Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [age]	Unit[time unit]	Characteristics [strain]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [treatment]
GSM1194128 1	Sample name: 027A_11H1_aff096_504DT gene expression mouse middle ear control	Mouse middle ear control	ME control rep 8	2.1	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194128 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194128 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194128	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194128_027A_11H1_aff096_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194128_sample_table.txt norm	GSM1194128_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	control
GSM1194124 1	Sample name: 023A_11H1_aff107_504DT gene expression mouse middle ear control	Mouse middle ear control	ME control rep 7	2.1	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194124 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194124 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194124	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194124_023A_11H1_aff107_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194124_sample_table.txt norm	GSM1194124_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	control
GSM1194123 1	Sample name: 022A_11H1_aff103_504DT gene expression mouse middle ear control	Mouse middle ear control	ME control rep 6	2.1	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194123 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194123 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194123	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194123_022A_11H1_aff103_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194123_sample_table.txt norm	GSM1194123_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	control
GSM1194122 1	Sample name: 021A_11H1_aff095_504DT gene expression mouse middle ear control	Mouse middle ear control	ME control rep 5	2.1	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194122 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194122 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194122	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194122_021A_11H1_aff095_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194122_sample_table.txt norm	GSM1194122_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	control
GSM1194120 1	Sample name: 019A_11H1_aff102_504DT gene expression mouse middle ear control	Mouse middle ear control	ME control rep 4	2.1	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194120 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194120 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194120	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194120_019A_11H1_aff102_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194120_sample_table.txt norm	GSM1194120_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	control
GSM1194119 1	Sample name: 018A_11H1_aff105_504DT gene expression mouse middle ear control	Mouse middle ear control	ME control rep 3	2.1	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194119 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194119 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194119	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194119_018A_11H1_aff105_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194119_sample_table.txt norm	GSM1194119_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	control
GSM1194117 1	Sample name: 016A_11H1_aff094_504DT gene expression mouse middle ear control	Mouse middle ear control	ME control rep 2	2.1	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194117 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194117 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194117	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194117_016A_11H1_aff094_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194117_sample_table.txt norm	GSM1194117_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	control
GSM1194116 1	Sample name: 015A_11H1_aff104_504DT gene expression mouse middle ear control	Mouse middle ear control	ME control rep 1	2.1	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194116 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194116 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194116	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194116_015A_11H1_aff104_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194116_sample_table.txt norm	GSM1194116_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	control
GSM1194132 1	Sample name: 031A_11H1_aff100_504DT gene expression mouse middle ear infected	Mouse middle ear 6 hrs after TT inj with H flu	ME TT Hflu rep 9	2.1	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194132 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194132 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194132	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194132_031A_11H1_aff100_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194132_sample_table.txt norm	GSM1194132_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	trans-tympanically injected with Hemophilus influenza
GSM1194131 1	Sample name: 030A_11H1_aff108_504DT gene expression mouse middle ear infected	Mouse middle ear 6 hrs after TT inj with H flu	ME TT Hflu rep 8	2.4	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194131 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194131 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194131	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194131_030A_11H1_aff108_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194131_sample_table.txt norm	GSM1194131_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	trans-tympanically injected with Hemophilus influenza
GSM1194130 1	Sample name: 029A_11H1_aff111_504DT gene expression mouse middle ear infected	Mouse middle ear 6 hrs after TT inj with H flu	ME TT Hflu rep 7	2.4	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194130 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194130 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194130	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194130_029A_11H1_aff111_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194130_sample_table.txt norm	GSM1194130_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	trans-tympanically injected with Hemophilus influenza
GSM1194129 1	Sample name: 028A_11H1_aff097_504DT gene expression mouse middle ear infected	Mouse middle ear 6 hrs after TT inj with H flu	ME TT Hflu rep 6	2.1	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194129 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194129 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194129	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194129_028A_11H1_aff097_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194129_sample_table.txt norm	GSM1194129_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	trans-tympanically injected with Hemophilus influenza
GSM1194127 1	Sample name: 026A_11H1_aff110_504DT gene expression mouse middle ear infected	Mouse middle ear 6 hrs after TT inj with H flu	ME TT Hflu rep 5	2.4	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194127 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194127 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194127	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194127_026A_11H1_aff110_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194127_sample_table.txt norm	GSM1194127_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	trans-tympanically injected with Hemophilus influenza
GSM1194126 1	Sample name: 025A_11H1_aff106_504DT gene expression mouse middle ear infected	Mouse middle ear 6 hrs after TT inj with H flu	ME TT Hflu rep 4	2.1	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194126 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194126 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194126	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194126_025A_11H1_aff106_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194126_sample_table.txt norm	GSM1194126_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	trans-tympanically injected with Hemophilus influenza
GSM1194125 1	Sample name: 024A_11H1_aff109_504DT gene expression mouse middle ear infected	Mouse middle ear 6 hrs after TT inj with H flu	ME TT Hflu rep 3	2.4	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194125 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194125 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194125	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194125_024A_11H1_aff109_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194125_sample_table.txt norm	GSM1194125_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	trans-tympanically injected with Hemophilus influenza
GSM1194121 1	Sample name: 020A_11H1_aff101_504DT gene expression mouse middle ear infected	Mouse middle ear 6 hrs after TT inj with H flu	ME TT Hflu rep 2	2.1	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194121 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194121 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194121	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194121_020A_11H1_aff101_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194121_sample_table.txt norm	GSM1194121_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	trans-tympanically injected with Hemophilus influenza
GSM1194118 1	Sample name: 017A_11H1_aff098_504DT gene expression mouse middle ear infected	Mouse middle ear 6 hrs after TT inj with H flu	ME TT Hflu rep 1	2.1	month	Balb/cJ	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	middle ear	P-GSE49128-2	ArrayExpress	P-GSE49128-3	ArrayExpress	P-GSE49128-4	ArrayExpress	GSM1194118 extract 1	total RNA	P-GSE49128-5	ArrayExpress	GSM1194118 LE 1	biotin	P-GSE49128-6	ArrayExpress	GSM1194118	A-AFFY-45	ArrayExpress	array assay	P-GSE49128-7	ArrayExpress	GSM1194118_017A_11H1_aff098_504DT.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.raw.1.zip	P-GSE49128-1	ArrayExpress	GSM1194118_sample_table.txt norm	GSM1194118_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-49128/E-GEOD-49128.processed.1.zip	trans-tympanically injected with Hemophilus influenza