Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell line]	Term Source REF	Term Accession Number	Characteristics [cell type]	Term Source REF	Term Accession Number	Characteristics [genotype]	Term Source REF	Term Accession Number	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [compound]	Term Source REF	Term Accession Number	FactorValue [genotype]	Term Source REF	Term Accession Number
GSM1103984 1	Dox_PMA_3 Gene expression data from cell line differentiated with PMA in the presence of doxycycline-inducible knockdown of ZXDC1/2	U937-derived cell line harboring TRIPZ-shRNAmir TetOn cassette (clone ID: V3THS-381738)	PMA treated, doxycycline treated; biological replicate 3	U937	EFO	EFO_0001257	Histiocytic Lymphoma	EFO	EFO_0001642	ZXDC1 knockdown	  	  	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE45417-2	ArrayExpress	P-GSE45417-3	ArrayExpress	P-GSE45417-4	ArrayExpress	GSM1103984 extract 1	total RNA	P-GSE45417-5	ArrayExpress	GSM1103984 LE 1	biotin	P-GSE45417-6	ArrayExpress	GSM1103984	A-AFFY-44	ArrayExpress	array assay	P-GSE45417-7	ArrayExpress	GSM1103984_DOX_PMA3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.raw.1.zip	P-GSE45417-1	ArrayExpress	GSM1103984_sample_table.txt norm	GSM1103984_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.processed.1.zip	PMA	EFO	http://purl.obolibrary.org/obo/CHEBI_37537	ZXDC1 knockdown	  	        
GSM1103983 1	Veh_PMA_3 Gene expression data from cell line differentiated with PMA in the absence of doxycycline-inducible knockdown of ZXDC1/2	U937-derived cell line harboring TRIPZ-shRNAmir TetOn cassette (clone ID: V3THS-381738)	PMA treated, no doxycycline; biological replicate 3	U937	EFO	EFO_0001257	Histiocytic Lymphoma	EFO	EFO_0001642	control	EFO	EFO_0001461	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE45417-2	ArrayExpress	P-GSE45417-3	ArrayExpress	P-GSE45417-4	ArrayExpress	GSM1103983 extract 1	total RNA	P-GSE45417-5	ArrayExpress	GSM1103983 LE 1	biotin	P-GSE45417-6	ArrayExpress	GSM1103983	A-AFFY-44	ArrayExpress	array assay	P-GSE45417-7	ArrayExpress	GSM1103983_VEH_PMA3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.raw.1.zip	P-GSE45417-1	ArrayExpress	GSM1103983_sample_table.txt norm	GSM1103983_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.processed.1.zip	PMA	EFO	http://purl.obolibrary.org/obo/CHEBI_37537	control	EFO	EFO_0001461
GSM1103982 1	Dox_Veh_3 Gene expression data from cell line treated with vehicle in the presence of doxycycline-inducible knockdown of ZXDC1/2	U937-derived cell line harboring TRIPZ-shRNAmir TetOn cassette (clone ID: V3THS-381738)	Vehicle treated,  doxycycline treated; biological replicate 3	U937	EFO	EFO_0001257	Histiocytic Lymphoma	EFO	EFO_0001642	ZXDC1 knockdown	  	  	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE45417-2	ArrayExpress	P-GSE45417-3	ArrayExpress	P-GSE45417-4	ArrayExpress	GSM1103982 extract 1	total RNA	P-GSE45417-5	ArrayExpress	GSM1103982 LE 1	biotin	P-GSE45417-6	ArrayExpress	GSM1103982	A-AFFY-44	ArrayExpress	array assay	P-GSE45417-7	ArrayExpress	GSM1103982_DOX_VEH3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.raw.1.zip	P-GSE45417-1	ArrayExpress	GSM1103982_sample_table.txt norm	GSM1103982_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.processed.1.zip	vehicle	  	  	ZXDC1 knockdown	  	        
GSM1103981 1	Veh_Veh_3 Gene expression data from cell line treated with vehicle in the absence of doxycycline-inducible knockdown of ZXDC1/2	U937-derived cell line harboring TRIPZ-shRNAmir TetOn cassette (clone ID: V3THS-381738)	Vehicle treated, no doxycycline; biological replicate 3	U937	EFO	EFO_0001257	Histiocytic Lymphoma	EFO	EFO_0001642	control	EFO	EFO_0001461	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE45417-2	ArrayExpress	P-GSE45417-3	ArrayExpress	P-GSE45417-4	ArrayExpress	GSM1103981 extract 1	total RNA	P-GSE45417-5	ArrayExpress	GSM1103981 LE 1	biotin	P-GSE45417-6	ArrayExpress	GSM1103981	A-AFFY-44	ArrayExpress	array assay	P-GSE45417-7	ArrayExpress	GSM1103981_VEH_VEH3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.raw.1.zip	P-GSE45417-1	ArrayExpress	GSM1103981_sample_table.txt norm	GSM1103981_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.processed.1.zip	vehicle	  	  	control	EFO	EFO_0001461
