Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [cell type] Characteristics [genotype] Characteristics [organism] Term Source REF Term Accession Number Characteristics [organism part] Term Source REF Term Accession Number Characteristics [strain] Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [CELL TYPE] FactorValue [GENOTYPE] GSM1092543 1 lung CD45 cells RNA, color-swap array polarity - 129S2 IFNaR1 KO day14 M.tuberculosis infected CD45+ cells 129S2 IFNaR1 KO d14 Mtb CD45+ vs. 129S2 IFNaR1 KO naive CD45+ CD45+ cells type I interferon receptor (IFNAR1) gene knock-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092543 extract 1 total RNA P-GSE44848-5 ArrayExpress GSM1092543 LE 1 Cy3 P-GSE44848-6 ArrayExpress GSM1092543 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092543_US22502595_251486835971_S01_GE2_105_Jan09_1_4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092543_sample_table.txt norm GSM1092543_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45+ cells type I interferon receptor (IFNAR1) gene knock-out GSM1092543 2 lung CD45 cells RNA, color-swap array polarity - 129S2 IFNaR1 KO day14 naive CD45+ cells 129S2 IFNaR1 KO d14 Mtb CD45+ vs. 129S2 IFNaR1 KO naive CD45+ CD45+ cells type I interferon receptor (IFNAR1) gene knock-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092543 extract 2 total RNA P-GSE44848-5 ArrayExpress GSM1092543 LE 2 Cy5 P-GSE44848-6 ArrayExpress GSM1092543 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092543_US22502595_251486835971_S01_GE2_105_Jan09_1_4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092543_sample_table.txt norm GSM1092543_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45+ cells type I interferon receptor (IFNAR1) gene knock-out GSM1092542 1 lung CD45 cells RNA, color-swap array polarity + 129S2 IFNaR1 KO day14 naive CD45+ cells 129S2 IFNaR1 KO naive CD45+ vs. 129S2 IFNaR1 KO d14 Mtb CD45+ CD45+ cells type I interferon receptor (IFNAR1) gene knock-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092542 extract 1 total RNA P-GSE44848-5 ArrayExpress GSM1092542 LE 1 Cy3 P-GSE44848-6 ArrayExpress GSM1092542 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092542_US22502595_251486835971_S01_GE2_105_Jan09_1_3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092542_sample_table.txt norm GSM1092542_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45+ cells type I interferon receptor (IFNAR1) gene knock-out GSM1092542 2 lung CD45 cells RNA, color-swap array polarity + 129S2 IFNaR1 KO day14 M.tuberculosis infected CD45+ cells 129S2 IFNaR1 KO naive CD45+ vs. 129S2 IFNaR1 KO d14 Mtb CD45+ CD45+ cells type I interferon receptor (IFNAR1) gene knock-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092542 extract 2 total RNA P-GSE44848-5 ArrayExpress GSM1092542 LE 2 Cy5 P-GSE44848-6 ArrayExpress GSM1092542 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092542_US22502595_251486835971_S01_GE2_105_Jan09_1_3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092542_sample_table.txt norm GSM1092542_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45+ cells type I interferon receptor (IFNAR1) gene knock-out GSM1092541 1 lung CD45 cells RNA, color-swap array polarity - 129S2 IFNaR1 KO day14 M.tuberculosis infected CD45- cells 129S2 IFNaR1 KO d14 Mtb CD45- vs. 129S2 IFNaR1 KO naive CD45- CD45- cells type I interferon receptor (IFNAR1) gene knock-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092541 extract 1 total RNA P-GSE44848-5 ArrayExpress GSM1092541 LE 1 Cy3 P-GSE44848-6 ArrayExpress GSM1092541 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092541_US22502595_251486835971_S01_GE2_105_Jan09_1_2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092541_sample_table.txt norm GSM1092541_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45- cells type I interferon receptor (IFNAR1) gene knock-out GSM1092541 2 lung CD45 cells RNA, color-swap array polarity - 129S2 IFNaR1 KO day14 naive CD45- cells 