 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10161 >=median (36.52cm2) <25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile3;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195005 extract 2 total RNA P-GSE49175-198 ArrayExpress GSM1195005 LE 2 Cy5 P-GSE49175-199 ArrayExpress GSM1195005 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195005_sample_table.txt norm GSM1195005_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) <25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile3;Adipose proportion_tertile1 GSM1195004 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10156 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1195004 extract 1 total RNA P-GSE49175-195 ArrayExpress GSM1195004 LE 1 Cy3 P-GSE49175-197 ArrayExpress GSM1195004 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195004_sample_table.txt norm GSM1195004_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1195004 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10156 =25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile1;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195004 extract 2 total RNA P-GSE49175-196 ArrayExpress GSM1195004 LE 2 Cy5 P-GSE49175-197 ArrayExpress GSM1195004 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195004_sample_table.txt norm GSM1195004_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip =25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile1;Adipose proportion_tertile3 GSM1195003 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10150 =median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1195001 extract 2 total RNA P-GSE49175-188 ArrayExpress GSM1195001 LE 2 Cy5 P-GSE49175-189 ArrayExpress GSM1195001 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1195001_sample_table.txt norm GSM1195001_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 GSM1195000 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10145 =25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194999 extract 2 total RNA P-GSE49175-182 ArrayExpress GSM1194999 LE 2 Cy5 P-GSE49175-183 ArrayExpress GSM1194999 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194999_sample_table.txt norm GSM1194999_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip =25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile2 GSM1194998 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10131 =median (36.52cm2) >=25% Active;Stromal proportion_tertile2;Epithelial proportion_tertile3;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194995 extract 2 total RNA P-GSE49175-173 ArrayExpress GSM1194995 LE 2 Cy5 P-GSE49175-174 ArrayExpress GSM1194995 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194995_sample_table.txt norm GSM1194995_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active;Stromal proportion_tertile2;Epithelial proportion_tertile3;Adipose proportion_tertile2 GSM1194994 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10115 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194994 extract 1 total RNA P-GSE49175-170 ArrayExpress GSM1194994 LE 1 Cy3 P-GSE49175-172 ArrayExpress GSM1194994 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194994_sample_table.txt norm GSM1194994_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194994 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10115 =median (36.52cm2) >=25% Inactive Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194992 extract 2 total RNA P-GSE49175-166 ArrayExpress GSM1194992 LE 2 Cy5 P-GSE49175-167 ArrayExpress GSM1194992 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194992_sample_table.txt norm GSM1194992_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive GSM1194992 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10104 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194992 extract 1 total RNA P-GSE49175-155 ArrayExpress GSM1194992 LE 1 Cy3 P-GSE49175-167 ArrayExpress GSM1194992 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194992_sample_table.txt norm GSM1194992_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194991 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10097 =25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194991 extract 2 total RNA P-GSE49175-164 ArrayExpress GSM1194991 LE 2 Cy5 P-GSE49175-165 ArrayExpress GSM1194991 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194991_sample_table.txt norm GSM1194991_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip =25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 GSM1194991 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10097 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194991 extract 1 total RNA P-GSE49175-163 ArrayExpress GSM1194991 LE 1 Cy3 P-GSE49175-165 ArrayExpress GSM1194991 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194991_sample_table.txt norm GSM1194991_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194990 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10091 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194990 extract 1 total RNA P-GSE49175-160 ArrayExpress GSM1194990 LE 1 Cy3 P-GSE49175-162 ArrayExpress GSM1194990 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194990_sample_table.txt norm GSM1194990_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194990 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10091 >=median (36.52cm2) >=25% Active Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194990 extract 2 total RNA P-GSE49175-161 ArrayExpress GSM1194990 LE 2 Cy5 P-GSE49175-162 ArrayExpress GSM1194990 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194990_sample_table.txt norm GSM1194990_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active GSM1194989 