Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell type]	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [TREATMENT]
GSM1094316 1	082911_LW_TD3_HuGene-1_0-st-v1	Human Cell line HEK293	HEK293DYG cell line treated for 12 h with 1 �g/mL doxycycline and 10�M trimethoprim Replicate #3	HEK293T-Rex cells expressing tet-inducible GFP and DHFR.YFP	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44950-2	ArrayExpress	GSM1094316 extract 1	total RNA	P-GSE44950-3	ArrayExpress	GSM1094316 LE 1	Biotin	P-GSE44950-4	ArrayExpress	GSM1094316	A-AFFY-141	ArrayExpress	array assay	P-GSE44950-5	ArrayExpress	GSM1094316_082911_LW_TD3_HuGene-1_0-st-v1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44950/E-GEOD-44950.raw.1.zip	P-GSE44950-1	ArrayExpress	GSM1094316_sample_table.txt norm	GSM1094316_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44950/E-GEOD-44950.processed.1.zip	12 h with 1 �g/mL doxycycline and 10�M trimethoprim
GSM1094315 1	082911_LW_TD2_HuGene-1_0-st-v1	Human Cell line HEK293	HEK293DYG cell line treated for 12 h with 1 �g/mL doxycycline and 10�M trimethoprim Replicate #2	HEK293T-Rex cells expressing tet-inducible GFP and DHFR.YFP	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44950-2	ArrayExpress	GSM1094315 extract 1	total RNA	P-GSE44950-3	ArrayExpress	GSM1094315 LE 1	Biotin	P-GSE44950-4	ArrayExpress	GSM1094315	A-AFFY-141	ArrayExpress	array assay	P-GSE44950-5	ArrayExpress	GSM1094315_082911_LW_TD2_HuGene-1_0-st-v1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44950/E-GEOD-44950.raw.1.zip	P-GSE44950-1	ArrayExpress	GSM1094315_sample_table.txt norm	GSM1094315_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44950/E-GEOD-44950.processed.1.zip	12 h with 1 �g/mL doxycycline and 10�M trimethoprim
GSM1094314 1	082911_LW_TD1_HuGene-1_0-st-v1	Human Cell line HEK293	HEK293DYG cell line treated for 12 h with 1 �g/mL doxycycline and 10�M trimethoprim Replicate #1	HEK293T-Rex cells expressing tet-inducible GFP and DHFR.YFP	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44950-2	ArrayExpress	GSM1094314 extract 1	total RNA	P-GSE44950-3	ArrayExpress	GSM1094314 LE 1	Biotin	P-GSE44950-4	ArrayExpress	GSM1094314	A-AFFY-141	ArrayExpress	array assay	P-GSE44950-5	ArrayExpress	GSM1094314_082911_LW_TD1_HuGene-1_0-st-v1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44950/E-GEOD-44950.raw.1.zip	P-GSE44950-1	ArrayExpress	GSM1094314_sample_table.txt norm	GSM1094314_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44950/E-GEOD-44950.processed.1.zip	12 h with 1 �g/mL doxycycline and 10�M trimethoprim
GSM1094313 1	082911_LW_Veh3_HuGene-1_0-st-v1	Human Cell line HEK293	HEK293DYG cell line treated for 12 h with DMSO Replicate #3	HEK293T-Rex cells expressing tet-inducible GFP and DHFR.YFP	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44950-2	ArrayExpress	GSM1094313 extract 1	total RNA	P-GSE44950-3	ArrayExpress	GSM1094313 LE 1	Biotin	P-GSE44950-4	ArrayExpress	GSM1094313	A-AFFY-141	ArrayExpress	array assay	P-GSE44950-5	ArrayExpress	GSM1094313_082911_LW_Veh3_HuGene-1_0-st-v1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44950/E-GEOD-44950.raw.1.zip	P-GSE44950-1	ArrayExpress	GSM1094313_sample_table.txt norm	GSM1094313_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44950/E-GEOD-44950.processed.1.zip	12 h with DMSO
GSM1094312 1	082911_LW_Veh2_HuGene-1_0-st-v1	Human Cell line HEK293	HEK293DYG cell line treated for 12 h with DMSO Replicate #2	HEK293T-Rex cells expressing tet-inducible GFP and DHFR.YFP	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44950-2	ArrayExpress	GSM1094312 extract 1	total RNA	P-GSE44950-3	ArrayExpress	GSM1094312 LE 1	Biotin	P-GSE44950-4	ArrayExpress	GSM1094312	A-AFFY-141	ArrayExpress	array assay	P-GSE44950-5	ArrayExpress	GSM1094312_082911_LW_Veh2_HuGene-1_0-st-v1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44950/E-GEOD-44950.raw.1.zip	P-GSE44950-1	ArrayExpress	GSM1094312_sample_table.txt norm	GSM1094312_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44950/E-GEOD-44950.processed.1.zip	12 h with DMSO
GSM1094311 1	082911_LW_Veh1_HuGene-1_0-st-v1	Human Cell line HEK293	HEK293DYG cell line treated for 12 h with DMSO Replicate #1	HEK293T-Rex cells expressing tet-inducible GFP and DHFR.YFP	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44950-2	ArrayExpress	GSM1094311 extract 1	total RNA	P-GSE44950-3	ArrayExpress	GSM1094311 LE 1	Biotin	P-GSE44950-4	ArrayExpress	GSM1094311	A-AFFY-141	ArrayExpress	array assay	P-GSE44950-5	ArrayExpress	GSM1094311_082911_LW_Veh1_HuGene-1_0-st-v1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44950/E-GEOD-44950.raw.1.zip	P-GSE44950-1	ArrayExpress	GSM1094311_sample_table.txt norm	GSM1094311_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44950/E-GEOD-44950.processed.1.zip	12 h with DMSO