Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [age] Characteristics [cell type] Characteristics [genetic background] Characteristics [genotype] Characteristics [organism] Term Source REF Term Accession Number Characteristics [sex] Term Source REF Term Accession Number Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [GENOTYPE] FactorValue [SEX] Term Source REF Term Accession Number GSM1149231 1 Gene expression from CD4& CD8 double negative; CD44 negative; CD25 positive thymocytes SCID_Mouse #525_Thymocytes DN3 SCID_#525_Thymocytes DN3, biological rep4 6~8 weeks thymocytes outbred ICR HOX11 negative, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149231 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149231 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149231 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149231_MOE4302_040909H_MH6_525_DN3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149231_sample_table.txt norm GSM1149231_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 negative, B220 & CD3 negative female EFO EFO_0001265 GSM1149230 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 positive thymocytes SCID_Mouse #525_Thymocytes DN2 SCID_#525_Thymocytes DN2, biological rep4 6~8 weeks thymocytes outbred ICR HOX11 negative, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149230 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149230 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149230 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149230_MOE4302_040909H_MH5_525_DN2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149230_sample_table.txt norm GSM1149230_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 negative, B220 & CD3 negative female EFO EFO_0001265 GSM1149229 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 negative thymocytes SCID_Mouse #525_Thymocytes DN1 SCID_#525_Thymocytes DN1, biological rep4 6~8 weeks thymocytes outbred ICR HOX11 negative, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149229 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149229 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149229 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149229_MOE4302_040909H_MH4_525_DN1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149229_sample_table.txt norm GSM1149229_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 negative, B220 & CD3 negative female EFO EFO_0001265 GSM1149228 1 Gene expression from CD4& CD8 double negative; CD44 negative; CD25 positive thymocytes HOXSCID_Mouse #535_Thymocytes DN3 HOXSCID_#535_Thymocytes DN3, biological rep4 6~8 weeks thymocytes outbred ICR HOX11 positive, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149228 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149228 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149228 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149228_MOE4302_040909H_MH3_535_DN3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149228_sample_table.txt norm GSM1149228_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 positive, B220 & CD3 negative female EFO EFO_0001265 GSM1149227 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 positive thymocytes HOXSCID_Mouse #535_Thymocytes DN2 HOXSCID_#535_Thymocytes DN2, biological rep4 6~8 weeks thymocytes outbred ICR HOX11 positive, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149227 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149227 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149227 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149227_MOE4302_040909H_MH2_535_DN2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149227_sample_table.txt norm GSM1149227_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 positive, B220 & CD3 negative female EFO EFO_0001265 GSM1149226 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 negative thymocytes HOXSCID_Mouse #535_Thymocytes DN1 HOXSCID_#535_Thymocytes DN1, biological rep4 6~8 weeks thymocytes outbred ICR HOX11 positive, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149226 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149226 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149226 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149226_MOE4302_040909H_MH1_535_DN1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149226_sample_table.txt norm GSM1149226_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 positive, B220 & CD3 negative female EFO EFO_0001265 GSM1149225 1 Gene expression from CD4& CD8 double negative; CD44 negative; CD25 positive thymocytes HOXSCID_Mouse #999_Thymocytes DN3 HOXSCID_#999_Thymocytes DN3, biological rep3 6~8 weeks thymocytes outbred ICR HOX11 positive, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149225 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149225 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149225 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149225_MOE4302_092309H_MH9_999_DN3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149225_sample_table.txt norm GSM1149225_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 positive, B220 & CD3 negative male EFO EFO_0001266 GSM1149224 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 positive thymocytes HOXSCID_Mouse #999_Thymocytes DN2 HOXSCID_#999_Thymocytes DN2, biological rep3 6~8 weeks thymocytes outbred ICR HOX11 positive, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149224 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149224 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149224 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149224_MOE4302_092309H_MH8_999_DN2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149224_sample_table.txt