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10083 =25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile2;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194989 extract 2 total RNA P-GSE49175-158 ArrayExpress GSM1194989 LE 2 Cy5 P-GSE49175-159 ArrayExpress GSM1194989 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194989_sample_table.txt norm GSM1194989_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip =25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile2;Adipose proportion_tertile2 GSM1194989 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10083 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194989 extract 1 total RNA P-GSE49175-157 ArrayExpress GSM1194989 LE 1 Cy3 P-GSE49175-159 ArrayExpress GSM1194989 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194989_sample_table.txt norm GSM1194989_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194988 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10077 >=median (36.52cm2) >=25% Inactive Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194988 extract 2 total RNA P-GSE49175-155 ArrayExpress GSM1194988 LE 2 Cy5 P-GSE49175-156 ArrayExpress GSM1194988 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194988_sample_table.txt norm GSM1194988_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive GSM1194988 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10077 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194988 extract 1 total RNA P-GSE49175-150 ArrayExpress GSM1194988 LE 1 Cy3 P-GSE49175-156 ArrayExpress GSM1194988 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194988_sample_table.txt norm GSM1194988_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194987 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10075 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194987 extract 1 total RNA P-GSE49175-152 ArrayExpress GSM1194987 LE 1 Cy3 P-GSE49175-154 ArrayExpress GSM1194987 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194987_sample_table.txt norm GSM1194987_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194987 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10075 =median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194986 extract 2 total RNA P-GSE49175-150 ArrayExpress GSM1194986 LE 2 Cy5 P-GSE49175-151 ArrayExpress GSM1194986 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194986_sample_table.txt norm GSM1194986_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile2 GSM1194985 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10066 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194985 extract 1 total RNA P-GSE49175-146 ArrayExpress GSM1194985 LE 1 Cy3 P-GSE49175-148 ArrayExpress GSM1194985 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194985_sample_table.txt norm GSM1194985_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194985 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10066 >=median (36.52cm2) >=25% Inactive Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194985 extract 2 total RNA P-GSE49175-147 ArrayExpress GSM1194985 LE 2 Cy5 P-GSE49175-148 ArrayExpress GSM1194985 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194985_sample_table.txt norm GSM1194985_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive GSM1194984 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10062 >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194984 extract 2 total RNA P-GSE49175-144 ArrayExpress GSM1194984 LE 2 Cy5 P-GSE49175-145 ArrayExpress GSM1194984 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194984_sample_table.txt norm GSM1194984_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 GSM1194984 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10062 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194984 extract 1 total RNA P-GSE49175-22 ArrayExpress GSM1194984 LE 1 Cy3 P-GSE49175-145 ArrayExpress GSM1194984 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194984_sample_table.txt norm GSM1194984_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194983 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10060 =25% Active;Stromal proportion_tertile2;Epithelial proportion_tertile1;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194983 extract 2 total RNA P-GSE49175-142 ArrayExpress GSM1194983 LE 2 Cy5 P-GSE49175-143 ArrayExpress GSM1194983 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194983_sample_table.txt norm GSM1194983_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip =25% Active;Stromal proportion_tertile2;Epithelial proportion_tertile1;Adipose proportion_tertile2 GSM1194983 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10060 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194983 extract 1 total RNA P-GSE49175-19 ArrayExpress GSM1194983 LE 1 Cy3 P-GSE49175-143 ArrayExpress GSM1194983 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194983_sample_table.txt norm GSM1194983_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194982 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10044 >=median (36.52cm2) >=25% Active Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194982 extract 2 total RNA P-GSE49175-140 ArrayExpress GSM1194982 LE 2 Cy5 P-GSE49175-141 ArrayExpress GSM1194982 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194982_sample_table.txt norm GSM1194982_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active GSM1194982 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10044 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194982 extract 1 total RNA P-GSE49175-12 ArrayExpress GSM1194982 LE 1 Cy3 P-GSE49175-141 ArrayExpress GSM1194982 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194982_sample_table.txt norm