Source Name	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Characteristics [strain background]	Term Source REF	Term Accession Number	Characteristics [treated with]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [GENOTYPE]	FactorValue [TREATED WITH]
GSM1186333 1	mammary gland_Ccnd1-/-_E2	Mouse mammary gland Ccnd1-/- E2 Rep3	Ccnd1-/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mouse mammary gland	C57BL/6	EFO	EFO_0004472	estradiol releasing pellets	P-GSE48884-2	ArrayExpress	P-GSE48884-3	ArrayExpress	P-GSE48884-4	ArrayExpress	GSM1186333 extract 1	total RNA	P-GSE48884-5	ArrayExpress	GSM1186333 LE 1	Biotin	P-GSE48884-6	ArrayExpress	GSM1186333	A-AFFY-45	ArrayExpress	array assay	P-GSE48884-7	ArrayExpress	GSM1186333_53KOE.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.raw.1.zip	P-GSE48884-1	ArrayExpress	GSM1186333_sample_table.txt norm	GSM1186333_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.processed.1.zip	Ccnd1-/-	estradiol releasing pellets
GSM1186332 1	mammary gland_Ccnd1-/-_E2	Mouse mammary gland Ccnd1-/- E2 Rep2	Ccnd1-/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mouse mammary gland	C57BL/6	EFO	EFO_0004472	estradiol releasing pellets	P-GSE48884-2	ArrayExpress	P-GSE48884-3	ArrayExpress	P-GSE48884-4	ArrayExpress	GSM1186332 extract 1	total RNA	P-GSE48884-5	ArrayExpress	GSM1186332 LE 1	Biotin	P-GSE48884-6	ArrayExpress	GSM1186332	A-AFFY-45	ArrayExpress	array assay	P-GSE48884-7	ArrayExpress	GSM1186332_21KOE.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.raw.1.zip	P-GSE48884-1	ArrayExpress	GSM1186332_sample_table.txt norm	GSM1186332_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.processed.1.zip	Ccnd1-/-	estradiol releasing pellets
GSM1186331 1	mammary gland_Ccnd1-/-_E2	Mouse mammary gland Ccnd1-/- E2 Rep1	Ccnd1-/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mouse mammary gland	C57BL/6	EFO	EFO_0004472	estradiol releasing pellets	P-GSE48884-2	ArrayExpress	P-GSE48884-3	ArrayExpress	P-GSE48884-4	ArrayExpress	GSM1186331 extract 1	total RNA	P-GSE48884-5	ArrayExpress	GSM1186331 LE 1	Biotin	P-GSE48884-6	ArrayExpress	GSM1186331	A-AFFY-45	ArrayExpress	array assay	P-GSE48884-7	ArrayExpress	GSM1186331_20KOE.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.raw.1.zip	P-GSE48884-1	ArrayExpress	GSM1186331_sample_table.txt norm	GSM1186331_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.processed.1.zip	Ccnd1-/-	estradiol releasing pellets
GSM1186330 1	mammary gland_Ccnd1-/-_Vehicle	Mouse mammary gland Ccnd1-/- Vehicle Rep3	Ccnd1-/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mouse mammary gland	C57BL/6	EFO	EFO_0004472	placebo control	P-GSE48884-2	ArrayExpress	P-GSE48884-3	ArrayExpress	P-GSE48884-4	ArrayExpress	GSM1186330 extract 1	total RNA	P-GSE48884-5	ArrayExpress	GSM1186330 LE 1	Biotin	P-GSE48884-6	ArrayExpress	GSM1186330	A-AFFY-45	ArrayExpress	array assay	P-GSE48884-7	ArrayExpress	GSM1186330_322KOP.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.raw.1.zip	P-GSE48884-1	ArrayExpress	GSM1186330_sample_table.txt norm	GSM1186330_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.processed.1.zip	Ccnd1-/-	placebo control
GSM1186329 1	mammary gland_Ccnd1-/-_Vehicle	Mouse mammary gland Ccnd1-/- Vehicle Rep2	Ccnd1-/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mouse mammary gland	C57BL/6	EFO	EFO_0004472	placebo control	P-GSE48884-2	ArrayExpress	P-GSE48884-3	ArrayExpress	P-GSE48884-4	ArrayExpress	GSM1186329 extract 1	total RNA	P-GSE48884-5	ArrayExpress	GSM1186329 LE 1	Biotin	P-GSE48884-6	ArrayExpress	GSM1186329	A-AFFY-45	ArrayExpress	array assay	P-GSE48884-7	ArrayExpress	GSM1186329_69KOP.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.raw.1.zip	P-GSE48884-1	ArrayExpress	GSM1186329_sample_table.txt norm	GSM1186329_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.processed.1.zip	Ccnd1-/-	placebo control
GSM1186328 1	mammary gland_Ccnd1-/-_Vehicle	Mouse mammary gland Ccnd1-/- Vehicle Rep1	Ccnd1-/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mouse mammary gland	C57BL/6	EFO	EFO_0004472	placebo control	P-GSE48884-2	ArrayExpress	P-GSE48884-3	ArrayExpress	P-GSE48884-4	ArrayExpress	GSM1186328 extract 1	total RNA	P-GSE48884-5	ArrayExpress	GSM1186328 LE 1	Biotin	P-GSE48884-6	ArrayExpress	GSM1186328	A-AFFY-45	ArrayExpress	array assay	P-GSE48884-7	ArrayExpress	GSM1186328_5KOP.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.raw.1.zip	P-GSE48884-1	ArrayExpress	GSM1186328_sample_table.txt norm	GSM1186328_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.processed.1.zip	Ccnd1-/-	placebo control