129S2 IFNaR1 KO d14 Mtb CD45- vs. 129S2 IFNaR1 KO naive CD45- CD45- cells type I interferon receptor (IFNAR1) gene knock-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092541 extract 2 total RNA P-GSE44848-5 ArrayExpress GSM1092541 LE 2 Cy5 P-GSE44848-6 ArrayExpress GSM1092541 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092541_US22502595_251486835971_S01_GE2_105_Jan09_1_2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092541_sample_table.txt norm GSM1092541_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45- cells type I interferon receptor (IFNAR1) gene knock-out GSM1092540 1 lung CD45 cells RNA, color-swap array polarity + 129S2 IFNaR1 KO day14 naive CD45- cells 129S2 IFNaR1 KO naive CD45- vs. 129S2 IFNaR1 KO d14 Mtb CD45- CD45- cells type I interferon receptor (IFNAR1) gene knock-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092540 extract 1 total RNA P-GSE44848-5 ArrayExpress GSM1092540 LE 1 Cy3 P-GSE44848-6 ArrayExpress GSM1092540 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092540_US22502595_251486835971_S01_GE2_105_Jan09_1_1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092540_sample_table.txt norm GSM1092540_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45- cells type I interferon receptor (IFNAR1) gene knock-out GSM1092540 2 lung CD45 cells RNA, color-swap array polarity + 129S2 IFNaR1 KO day14 M.tuberculosis infected CD45- cells 129S2 IFNaR1 KO naive CD45- vs. 129S2 IFNaR1 KO d14 Mtb CD45- CD45- cells type I interferon receptor (IFNAR1) gene knock-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092540 extract 2 total RNA P-GSE44848-5 ArrayExpress GSM1092540 LE 2 Cy5 P-GSE44848-6 ArrayExpress GSM1092540 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092540_US22502595_251486835971_S01_GE2_105_Jan09_1_1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092540_sample_table.txt norm GSM1092540_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45- cells type I interferon receptor (IFNAR1) gene knock-out GSM1092539 2 lung CD45 cells RNA, color-swap array polarity - 129S2 day 14 naive CD45+ cells 129S2 d14 Mtb CD45+ vs. 129S2 naive CD45+ CD45+ cells wildtype Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092539 extract 2 total RNA P-GSE44848-5 ArrayExpress GSM1092539 LE 2 Cy5 P-GSE44848-6 ArrayExpress GSM1092539 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092539_US22502595_251486835970_S01_GE2_105_Jan09_1_4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092539_sample_table.txt norm GSM1092539_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45+ cells wildtype GSM1092539 1 lung CD45 cells RNA, color-swap array polarity - 129S2 day14 M.tuberculosis infected CD45+ cells 129S2 d14 Mtb CD45+ vs. 129S2 naive CD45+ CD45+ cells wildtype Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092539 extract 1 total RNA P-GSE44848-5 ArrayExpress GSM1092539 LE 1 Cy3 P-GSE44848-6 ArrayExpress GSM1092539 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092539_US22502595_251486835970_S01_GE2_105_Jan09_1_4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092539_sample_table.txt norm GSM1092539_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45+ cells wildtype GSM1092538 1 lung CD45 cells RNA, color-swap array polarity + 129S2 day 14 naive CD45+ cells 129S2 naive CD45+ vs. 129S2 d14 Mtb CD45+ CD45+ cells wildtype Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092538 extract 1 total RNA P-GSE44848-5 ArrayExpress GSM1092538 LE 1 Cy3 P-GSE44848-6 ArrayExpress GSM1092538 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092538_US22502595_251486835970_S01_GE2_105_Jan09_1_3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092538_sample_table.txt norm GSM1092538_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45+ cells wildtype GSM1092538 2 lung CD45 cells RNA, color-swap array polarity + 129S2 day14 M.tuberculosis infected CD45+ cells 129S2 naive CD45+ vs. 129S2 d14 Mtb CD45+ CD45+ cells