GSM1194982_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194766 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10701 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194766 extract 1 total RNA P-GSE49175-130 ArrayExpress GSM1194766 LE 1 Cy3 P-GSE49175-139 ArrayExpress GSM1194766 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194766_sample_table.txt norm GSM1194766_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194766 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10701 =median (36.52cm2) >=25% Inactive Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194763 extract 2 total RNA P-GSE49175-132 ArrayExpress GSM1194763 LE 2 Cy5 P-GSE49175-133 ArrayExpress GSM1194763 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194763_sample_table.txt norm GSM1194763_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive GSM1194763 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10689 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194763 extract 1 total RNA P-GSE49175-124 ArrayExpress GSM1194763 LE 1 Cy3 P-GSE49175-133 ArrayExpress GSM1194763 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194763_sample_table.txt norm GSM1194763_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194762 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10685 =median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194761 extract 2 total RNA P-GSE49175-128 ArrayExpress GSM1194761 LE 2 Cy5 P-GSE49175-129 ArrayExpress GSM1194761 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194761_sample_table.txt norm GSM1194761_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 GSM1194760 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10555 =median (36.52cm2) >=25% Active Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194759 extract 2 total RNA P-GSE49175-124 ArrayExpress GSM1194759 LE 2 Cy5 P-GSE49175-125 ArrayExpress GSM1194759 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194759_sample_table.txt norm GSM1194759_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active GSM1194758 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10547 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194758 extract 1 total RNA P-GSE49175-111 ArrayExpress GSM1194758 LE 1 Cy3 P-GSE49175-123 ArrayExpress GSM1194758 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194758_sample_table.txt norm GSM1194758_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194758 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10547 =25% Inactive Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194758 extract 2 total RNA P-GSE49175-122 ArrayExpress GSM1194758 LE 2 Cy5 P-GSE49175-123 ArrayExpress GSM1194758 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194758_sample_table.txt norm GSM1194758_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip =25% Inactive GSM1194757 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10522 =25% Inactive;Stromal proportion_tertile1;Epithelial proportion_tertile2;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194757 extract 2 total RNA P-GSE49175-120 ArrayExpress GSM1194757 LE 2 Cy5 P-GSE49175-121 ArrayExpress GSM1194757 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194757_sample_table.txt norm GSM1194757_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip =25% Inactive;Stromal proportion_tertile1;Epithelial proportion_tertile2;Adipose proportion_tertile3 GSM1194757 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10522 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194757 extract 1 total RNA P-GSE49175-119 ArrayExpress GSM1194757 LE 1 Cy3 P-GSE49175-121 ArrayExpress GSM1194757 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194757_sample_table.txt norm GSM1194757_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194756 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10520 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194756 extract 1 total RNA P-GSE49175-108 ArrayExpress GSM1194756 LE 1 Cy3 P-GSE49175-118 ArrayExpress GSM1194756 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194756_sample_table.txt norm GSM1194756_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194756 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10520 =25% Active Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194755 extract 2 total RNA P-GSE49175-115 ArrayExpress GSM1194755 LE 2 Cy5 P-GSE49175-116 ArrayExpress GSM1194755 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194755_sample_table.txt norm GSM1194755_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip =25% Active GSM1194755 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10518 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194755 extract 1 total RNA P-GSE49175-105 ArrayExpress GSM1194755 LE 1 Cy3 P-GSE49175-116 ArrayExpress GSM1194755 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194755_sample_table.txt norm GSM1194755_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194754 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10513 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194754 extract 1 total RNA P-GSE49175-103 ArrayExpress GSM1194754 LE 1 Cy3 P-GSE49175-114 ArrayExpress GSM1194754 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194754_sample_table.txt norm GSM1194754_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194754 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10513 =median (36.52cm2) <25% Active;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194753 extract 2 total RNA P-GSE49175-111 ArrayExpress GSM1194753 LE 2 Cy5 P-GSE49175-112 ArrayExpress GSM1194753 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194753_sample_table.txt norm