norm GSM1149224_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 positive, B220 & CD3 negative male EFO EFO_0001266 GSM1149223 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 negative thymocytes HOXSCID_Mouse #999_Thymocytes DN1 HOXSCID_#999_Thymocytes DN1, biological rep3 6~8 weeks thymocytes outbred ICR HOX11 positive, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149223 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149223 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149223 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149223_MOE4302_092309H_MH7_999_DN1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149223_sample_table.txt norm GSM1149223_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 positive, B220 & CD3 negative male EFO EFO_0001266 GSM1149222 1 Gene expression from CD4& CD8 double negative; CD44 negative; CD25 positive thymocytes SCID_Mouse #686_Thymocytes DN3 SCID_#686_Thymocytes DN3, biological rep3 6~8 weeks thymocytes outbred ICR HOX11 negative, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149222 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149222 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149222 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149222_MOE4302_092309H_MH25_686_DN3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149222_sample_table.txt norm GSM1149222_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 negative, B220 & CD3 negative male EFO EFO_0001266 GSM1149221 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 positive thymocytes SCID_Mouse #686_Thymocytes DN2 SCID_#686_Thymocytes DN2, biological rep3 6~8 weeks thymocytes outbred ICR HOX11 negative, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149221 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149221 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149221 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149221_MOE4302_092309H_MH24_686_DN2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149221_sample_table.txt norm GSM1149221_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 negative, B220 & CD3 negative male EFO EFO_0001266 GSM1149220 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 negative thymocytes SCID_Mouse #686_Thymocytes DN1 SCID_#686_Thymocytes DN1, biological rep3 6~8 weeks thymocytes outbred ICR HOX11 negative, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149220 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149220 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149220 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149220_MOE4302_092309H_MH23_686_DN1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149220_sample_table.txt norm GSM1149220_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 negative, B220 & CD3 negative male EFO EFO_0001266 GSM1149219 1 Gene expression from CD4& CD8 double negative; CD44 negative; CD25 positive thymocytes HOXSCID_Mouse #20_Thymocytes DN3 HOXSCID_#20_Thymocytes DN3, biological rep2 6~8 weeks thymocytes outbred ICR HOX11 positive, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149219 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149219 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149219 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149219_MOE4302_092309H_MH21_20_DN3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149219_sample_table.txt norm GSM1149219_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 positive, B220 & CD3 negative male EFO EFO_0001266 GSM1149218 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 positive thymocytes HOXSCID_Mouse #20_Thymocytes DN2 HOXSCID_#20_Thymocytes DN2, biological rep2 6~8 weeks thymocytes outbred ICR HOX11 positive, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149218 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149218 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149218 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149218_MOE4302_092309H_MH20_20_DN2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149218_sample_table.txt norm GSM1149218_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 positive, B220 & CD3 negative male EFO EFO_0001266 GSM1149217 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 negative thymocytes HOXSCID_Mouse #20_Thymocytes DN1 HOXSCID_#20_Thymocytes DN1, biological rep2 6~8 weeks thymocytes outbred ICR HOX11 positive, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149217 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149217 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149217 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149217_MOE4302_092309H_MH19_20_DN1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149217_sample_table.txt norm GSM1149217_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 positive, B220 & CD3 negative male EFO EFO_0001266 GSM1149216 1 Gene expression from CD4& CD8 double negative; CD44 negative; CD25 positive thymocytes SCID_Mouse #50_Thymocytes DN3 SCID_#50_Thymocytes DN3, biological rep2 6~8 weeks thymocytes outbred ICR HOX11 negative, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149216 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149216 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149216 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149216_MOE4302_092309H_MH18_50_DN3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149216_sample_table.txt norm GSM1149216_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 negative, B220 & CD3 negative female EFO EFO_0001265 GSM1149215 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 