GSM1186327 1	mammary gland_Ccnd1+/+_E2	Mouse mammary gland Ccnd1+/+ E2 Rep3	Ccnd1+/+	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mouse mammary gland	C57BL/6	EFO	EFO_0004472	estradiol releasing pellets	P-GSE48884-2	ArrayExpress	P-GSE48884-3	ArrayExpress	P-GSE48884-4	ArrayExpress	GSM1186327 extract 1	total RNA	P-GSE48884-5	ArrayExpress	GSM1186327 LE 1	Biotin	P-GSE48884-6	ArrayExpress	GSM1186327	A-AFFY-45	ArrayExpress	array assay	P-GSE48884-7	ArrayExpress	GSM1186327_336WTE.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.raw.1.zip	P-GSE48884-1	ArrayExpress	GSM1186327_sample_table.txt norm	GSM1186327_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.processed.1.zip	Ccnd1+/+	estradiol releasing pellets
GSM1186326 1	mammary gland_Ccnd1+/+_E2	Mouse mammary gland Ccnd1+/+ E2 Rep2	Ccnd1+/+	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mouse mammary gland	C57BL/6	EFO	EFO_0004472	estradiol releasing pellets	P-GSE48884-2	ArrayExpress	P-GSE48884-3	ArrayExpress	P-GSE48884-4	ArrayExpress	GSM1186326 extract 1	total RNA	P-GSE48884-5	ArrayExpress	GSM1186326 LE 1	Biotin	P-GSE48884-6	ArrayExpress	GSM1186326	A-AFFY-45	ArrayExpress	array assay	P-GSE48884-7	ArrayExpress	GSM1186326_57WTE.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.raw.1.zip	P-GSE48884-1	ArrayExpress	GSM1186326_sample_table.txt norm	GSM1186326_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.processed.1.zip	Ccnd1+/+	estradiol releasing pellets
GSM1186325 1	mammary gland_Ccnd1+/+_E2	Mouse mammary gland Ccnd1+/+ E2 Rep1	Ccnd1+/+	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mouse mammary gland	C57BL/6	EFO	EFO_0004472	estradiol releasing pellets	P-GSE48884-2	ArrayExpress	P-GSE48884-3	ArrayExpress	P-GSE48884-4	ArrayExpress	GSM1186325 extract 1	total RNA	P-GSE48884-5	ArrayExpress	GSM1186325 LE 1	Biotin	P-GSE48884-6	ArrayExpress	GSM1186325	A-AFFY-45	ArrayExpress	array assay	P-GSE48884-7	ArrayExpress	GSM1186325_99WTE.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.raw.1.zip	P-GSE48884-1	ArrayExpress	GSM1186325_sample_table.txt norm	GSM1186325_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.processed.1.zip	Ccnd1+/+	estradiol releasing pellets
GSM1186324 1	mammary gland_Ccnd1+/+_Vehicle	Mouse mammary gland Ccnd1+/+ Vehicle Rep3	Ccnd1+/+	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mouse mammary gland	C57BL/6	EFO	EFO_0004472	placebo control	P-GSE48884-2	ArrayExpress	P-GSE48884-3	ArrayExpress	P-GSE48884-4	ArrayExpress	GSM1186324 extract 1	total RNA	P-GSE48884-5	ArrayExpress	GSM1186324 LE 1	Biotin	P-GSE48884-6	ArrayExpress	GSM1186324	A-AFFY-45	ArrayExpress	array assay	P-GSE48884-7	ArrayExpress	GSM1186324_54WTP.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.raw.1.zip	P-GSE48884-1	ArrayExpress	GSM1186324_sample_table.txt norm	GSM1186324_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.processed.1.zip	Ccnd1+/+	placebo control
GSM1186323 1	mammary gland_Ccnd1+/+_Vehicle	Mouse mammary gland Ccnd1+/+ Vehicle Rep2	Ccnd1+/+	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mouse mammary gland	C57BL/6	EFO	EFO_0004472	placebo control	P-GSE48884-2	ArrayExpress	P-GSE48884-3	ArrayExpress	P-GSE48884-4	ArrayExpress	GSM1186323 extract 1	total RNA	P-GSE48884-5	ArrayExpress	GSM1186323 LE 1	Biotin	P-GSE48884-6	ArrayExpress	GSM1186323	A-AFFY-45	ArrayExpress	array assay	P-GSE48884-7	ArrayExpress	GSM1186323_334WTP.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.raw.1.zip	P-GSE48884-1	ArrayExpress	GSM1186323_sample_table.txt norm	GSM1186323_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.processed.1.zip	Ccnd1+/+	placebo control
GSM1186322 1	mammary gland_Ccnd1+/+_Vehicle	Mouse mammary gland Ccnd1+/+ Vehicle Rep1	Ccnd1+/+	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mouse mammary gland	C57BL/6	EFO	EFO_0004472	placebo control	P-GSE48884-2	ArrayExpress	P-GSE48884-3	ArrayExpress	P-GSE48884-4	ArrayExpress	GSM1186322 extract 1	total RNA	P-GSE48884-5	ArrayExpress	GSM1186322 LE 1	Biotin	P-GSE48884-6	ArrayExpress	GSM1186322	A-AFFY-45	ArrayExpress	array assay	P-GSE48884-7	ArrayExpress	GSM1186322_333WTP.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.raw.1.zip	P-GSE48884-1	ArrayExpress	GSM1186322_sample_table.txt norm	GSM1186322_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48884/E-GEOD-48884.processed.1.zip	Ccnd1+/+	placebo control