GSM1194753_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) <25% Active;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 GSM1194753 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10511 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194753 extract 1 total RNA P-GSE49175-110 ArrayExpress GSM1194753 LE 1 Cy3 P-GSE49175-112 ArrayExpress GSM1194753 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194753_sample_table.txt norm GSM1194753_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194752 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10506 >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194752 extract 2 total RNA P-GSE49175-108 ArrayExpress GSM1194752 LE 2 Cy5 P-GSE49175-109 ArrayExpress GSM1194752 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194752_sample_table.txt norm GSM1194752_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 GSM1194752 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10506 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194752 extract 1 total RNA P-GSE49175-107 ArrayExpress GSM1194752 LE 1 Cy3 P-GSE49175-109 ArrayExpress GSM1194752 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194752_sample_table.txt norm GSM1194752_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194751 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10505 =median (36.52cm2) <25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile2;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194750 extract 2 total RNA P-GSE49175-103 ArrayExpress GSM1194750 LE 2 Cy5 P-GSE49175-104 ArrayExpress GSM1194750 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194750_sample_table.txt norm GSM1194750_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) <25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile2;Adipose proportion_tertile3 GSM1194749 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10486 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194749 extract 1 total RNA P-GSE49175-93 ArrayExpress GSM1194749 LE 1 Cy3 P-GSE49175-102 ArrayExpress GSM1194749 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194749_sample_table.txt norm GSM1194749_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194749 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10486 >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194749 extract 2 total RNA P-GSE49175-101 ArrayExpress GSM1194749 LE 2 Cy5 P-GSE49175-102 ArrayExpress GSM1194749 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194749_sample_table.txt norm GSM1194749_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 GSM1194748 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10482 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194748 extract 1 total RNA P-GSE49175-88 ArrayExpress GSM1194748 LE 1 Cy3 P-GSE49175-100 ArrayExpress GSM1194748 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194748_sample_table.txt norm GSM1194748_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194748 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10482 =median (36.52cm2) >=25% Inactive Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194744 extract 2 total RNA P-GSE49175-91 ArrayExpress GSM1194744 LE 2 Cy5 P-GSE49175-92 ArrayExpress GSM1194744 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194744_sample_table.txt norm GSM1194744_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive GSM1194743 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10440 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194743 extract 1 total RNA P-GSE49175-80 ArrayExpress GSM1194743 LE 1 Cy3 P-GSE49175-89 ArrayExpress GSM1194743 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194743_sample_table.txt norm GSM1194743_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194743 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10440 >=median (36.52cm2) >=25% Inactive Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194743 extract 2 total RNA P-GSE49175-88 ArrayExpress GSM1194743 LE 2 Cy5 P-GSE49175-89 ArrayExpress GSM1194743 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194743_sample_table.txt norm GSM1194743_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive GSM1194742 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10438 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194742 extract 1 total RNA P-GSE49175-78 ArrayExpress GSM1194742 LE 1 Cy3 P-GSE49175-87 ArrayExpress GSM1194742 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194742_sample_table.txt norm GSM1194742_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194742 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10438 =median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile1;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194741 extract 2 total RNA P-GSE49175-84 ArrayExpress GSM1194741 LE 2 Cy5 P-GSE49175-85 ArrayExpress GSM1194741 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194741_sample_table.txt norm GSM1194741_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile1;Adipose proportion_tertile3 GSM1194741 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10437 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194741 extract 1 total RNA P-GSE49175-76 ArrayExpress GSM1194741 LE 1 Cy3 P-GSE49175-85 ArrayExpress GSM1194741 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194741_sample_table.txt norm GSM1194741_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194740 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10432 =median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile2;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194739 extract 2 total RNA P-GSE49175-80 ArrayExpress GSM1194739 LE 2 Cy5 P-GSE49175-81 ArrayExpress GSM1194739 