positive thymocytes SCID_Mouse #50_Thymocytes DN2 SCID_#50_Thymocytes DN2, biological rep2 6~8 weeks thymocytes outbred ICR HOX11 negative, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149215 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149215 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149215 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149215_MOE4302_092309H_MH17_50_DN2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149215_sample_table.txt norm GSM1149215_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 negative, B220 & CD3 negative female EFO EFO_0001265 GSM1149214 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 negative thymocytes SCID_Mouse #50_Thymocytes DN1 SCID_#50_Thymocytes DN1, biological rep2 6~8 weeks thymocytes outbred ICR HOX11 negative, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149214 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149214 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149214 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149214_MOE4302_092309H_MH16_50_DN1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149214_sample_table.txt norm GSM1149214_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 negative, B220 & CD3 negative female EFO EFO_0001265 GSM1149213 1 Gene expression from CD4& CD8 double negative; CD44 negative; CD25 positive thymocytes SCID_Mouse #687_Thymocytes DN3 SCID_#687_Thymocytes DN3, biological rep1 6~8 weeks thymocytes outbred ICR HOX11 negative, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149213 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149213 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149213 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149213_MOE4302_092309H_MH15_687_DN3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149213_sample_table.txt norm GSM1149213_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 negative, B220 & CD3 negative male EFO EFO_0001266 GSM1149212 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 positive thymocytes SCID_Mouse #687_Thymocytes DN2 SCID_#687_Thymocytes DN2, biological rep1 6~8 weeks thymocytes outbred ICR HOX11 negative, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149212 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149212 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149212 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149212_MOE4302_092309H_MH14_687_DN2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149212_sample_table.txt norm GSM1149212_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 negative, B220 & CD3 negative male EFO EFO_0001266 GSM1149211 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 negative thymocytes SCID_#687_Mouse Thymocytes DN1 SCID_#687_Thymocytes DN1, biological rep1 6~8 weeks thymocytes outbred ICR HOX11 negative, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 male EFO EFO_0001266 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149211 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149211 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149211 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149211_MOE4302_092309H_MH13_687_DN1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149211_sample_table.txt norm GSM1149211_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 negative, B220 & CD3 negative male EFO EFO_0001266 GSM1149210 1 Gene expression from CD4& CD8 double negative; CD44 negative; CD25 positive thymocytes HOXSCID_Mouse #19_Thymocytes DN3 HOXSCID_#19_Thymocytes DN3, biological rep1 6~8 weeks thymocytes outbred ICR HOX11 positive, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149210 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149210 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149210 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149210_MOE4302_092309H_MH12_19_DN3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149210_sample_table.txt norm GSM1149210_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 positive, B220 & CD3 negative female EFO EFO_0001265 GSM1149209 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 positive thymocytes HOXSCID_Mouse #19_Thymocytes DN2 HOXSCID_#19_Thymocytes DN2, biological rep1 6~8 weeks thymocytes outbred ICR HOX11 positive, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149209 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149209 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149209 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149209_MOE4302_092309H_MH11_19_DN2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149209_sample_table.txt norm GSM1149209_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 positive, B220 & CD3 negative female EFO EFO_0001265 GSM1149208 1 Gene expression from CD4& CD8 double negative; CD44 positive; CD25 negative thymocytes HOXSCID_Mouse #19_Thymocytes DN1 HOXSCID_#19_Thymocytes DN1, biological rep1 6~8 weeks thymocytes outbred ICR HOX11 positive, B220 & CD3 negative Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 female EFO EFO_0001265 P-GSE47421-2 ArrayExpress P-GSE47421-3 ArrayExpress P-GSE47421-4 ArrayExpress GSM1149208 extract 1 total RNA P-GSE47421-5 ArrayExpress GSM1149208 LE 1 biotin P-GSE47421-6 ArrayExpress GSM1149208 A-AFFY-45 ArrayExpress array assay P-GSE47421-7 ArrayExpress GSM1149208_MOE4302_092309H_MH10_19_DN1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.raw.1.zip P-GSE47421-1 ArrayExpress GSM1149208_sample_table.txt norm GSM1149208_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-47421/E-GEOD-47421.processed.1.zip HOX11 positive, B220 & CD3 negative female EFO EFO_0001265