Source Name	Comment [ENA_SAMPLE]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [bromouridine labeling start]	Characteristics [bromouridine labeling time]	Characteristics [camptothecin exposure time]	Characteristics [cell type]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [stranded]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Scan Name	Comment [ENA_RUN]	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [BROMOURIDINE LABELING START]	FactorValue [BROMOURIDINE LABELING TIME]	FactorValue [CAMPTOTHECIN EXPOSURE TIME]	FactorValue [CELL TYPE]	FactorValue [TREATMENT]	Term Source REF	Term Accession Number
GSM1183342 1	SRS456244	Cockayne syndrome group B fibroblasts	csbCPT30m1	15 minutes after washout	15 minutes	60 minutes	Cockayne syndrome group B fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183342 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183342	SRX319703	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929985	SRR929985	GSM1183342_csbCPT30m1_genes.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48678/E-GEOD-48678.processed.1.zip	15 minutes after washout	15 minutes	60 minutes	Cockayne syndrome group B fibroblasts	CPT exposure	  	        
GSM1183341 1	SRS456243	Cockayne syndrome group B fibroblasts	csbCPT15m1	Immediately after washout	15 minutes	60 minutes	Cockayne syndrome group B fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183341 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183341	SRX319702	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929984	SRR929984	GSM1183341_csbCPT15m1_genes.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48678/E-GEOD-48678.processed.1.zip	Immediately after washout	15 minutes	60 minutes	Cockayne syndrome group B fibroblasts	CPT exposure	  	        
GSM1183340 1	SRS456242	Cockayne syndrome group B fibroblasts	csbCPT0m1	15 minutes prior to washout	15 minutes	60 minutes	Cockayne syndrome group B fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183340 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183340	SRX319701	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929983	SRR929983	GSM1183340_csbCPT0m1_genes.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48678/E-GEOD-48678.processed.1.zip	15 minutes prior to washout	15 minutes	60 minutes	Cockayne syndrome group B fibroblasts	CPT exposure	  	        
GSM1183339 1	SRS456241	Cockayne syndrome group B fibroblasts	csb0h1	NA	30 minutes	0 minutes	Cockayne syndrome group B fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183339 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183339	SRX319700	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929981	SRR929981	GSM1183339_csb0h1_genes.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48678/E-GEOD-48678.processed.1.zip	NA	30 minutes	0 minutes	Cockayne syndrome group B fibroblasts	control	EFO	EFO_0001461
GSM1183338 1	SRS456240	Foreskin fibroblasts	nfCPT30m1	15 minutes after washout	15 minutes	60 minutes	Foreskin fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183338 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183338	SRX319699	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929980	SRR929980	GSM1183338_nfCPT30m1_genes.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48678/E-GEOD-48678.processed.1.zip	15 minutes after washout	15 minutes	60 minutes	Foreskin fibroblasts	CPT exposure	  	        
GSM1183337 1	SRS456239	Foreskin fibroblasts	nfCPT15m1	Immediately after washout	15 minutes	60 minutes	Foreskin fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183337 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183337	SRX319698	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929979	SRR929979	GSM1183337_nfCPT15m1_genes.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48678/E-GEOD-48678.processed.1.zip	Immediately after washout	15 minutes	60 minutes	Foreskin fibroblasts	CPT exposure	  	        
GSM1183336 1	SRS456238	Foreskin fibroblasts	nfCPT0m1	15 minutes prior to washout	15 minutes	60 minutes	Foreskin fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183336 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183336	SRX319697	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929978	SRR929978	GSM1183336_nfCPT0m1_genes.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48678/E-GEOD-48678.processed.1.zip	15 minutes prior to washout	15 minutes	60 minutes	Foreskin fibroblasts	CPT exposure	  	        
GSM1183335 1	SRS456237	Foreskin fibroblasts	nf0h3b	NA	30 minutes	0 minutes	Foreskin fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183335 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183335	SRX319696	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929974	SRR929974	GSM1183335_nf0h3b_genes.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48678/E-GEOD-48678.processed.1.zip	NA	30 minutes	0 minutes	Foreskin fibroblasts	control	EFO	EFO_0001461
GSM1183334 1	SRS472341	Foreskin fibroblasts	nf0h3a	NA	30 minutes	0 minutes	Foreskin fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183334 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183334	SRX319695	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929970	SRR929970	GSM1183334_nf0h3a_genes.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-48678/E-GEOD-48678.processed.1.zip	NA	30 minutes	0 minutes	Foreskin fibroblasts	control	EFO	EFO_0001461
GSM1183339 1	SRS456241	Cockayne syndrome group B fibroblasts	csb0h1	NA	30 minutes	0 minutes	Cockayne syndrome group B fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183339 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183339	SRX319700	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929982	SRR929982	  	  	NA	30 minutes	0 minutes	Cockayne syndrome group B fibroblasts	control	EFO	EFO_0001461
GSM1183335 1	SRS456237	Foreskin fibroblasts	nf0h3b	NA	30 minutes	0 minutes	Foreskin fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183335 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183335	SRX319696	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929977	SRR929977	  	  	NA	30 minutes	0 minutes	Foreskin fibroblasts	control	EFO	EFO_0001461
GSM1183335 1	SRS456237	Foreskin fibroblasts	nf0h3b	NA	30 minutes	0 minutes	Foreskin fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183335 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183335	SRX319696	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929976	SRR929976	  	  	NA	30 minutes	0 minutes	Foreskin fibroblasts	control	EFO	EFO_0001461
GSM1183335 1	SRS456237	Foreskin fibroblasts	nf0h3b	NA	30 minutes	0 minutes	Foreskin fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183335 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183335	SRX319696	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929975	SRR929975	  	  	NA	30 minutes	0 minutes	Foreskin fibroblasts	control	EFO	EFO_0001461
GSM1183334 1	SRS472341	Foreskin fibroblasts	nf0h3a	NA	30 minutes	0 minutes	Foreskin fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183334 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183334	SRX319695	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929973	SRR929973	  	  	NA	30 minutes	0 minutes	Foreskin fibroblasts	control	EFO	EFO_0001461
GSM1183334 1	SRS472341	Foreskin fibroblasts	nf0h3a	NA	30 minutes	0 minutes	Foreskin fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183334 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183334	SRX319695	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929972	SRR929972	  	  	NA	30 minutes	0 minutes	Foreskin fibroblasts	control	EFO	EFO_0001461
GSM1183334 1	SRS472341	Foreskin fibroblasts	nf0h3a	NA	30 minutes	0 minutes	Foreskin fibroblasts	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	TRUE	P-GSE48678-1	ArrayExpress	P-GSE48678-2	ArrayExpress	P-GSE48678-3	ArrayExpress	GSM1183334 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1183334	SRX319695	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE48678-4	ArrayExpress	SRR929971	SRR929971	  	  	NA	30 minutes	0 minutes	Foreskin fibroblasts	control	EFO	EFO_0001461