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194739_sample_table.txt norm GSM1194739_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile2;Adipose proportion_tertile3 GSM1194739 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10423 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194739 extract 1 total RNA P-GSE49175-70 ArrayExpress GSM1194739 LE 1 Cy3 P-GSE49175-81 ArrayExpress GSM1194739 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194739_sample_table.txt norm GSM1194739_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194738 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10422 >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194738 extract 2 total RNA P-GSE49175-78 ArrayExpress GSM1194738 LE 2 Cy5 P-GSE49175-79 ArrayExpress GSM1194738 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194738_sample_table.txt norm GSM1194738_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 GSM1194738 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10422 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194738 extract 1 total RNA P-GSE49175-68 ArrayExpress GSM1194738 LE 1 Cy3 P-GSE49175-79 ArrayExpress GSM1194738 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194738_sample_table.txt norm GSM1194738_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194737 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10420 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194737 extract 1 total RNA P-GSE49175-65 ArrayExpress GSM1194737 LE 1 Cy3 P-GSE49175-77 ArrayExpress GSM1194737 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194737_sample_table.txt norm GSM1194737_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194737 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10420 =median (36.52cm2) >=25% Inactive Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194735 extract 2 total RNA P-GSE49175-72 ArrayExpress GSM1194735 LE 2 Cy5 P-GSE49175-73 ArrayExpress GSM1194735 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194735_sample_table.txt norm GSM1194735_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive GSM1194734 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10408 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194734 extract 1 total RNA P-GSE49175-59 ArrayExpress GSM1194734 LE 1 Cy3 P-GSE49175-71 ArrayExpress GSM1194734 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194734_sample_table.txt norm GSM1194734_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194734 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10408 >=median (36.52cm2) <25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile3;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194734 extract 2 total RNA P-GSE49175-70 ArrayExpress GSM1194734 LE 2 Cy5 P-GSE49175-71 ArrayExpress GSM1194734 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194734_sample_table.txt norm GSM1194734_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) <25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile3;Adipose proportion_tertile2 GSM1194733 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10406 >=median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile1;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194733 extract 2 total RNA P-GSE49175-68 ArrayExpress GSM1194733 LE 2 Cy5 P-GSE49175-69 ArrayExpress GSM1194733 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194733_sample_table.txt norm GSM1194733_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile1;Adipose proportion_tertile3 GSM1194733 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10406 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194733 extract 1 total RNA P-GSE49175-67 ArrayExpress GSM1194733 LE 1 Cy3 P-GSE49175-69 ArrayExpress GSM1194733 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194733_sample_table.txt norm GSM1194733_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194732 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10404 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194732 extract 1 total RNA P-GSE49175-56 ArrayExpress GSM1194732 LE 1 Cy3 P-GSE49175-66 ArrayExpress GSM1194732 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194732_sample_table.txt norm GSM1194732_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194732 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10404 >=median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile1;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194732 extract 2 total RNA P-GSE49175-65 ArrayExpress GSM1194732 LE 2 Cy5 P-GSE49175-66 ArrayExpress GSM1194732 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194732_sample_table.txt norm GSM1194732_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile1;Adipose proportion_tertile3 GSM1194731 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10402 >=median (36.52cm2) <25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile3;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194731 extract 2 total RNA P-GSE49175-63 ArrayExpress GSM1194731 LE 2 Cy5 P-GSE49175-64 ArrayExpress GSM1194731 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194731_sample_table.txt norm GSM1194731_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) <25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile3;Adipose proportion_tertile3 GSM1194731 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10402 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194731 extract 1 total RNA P-GSE49175-54 ArrayExpress GSM1194731 LE 1 Cy3 P-GSE49175-64 ArrayExpress GSM1194731 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194731_sample_table.txt norm GSM1194731_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194730 