Comment[ArrayExpressAccession]	E-GEOD-47642
MAGE-TAB Version	1.1				
Public Release Date	2013-12-01
Investigation Title	Kindler syndrome microarray study				
Comment[Submitted Name]	Kindler syndrome microarray study
Experiment Description	Characterization of gene expression profile of normal human and Kindler Syndrome (KS) patients skin biopsies samples, to extend the knowledge of transcriptional changes in the Kindler syndrome disease. For this micro array three age-, site - and sex-matched biopsies form control and Kindler Syndrome patients were analyzed.				
Term Source Name	ArrayExpress	EFO
Term Source File	http://www.ebi.ac.uk/arrayexpress/	http://www.ebi.ac.uk/efo/efo.owl			
Person Last Name	Mein	Lai-Cheong	McGrath	Mein	Nuamah
Person First Name	Charles	Joey	John	Charles	Rosamond
Person Mid Initials		E		A	A
Person Email	c.a.mein@qmul.ac.uk				
Person Affiliation	Queen Mary University				
Person Address	Genome Centre, Queen Mary University, Charterhouse Square, London, United Kingdom				
Person Roles	submitter				
Protocol Name	P-GSE47642-1	P-GSE47642-3	P-GSE47642-4	P-GSE47642-2	P-GSE47642-5
Protocol Description	Genome Studio, Data normalised with Quantile Normalisation ID_REF =  VALUE = quantile normalized Avg_NBEADS =  BEAD_STDERR =  Detection Pval = 	Ambion Total Prep 96	Standard Illumina	Total RNA was extracted using the RNeasy Fibrous Tissue Mini kit (Qiagen) and quantity and quality were measured on a Nanodrop spectrophotometer (Nanodrop, Wilmington, DE, U.S.A.).	Standard Illumina
Protocol Type	normalization data transformation protocol	labelling protocol	hybridization protocol	nucleic acid extraction protocol	array scanning protocol
Experimental Factor Name	DISEASE STATE	ORIGIN	GENOTYPE	AGE	
Experimental Factor Type	disease state	origin	genotype	age	
Comment[SecondaryAccession]	GSE47642				
Comment[GEOReleaseDate]	2013-12-01				
Comment[ArrayExpressSubmissionDate]	2013-06-04				
Comment[GEOLastUpdateDate]	2013-12-01				
Comment[AEExperimentType]	transcription profiling by array				
Comment[AdditionalFile:Data1]	GSE47642_non-normalized.txt				
SDRF File	E-GEOD-47642.sdrf.txt