wildtype Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092538 extract 2 total RNA P-GSE44848-5 ArrayExpress GSM1092538 LE 2 Cy5 P-GSE44848-6 ArrayExpress GSM1092538 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092538_US22502595_251486835970_S01_GE2_105_Jan09_1_3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092538_sample_table.txt norm GSM1092538_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45+ cells wildtype GSM1092537 2 lung CD45 cells RNA, color-swap array polarity - 129S2 day 14 naive CD45- cells 129S2 d14 Mtb CD45- vs. 129S2 naive CD45- CD45- cells wildtype Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092537 extract 2 total RNA P-GSE44848-5 ArrayExpress GSM1092537 LE 2 Cy5 P-GSE44848-6 ArrayExpress GSM1092537 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092537_US22502595_251486835970_S01_GE2_105_Jan09_1_2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092537_sample_table.txt norm GSM1092537_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45- cells wildtype GSM1092537 1 lung CD45 cells RNA, color-swap array polarity - 129S2 day14 M.tuberculosis infected CD45- cells 129S2 d14 Mtb CD45- vs. 129S2 naive CD45- CD45- cells wildtype Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092537 extract 1 total RNA P-GSE44848-5 ArrayExpress GSM1092537 LE 1 Cy3 P-GSE44848-6 ArrayExpress GSM1092537 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092537_US22502595_251486835970_S01_GE2_105_Jan09_1_2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092537_sample_table.txt norm GSM1092537_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45- cells wildtype GSM1092536 1 lung CD45 cells RNA, color-swap array polarity + 129S2 day 14 naive CD45- cells 129S2 naive CD45- vs. 129S2 d14 Mtb CD45- CD45- cells wildtype Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092536 extract 1 total RNA P-GSE44848-5 ArrayExpress GSM1092536 LE 1 Cy3 P-GSE44848-6 ArrayExpress GSM1092536 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092536_US22502595_251486835970_S01_GE2_105_Jan09_1_1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092536_sample_table.txt norm GSM1092536_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45- cells wildtype GSM1092536 2 lung CD45 cells RNA, color-swap array polarity + 129S2 day14 M.tuberculosis infected CD45- cells 129S2 naive CD45- vs. 129S2 d14 Mtb CD45- CD45- cells wildtype Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092536 extract 2 total RNA P-GSE44848-5 ArrayExpress GSM1092536 LE 2 Cy5 P-GSE44848-6 ArrayExpress GSM1092536 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092536_US22502595_251486835970_S01_GE2_105_Jan09_1_1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092536_sample_table.txt norm GSM1092536_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip CD45- cells wildtype GSM1092535 2 total lung RNA, color-swap array polarity - 129S2 IFNaR1 KO day14 naiv 129S2 IFNaR1 KO d14 M.tb vs. 129S2 IFNaR1 KO naiv naive type I interferon receptor (IFNAR1) gene knock-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092535 extract 2 total RNA P-GSE44848-5 ArrayExpress GSM1092535 LE 2 Cy5 P-GSE44848-6 ArrayExpress GSM1092535 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092535_US22502595_251486818205_S01_GE2_105_Dec08_1_2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092535_sample_table.txt norm GSM1092535_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip naive type I interferon receptor (IFNAR1) gene knock-out GSM1092535 1 total lung RNA, color-swap array polarity - 129S2 IFNaR1 KO day14 M.tuberculosis infected 129S2 IFNaR1 KO d14 M.tb vs. 129S2 IFNaR1 KO naiv naive type I interferon receptor (IFNAR1) gene knock-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092535 extract 1 total RNA P-GSE44848-5 ArrayExpress GSM1092535 LE 1 Cy3 P-GSE44848-6 ArrayExpress GSM1092535 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092535_US22502595_251486818205_S01_GE2_105_Dec08_1_2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092535_sample_table.txt