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10394 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194730 extract 1 total RNA P-GSE49175-52 ArrayExpress GSM1194730 LE 1 Cy3 P-GSE49175-62 ArrayExpress GSM1194730 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194730_sample_table.txt norm GSM1194730_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194730 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10394 >=median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile1;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194730 extract 2 total RNA P-GSE49175-61 ArrayExpress GSM1194730 LE 2 Cy5 P-GSE49175-62 ArrayExpress GSM1194730 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194730_sample_table.txt norm GSM1194730_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile1;Adipose proportion_tertile3 GSM1194729 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10392 >=median (36.52cm2) >=25% Active Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194729 extract 2 total RNA P-GSE49175-59 ArrayExpress GSM1194729 LE 2 Cy5 P-GSE49175-60 ArrayExpress GSM1194729 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194729_sample_table.txt norm GSM1194729_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active GSM1194729 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10392 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194729 extract 1 total RNA P-GSE49175-58 ArrayExpress GSM1194729 LE 1 Cy3 P-GSE49175-60 ArrayExpress GSM1194729 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194729_sample_table.txt norm GSM1194729_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194728 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10377 =25% Active;Stromal proportion_tertile3;Epithelial proportion_tertile3;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194728 extract 2 total RNA P-GSE49175-56 ArrayExpress GSM1194728 LE 2 Cy5 P-GSE49175-57 ArrayExpress GSM1194728 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194728_sample_table.txt norm GSM1194728_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip =25% Active;Stromal proportion_tertile3;Epithelial proportion_tertile3;Adipose proportion_tertile1 GSM1194728 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10377 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194728 extract 1 total RNA P-GSE49175-50 ArrayExpress GSM1194728 LE 1 Cy3 P-GSE49175-57 ArrayExpress GSM1194728 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194728_sample_table.txt norm GSM1194728_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194727 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10375 >=median (36.52cm2) >=25% Inactive Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194727 extract 2 total RNA P-GSE49175-54 ArrayExpress GSM1194727 LE 2 Cy5 P-GSE49175-55 ArrayExpress GSM1194727 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194727_sample_table.txt norm GSM1194727_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive GSM1194727 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10375 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194727 extract 1 total RNA P-GSE49175-48 ArrayExpress GSM1194727 LE 1 Cy3 P-GSE49175-55 ArrayExpress GSM1194727 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194727_sample_table.txt norm GSM1194727_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194726 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10370 >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194726 extract 2 total RNA P-GSE49175-52 ArrayExpress GSM1194726 LE 2 Cy5 P-GSE49175-53 ArrayExpress GSM1194726 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194726_sample_table.txt norm GSM1194726_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 GSM1194726 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10370 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194726 extract 1 total RNA P-GSE49175-45 ArrayExpress GSM1194726 LE 1 Cy3 P-GSE49175-53 ArrayExpress GSM1194726 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194726_sample_table.txt norm GSM1194726_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194725 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10365 >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194725 extract 2 total RNA P-GSE49175-50 ArrayExpress GSM1194725 LE 2 Cy5 P-GSE49175-51 ArrayExpress GSM1194725 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194725_sample_table.txt norm GSM1194725_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 GSM1194725 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10365 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194725 extract 1 total RNA P-GSE49175-39 ArrayExpress GSM1194725 LE 1 Cy3 P-GSE49175-51 ArrayExpress GSM1194725 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194725_sample_table.txt norm GSM1194725_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194724 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10362 >=median (36.52cm2) <25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile2;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194724 extract 2 total RNA P-GSE49175-48 ArrayExpress GSM1194724 LE 2 Cy5 P-GSE49175-49 ArrayExpress GSM1194724 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194724_sample_table.txt norm GSM1194724_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) <25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile2;Adipose proportion_tertile2 GSM1194724 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10362 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194724 extract 1 total RNA P-GSE49175-47 ArrayExpress GSM1194724 LE 1 Cy3 P-GSE49175-49 ArrayExpress GSM1194724 