GSM1103980 1	Dox_PMA_2 Gene expression data from cell line differentiated with PMA in the presence of doxycycline-inducible knockdown of ZXDC1/2	U937-derived cell line harboring TRIPZ-shRNAmir TetOn cassette (clone ID: V3THS-381738)	PMA treated, doxycycline treated; biological replicate 2	U937	EFO	EFO_0001257	Histiocytic Lymphoma	EFO	EFO_0001642	ZXDC1 knockdown	  	  	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE45417-2	ArrayExpress	P-GSE45417-3	ArrayExpress	P-GSE45417-4	ArrayExpress	GSM1103980 extract 1	total RNA	P-GSE45417-5	ArrayExpress	GSM1103980 LE 1	biotin	P-GSE45417-6	ArrayExpress	GSM1103980	A-AFFY-44	ArrayExpress	array assay	P-GSE45417-7	ArrayExpress	GSM1103980_DOX_PMA2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.raw.1.zip	P-GSE45417-1	ArrayExpress	GSM1103980_sample_table.txt norm	GSM1103980_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.processed.1.zip	PMA	EFO	http://purl.obolibrary.org/obo/CHEBI_37537	ZXDC1 knockdown	  	        
GSM1103979 1	Veh_PMA_2 Gene expression data from cell line differentiated with PMA in the absence of doxycycline-inducible knockdown of ZXDC1/2	U937-derived cell line harboring TRIPZ-shRNAmir TetOn cassette (clone ID: V3THS-381738)	PMA treated, no doxycycline; biological replicate 2	U937	EFO	EFO_0001257	Histiocytic Lymphoma	EFO	EFO_0001642	control	EFO	EFO_0001461	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE45417-2	ArrayExpress	P-GSE45417-3	ArrayExpress	P-GSE45417-4	ArrayExpress	GSM1103979 extract 1	total RNA	P-GSE45417-5	ArrayExpress	GSM1103979 LE 1	biotin	P-GSE45417-6	ArrayExpress	GSM1103979	A-AFFY-44	ArrayExpress	array assay	P-GSE45417-7	ArrayExpress	GSM1103979_VEH_PMA2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.raw.1.zip	P-GSE45417-1	ArrayExpress	GSM1103979_sample_table.txt norm	GSM1103979_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.processed.1.zip	PMA	EFO	http://purl.obolibrary.org/obo/CHEBI_37537	control	EFO	EFO_0001461
GSM1103978 1	Dox_Veh_2 Gene expression data from cell line treated with vehicle in the presence of doxycycline-inducible knockdown of ZXDC1/2	U937-derived cell line harboring TRIPZ-shRNAmir TetOn cassette (clone ID: V3THS-381738)	Vehicle treated,  doxycycline treated; biological replicate 2	U937	EFO	EFO_0001257	Histiocytic Lymphoma	EFO	EFO_0001642	ZXDC1 knockdown	  	  	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE45417-2	ArrayExpress	P-GSE45417-3	ArrayExpress	P-GSE45417-4	ArrayExpress	GSM1103978 extract 1	total RNA	P-GSE45417-5	ArrayExpress	GSM1103978 LE 1	biotin	P-GSE45417-6	ArrayExpress	GSM1103978	A-AFFY-44	ArrayExpress	array assay	P-GSE45417-7	ArrayExpress	GSM1103978_DOX_VEH2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.raw.1.zip	P-GSE45417-1	ArrayExpress	GSM1103978_sample_table.txt norm	GSM1103978_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.processed.1.zip	vehicle	  	  	ZXDC1 knockdown	  	        
GSM1103977 1	Veh_Veh_2 Gene expression data from cell line treated with vehicle in the absence of doxycycline-inducible knockdown of ZXDC1/2	U937-derived cell line harboring TRIPZ-shRNAmir TetOn cassette (clone ID: V3THS-381738)	Vehicle treated, no doxycycline; biological replicate 2	U937	EFO	EFO_0001257	Histiocytic Lymphoma	EFO	EFO_0001642	control	EFO	EFO_0001461	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE45417-2	ArrayExpress	P-GSE45417-3	ArrayExpress	P-GSE45417-4	ArrayExpress	GSM1103977 extract 1	total RNA	P-GSE45417-5	ArrayExpress	GSM1103977 LE 1	biotin	P-GSE45417-6	ArrayExpress	GSM1103977	A-AFFY-44	ArrayExpress	array assay	P-GSE45417-7	ArrayExpress	GSM1103977_VEH_VEH2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.raw.1.zip	P-GSE45417-1	ArrayExpress	GSM1103977_sample_table.txt norm	GSM1103977_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.processed.1.zip	vehicle	  	  	control	EFO	EFO_0001461