norm GSM1092535_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip naive type I interferon receptor (IFNAR1) gene knock-out GSM1092534 1 total lung RNA, color-swap array polarity + 129S2 IFNaR1 KO day14 naive CD45- cells 129S2 IFNaR1 KO naiv vs. 129S2 IFNaR1 KO d14 Mtb naive type I interferon receptor (IFNAR1) gene knock-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092534 extract 1 total RNA P-GSE44848-5 ArrayExpress GSM1092534 LE 1 Cy3 P-GSE44848-6 ArrayExpress GSM1092534 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092534_US22502595_251486818205_S01_GE2_105_Dec08_1_1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092534_sample_table.txt norm GSM1092534_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip naive type I interferon receptor (IFNAR1) gene knock-out GSM1092534 2 total lung RNA, color-swap array polarity + 129S2 IFNaR1 KO day14 M.tuberculosis infected 129S2 IFNaR1 KO naiv vs. 129S2 IFNaR1 KO d14 Mtb naive type I interferon receptor (IFNAR1) gene knock-out Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092534 extract 2 total RNA P-GSE44848-5 ArrayExpress GSM1092534 LE 2 Cy5 P-GSE44848-6 ArrayExpress GSM1092534 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092534_US22502595_251486818205_S01_GE2_105_Dec08_1_1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092534_sample_table.txt norm GSM1092534_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip naive type I interferon receptor (IFNAR1) gene knock-out GSM1092533 2 total lung RNA, color-swap array polarity - 129S2 day 14 naive 129S2 d14 Mtb vs. 129S2 naiv naive wildtype Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092533 extract 2 total RNA P-GSE44848-5 ArrayExpress GSM1092533 LE 2 Cy5 P-GSE44848-6 ArrayExpress GSM1092533 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092533_US22502595_251486818204_S01_GE2_105_Dec08_1_2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092533_sample_table.txt norm GSM1092533_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip naive wildtype GSM1092533 1 total lung RNA, color-swap array polarity - 129S2 day14 M.tuberculosis infected 129S2 d14 Mtb vs. 129S2 naiv naive wildtype Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092533 extract 1 total RNA P-GSE44848-5 ArrayExpress GSM1092533 LE 1 Cy3 P-GSE44848-6 ArrayExpress GSM1092533 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092533_US22502595_251486818204_S01_GE2_105_Dec08_1_2.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092533_sample_table.txt norm GSM1092533_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip naive wildtype GSM1092532 1 total lung RNA, color-swap array polarity + 129S2 day 14 naive 129S2 naiv vs. 129S2 d14 Mtb naive wildtype Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092532 extract 1 total RNA P-GSE44848-5 ArrayExpress GSM1092532 LE 1 Cy3 P-GSE44848-6 ArrayExpress GSM1092532 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092532_US22502595_251486818204_S01_GE2_105_Dec08_1_1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092532_sample_table.txt norm GSM1092532_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip naive wildtype GSM1092532 2 total lung RNA, color-swap array polarity + 129S2 day14 M.tuberculosis infected 129S2 naiv vs. 129S2 d14 Mtb naive wildtype Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 lung EFO http://purl.obolibrary.org/obo/UBERON_0002048 129S2 P-GSE44848-2 ArrayExpress P-GSE44848-3 ArrayExpress P-GSE44848-4 ArrayExpress GSM1092532 extract 2 total RNA P-GSE44848-5 ArrayExpress GSM1092532 LE 2 Cy5 P-GSE44848-6 ArrayExpress GSM1092532 A-MEXP-724 ArrayExpress array assay P-GSE44848-7 ArrayExpress GSM1092532_US22502595_251486818204_S01_GE2_105_Dec08_1_1.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.raw.1.zip P-GSE44848-1 ArrayExpress GSM1092532_sample_table.txt norm GSM1092532_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44848/E-GEOD-44848.processed.1.zip naive wildtype