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194724_sample_table.txt norm GSM1194724_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194723 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10352 =median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194722 extract 2 total RNA P-GSE49175-43 ArrayExpress GSM1194722 LE 2 Cy5 P-GSE49175-44 ArrayExpress GSM1194722 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194722_sample_table.txt norm GSM1194722_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 GSM1194721 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10349 =25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194721 extract 2 total RNA P-GSE49175-41 ArrayExpress GSM1194721 LE 2 Cy5 P-GSE49175-42 ArrayExpress GSM1194721 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194721_sample_table.txt norm GSM1194721_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip =25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 GSM1194721 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10349 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194721 extract 1 total RNA P-GSE49175-31 ArrayExpress GSM1194721 LE 1 Cy3 P-GSE49175-42 ArrayExpress GSM1194721 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194721_sample_table.txt norm GSM1194721_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194720 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10340 >=median (36.52cm2) >=25% Active;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194720 extract 2 total RNA P-GSE49175-39 ArrayExpress GSM1194720 LE 2 Cy5 P-GSE49175-40 ArrayExpress GSM1194720 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194720_sample_table.txt norm GSM1194720_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active;Stromal proportion_tertile3;Epithelial proportion_tertile1;Adipose proportion_tertile1 GSM1194720 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10340 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194720 extract 1 total RNA P-GSE49175-28 ArrayExpress GSM1194720 LE 1 Cy3 P-GSE49175-40 ArrayExpress GSM1194720 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194720_sample_table.txt norm GSM1194720_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194719 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10331 >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194719 extract 2 total RNA P-GSE49175-37 ArrayExpress GSM1194719 LE 2 Cy5 P-GSE49175-38 ArrayExpress GSM1194719 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194719_sample_table.txt norm GSM1194719_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile1 GSM1194719 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10331 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194719 extract 1 total RNA P-GSE49175-36 ArrayExpress GSM1194719 LE 1 Cy3 P-GSE49175-38 ArrayExpress GSM1194719 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194719_sample_table.txt norm GSM1194719_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194718 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10329 =median (36.52cm2) >=25% Inactive Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194717 extract 2 total RNA P-GSE49175-31 ArrayExpress GSM1194717 LE 2 Cy5 P-GSE49175-32 ArrayExpress GSM1194717 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194717_sample_table.txt norm GSM1194717_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive GSM1194717 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10327 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194717 extract 1 total RNA P-GSE49175-30 ArrayExpress GSM1194717 LE 1 Cy3 P-GSE49175-32 ArrayExpress GSM1194717 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194717_sample_table.txt norm GSM1194717_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194716 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10320 >=median (36.52cm2) <25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile1;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194716 extract 2 total RNA P-GSE49175-28 ArrayExpress GSM1194716 LE 2 Cy5 P-GSE49175-29 ArrayExpress GSM1194716 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194716_sample_table.txt norm GSM1194716_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) <25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile1;Adipose proportion_tertile3 GSM1194716 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10320 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194716 extract 1 total RNA P-GSE49175-27 ArrayExpress GSM1194716 LE 1 Cy3 P-GSE49175-29 ArrayExpress GSM1194716 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194716_sample_table.txt norm GSM1194716_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194715 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10319 >=median (36.52cm2) <25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile3;Adipose proportion_tertile3 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194715 extract 2 total RNA P-GSE49175-25 ArrayExpress GSM1194715 LE 2 Cy5 P-GSE49175-26 ArrayExpress GSM1194715 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194715_sample_table.txt norm GSM1194715_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) <25% Active;Stromal proportion_tertile1;Epithelial proportion_tertile3;Adipose proportion_tertile3 GSM1194715 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10319 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194715 extract 1 total RNA P-GSE49175-24 ArrayExpress GSM1194715 LE 1 Cy3 P-GSE49175-26 ArrayExpress GSM1194715 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194715_sample_table.txt norm GSM1194715_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194599 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10043 