GSM1103976 1	Dox_PMA_1 Gene expression data from cell line differentiated with PMA in the presence of doxycycline-inducible knockdown of ZXDC1/2	U937-derived cell line harboring TRIPZ-shRNAmir TetOn cassette (clone ID: V3THS-381738)	PMA treated, doxycycline treated; biological replicate 1	U937	EFO	EFO_0001257	Histiocytic Lymphoma	EFO	EFO_0001642	ZXDC1 knockdown	  	  	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE45417-2	ArrayExpress	P-GSE45417-3	ArrayExpress	P-GSE45417-4	ArrayExpress	GSM1103976 extract 1	total RNA	P-GSE45417-5	ArrayExpress	GSM1103976 LE 1	biotin	P-GSE45417-6	ArrayExpress	GSM1103976	A-AFFY-44	ArrayExpress	array assay	P-GSE45417-7	ArrayExpress	GSM1103976_DOX_PMA1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.raw.1.zip	P-GSE45417-1	ArrayExpress	GSM1103976_sample_table.txt norm	GSM1103976_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.processed.1.zip	PMA	EFO	http://purl.obolibrary.org/obo/CHEBI_37537	ZXDC1 knockdown	  	        
GSM1103975 1	Veh_PMA_1 Gene expression data from cell line differentiated with PMA in the absence of doxycycline-inducible knockdown of ZXDC1/2	U937-derived cell line harboring TRIPZ-shRNAmir TetOn cassette (clone ID: V3THS-381738)	PMA treated, no doxycycline; biological replicate 1	U937	EFO	EFO_0001257	Histiocytic Lymphoma	EFO	EFO_0001642	control	EFO	EFO_0001461	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE45417-2	ArrayExpress	P-GSE45417-3	ArrayExpress	P-GSE45417-4	ArrayExpress	GSM1103975 extract 1	total RNA	P-GSE45417-5	ArrayExpress	GSM1103975 LE 1	biotin	P-GSE45417-6	ArrayExpress	GSM1103975	A-AFFY-44	ArrayExpress	array assay	P-GSE45417-7	ArrayExpress	GSM1103975_VEH_PMA1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.raw.1.zip	P-GSE45417-1	ArrayExpress	GSM1103975_sample_table.txt norm	GSM1103975_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.processed.1.zip	PMA	EFO	http://purl.obolibrary.org/obo/CHEBI_37537	control	EFO	EFO_0001461
GSM1103974 1	Dox_Veh_1 Gene expression data from cell line treated with vehicle in the presence of doxycycline-inducible knockdown of ZXDC1/2	U937-derived cell line harboring TRIPZ-shRNAmir TetOn cassette (clone ID: V3THS-381738)	Vehicle treated, doxycycline treated; biological replicate 1	U937	EFO	EFO_0001257	Histiocytic Lymphoma	EFO	EFO_0001642	ZXDC1 knockdown	  	  	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE45417-2	ArrayExpress	P-GSE45417-3	ArrayExpress	P-GSE45417-4	ArrayExpress	GSM1103974 extract 1	total RNA	P-GSE45417-5	ArrayExpress	GSM1103974 LE 1	biotin	P-GSE45417-6	ArrayExpress	GSM1103974	A-AFFY-44	ArrayExpress	array assay	P-GSE45417-7	ArrayExpress	GSM1103974_DOX_VEH1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.raw.1.zip	P-GSE45417-1	ArrayExpress	GSM1103974_sample_table.txt norm	GSM1103974_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.processed.1.zip	vehicle	  	  	ZXDC1 knockdown	  	        
GSM1103973 1	Veh_Veh_1 Gene expression data from cell line treated with vehicle in the absence of doxycycline-inducible knockdown of ZXDC1/2	U937-derived cell line harboring TRIPZ-shRNAmir TetOn cassette (clone ID: V3THS-381738)	Vehicle treated, no doxycycline; biological replicate 1	U937	EFO	EFO_0001257	Histiocytic Lymphoma	EFO	EFO_0001642	control	EFO	EFO_0001461	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE45417-2	ArrayExpress	P-GSE45417-3	ArrayExpress	P-GSE45417-4	ArrayExpress	GSM1103973 extract 1	total RNA	P-GSE45417-5	ArrayExpress	GSM1103973 LE 1	biotin	P-GSE45417-6	ArrayExpress	GSM1103973	A-AFFY-44	ArrayExpress	array assay	P-GSE45417-7	ArrayExpress	GSM1103973_VEH_VEH1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.raw.1.zip	P-GSE45417-1	ArrayExpress	GSM1103973_sample_table.txt norm	GSM1103973_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-45417/E-GEOD-45417.processed.1.zip	vehicle	  	  	control	EFO	EFO_0001461