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194599 extract 1 total RNA P-GSE49175-21 ArrayExpress GSM1194599 LE 1 Cy3 P-GSE49175-23 ArrayExpress GSM1194599 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194599_sample_table.txt norm GSM1194599_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194599 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10043 >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile3;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194599 extract 2 total RNA P-GSE49175-22 ArrayExpress GSM1194599 LE 2 Cy5 P-GSE49175-23 ArrayExpress GSM1194599 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194599_sample_table.txt norm GSM1194599_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile2;Epithelial proportion_tertile3;Adipose proportion_tertile2 GSM1194598 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10041 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194598 extract 1 total RNA P-GSE49175-10 ArrayExpress GSM1194598 LE 1 Cy3 P-GSE49175-20 ArrayExpress GSM1194598 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194598_sample_table.txt norm GSM1194598_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194598 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10041 >=median (36.52cm2) >=25% Active;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194598 extract 2 total RNA P-GSE49175-19 ArrayExpress GSM1194598 LE 2 Cy5 P-GSE49175-20 ArrayExpress GSM1194598 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194598_sample_table.txt norm GSM1194598_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active;Stromal proportion_tertile3;Epithelial proportion_tertile2;Adipose proportion_tertile2 GSM1194597 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10038 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194597 extract 1 total RNA P-GSE49175-8 ArrayExpress GSM1194597 LE 1 Cy3 P-GSE49175-18 ArrayExpress GSM1194597 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194597_sample_table.txt norm GSM1194597_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194597 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10038 >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile3;Adipose proportion_tertile1 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194597 extract 2 total RNA P-GSE49175-17 ArrayExpress GSM1194597 LE 2 Cy5 P-GSE49175-18 ArrayExpress GSM1194597 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194597_sample_table.txt norm GSM1194597_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Inactive;Stromal proportion_tertile3;Epithelial proportion_tertile3;Adipose proportion_tertile1 GSM1194596 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10028 >=median (36.52cm2) >=25% Active;Stromal proportion_tertile2;Epithelial proportion_tertile2;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194596 extract 2 total RNA P-GSE49175-15 ArrayExpress GSM1194596 LE 2 Cy5 P-GSE49175-16 ArrayExpress GSM1194596 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194596_sample_table.txt norm GSM1194596_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active;Stromal proportion_tertile2;Epithelial proportion_tertile2;Adipose proportion_tertile2 GSM1194596 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10028 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194596 extract 1 total RNA P-GSE49175-14 ArrayExpress GSM1194596 LE 1 Cy3 P-GSE49175-16 ArrayExpress GSM1194596 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194596_sample_table.txt norm GSM1194596_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194595 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10025 >=median (36.52cm2) <25% Active Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194595 extract 2 total RNA P-GSE49175-12 ArrayExpress GSM1194595 LE 2 Cy5 P-GSE49175-13 ArrayExpress GSM1194595 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194595_sample_table.txt norm GSM1194595_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) <25% Active GSM1194595 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10025 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194595 extract 1 total RNA P-GSE49175-6 ArrayExpress GSM1194595 LE 1 Cy3 P-GSE49175-13 ArrayExpress GSM1194595 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194595_sample_table.txt norm GSM1194595_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194594 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10019 >=median (36.52cm2) >=25% Active;Stromal proportion_tertile2;Epithelial proportion_tertile3;Adipose proportion_tertile2 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE49175-2 ArrayExpress GSM1194594 extract 2 total RNA P-GSE49175-10 ArrayExpress GSM1194594 LE 2 Cy5 P-GSE49175-11 ArrayExpress GSM1194594 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194594_sample_table.txt norm GSM1194594_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip >=median (36.52cm2) >=25% Active;Stromal proportion_tertile2;Epithelial proportion_tertile3;Adipose proportion_tertile2 GSM1194594 1 Normal Tissue Adjacent to Breast Tumor Human Reference B NCI10019 Stratagene Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs P-GSE49175-2 ArrayExpress GSM1194594 extract 1 total RNA P-GSE49175-3 ArrayExpress GSM1194594 LE 1 Cy3 P-GSE49175-11 ArrayExpress GSM1194594 A-AGIL-28 ArrayExpress array assay P-GSE49175-5 ArrayExpress P-GSE49175-1 ArrayExpress GSM1194594_sample_table.txt norm GSM1194594_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49175/E-GEOD-49175.processed.1.zip not specified not specified not specified GSM1194593 2 Normal Tissue Adjacent to Breast Tumor Normal Tissue Adjacent to Breast Tumor NCI10015