Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [disease] Term Source REF Term Accession Number Characteristics [er] Characteristics [her2] Characteristics [organism] Term Source REF Term Accession Number Characteristics [sex] Term Source REF Term Accession Number Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [ER] GSM1092266 1 ZR-75-30_day3 jhu_251485070425_S01_GE2_107_Sep09_1_2_ZR-75-30 Mock Day3 RNA-Cy3_ZR-75-30 AZA Day3 RNA_Cy5 ZR-75-30 breast cancer cell line, day 3 ZR-75-30_day3_expression Breast Cancer EFO EFO_0000305 + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092266 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092266 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092266 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092266_jhu_251485070425_S01_GE2_107_Sep09_1_2_ZR-75-30_Mock_Day3_RNA-Cy3_ZR-75-30_AZA_Day3_RNA_Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.1.zip P-GSE44838-1 ArrayExpress GSM1092266_sample_table.txt norm GSM1092266_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092265 1 ZR-75-1_day3 jhu_251485067907_S01_GE2_107_Sep09_1_2_ZR-75-1 Mock Day3-Cy3_ZR-75-1 AZA Day3-Cy5 ZR-75-1 breast cancer cell line, day 3 ZR-75-1_day3_expression Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092265 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092265 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092265 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092265_jhu_251485067907_S01_GE2_107_Sep09_1_2_ZR-75-1_Mock_Day3-Cy3_ZR-75-1_AZA_Day3-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.1.zip P-GSE44838-1 ArrayExpress GSM1092265_sample_table.txt norm GSM1092265_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092264 1 T47D_day3 jhu_251485064913_S01_GE2_107_Sep09_1_2_T47D Mock Day3 RNA-Cy5_T47D AZA Day3 RNA-Cy3 T47D breast cancer cell line, day 3 T47D_day3_expression Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092264 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092264 LE 1 Cy5 P-GSE44838-6 ArrayExpress GSM1092264 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092264_jhu_251485064913_S01_GE2_107_Sep09_1_2_T47D_Mock_Day3_RNA-Cy5_T47D_AZA_Day3_RNA-Cy3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.1.zip P-GSE44838-1 ArrayExpress GSM1092264_sample_table.txt norm GSM1092264_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092263 1 SUM159PT_day3 jhu_251485070422_S01_GE2_107_Sep09_1_2_SUM159 Mock Day3 RNA-Cy3_SUM159 AZA Day3 RNA_Cy5 SUM159PT breast cancer cell line, day 3 SUM159PT_day3_expression Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092263 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092263 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092263 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092263_jhu_251485070422_S01_GE2_107_Sep09_1_2_SUM159_Mock_Day3_RNA-Cy3_SUM159_AZA_Day3_RNA_Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.1.zip P-GSE44838-1 ArrayExpress GSM1092263_sample_table.txt norm GSM1092263_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092262 1 SUM149PT_day3 jhu_251485070421_S01_GE2_107_Sep09_1_2_SUM149 Mock Day3 RNA-Cy3_SUM149 AZA Day3 RNA_Cy5 SUM149PT breast cancer cell line, day 3 SUM149PT_day3_expression Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092262 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092262 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092262 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092262_jhu_251485070421_S01_GE2_107_Sep09_1_2_SUM149_Mock_Day3_RNA-Cy3_SUM149_AZA_Day3_RNA_Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.1.zip P-GSE44838-1 ArrayExpress GSM1092262_sample_table.txt norm GSM1092262_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092261 1 SK-BR-3_day3 jhu_251485071078_S01_GE2_107_Sep09_1_2_SKBR3 Mock Day3 RNA-Cy3_SKBR3 AZA Day3 RNA-Cy5 SK-BR-3 breast cancer cell line, day 3 SK-BR-3_day3_expression Breast Cancer EFO EFO_0000305 - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092261 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092261 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092261 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092261_jhu_251485071078_S01_GE2_107_Sep09_1_2_SKBR3_Mock_Day3_RNA-Cy3_SKBR3_AZA_Day3_RNA-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.1.zip P-GSE44838-1 ArrayExpress GSM1092261_sample_table.txt norm GSM1092261_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092260 1 MDA-MB-468_day3 jhu_251485067910_S01_GE2_107_Sep09_1_2_MDA453 Mock Day3-Cy3_MDA453 AZA Day3-Cy5 MDA-MB-468 breast cancer cell line, day 3 MDA-MB-468_day3_expression Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092260 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092260 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092260 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092260_jhu_251485067910_S01_GE2_107_Sep09_1_2_MDA453_Mock_Day3-Cy3_MDA453_AZA_Day3-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.1.zip P-GSE44838-1 ArrayExpress GSM1092260_sample_table.txt norm GSM1092260_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092259 1 MDA-MB-453_day3 jhu_251485067911_S01_GE2_107_Sep09_1_2_MDA468 Mock Day3-Cy3_MDA468 AZA Day3-Cy5 MDA-MB-453 breast cancer cell line, day 3 MDA-MB-453_day3_expression Breast Cancer EFO EFO_0000305 - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092259 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092259 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092259 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092259_jhu_251485067911_S01_GE2_107_Sep09_1_2_MDA468_Mock_Day3-Cy3_MDA468_AZA_Day3-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.1.zip P-GSE44838-1 ArrayExpress GSM1092259_sample_table.txt norm GSM1092259_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092258 1 MDA-MB-436_day3 jhu_251485071079_S01_GE2_107_Sep09_1_2_MDA436 Mock Day3 RNA-Cy3_MDA436 AZA Day3 RNA-Cy5 MDA-MB-436 breast cancer cell line, day 3 MDA-MB-436_day3_expression Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092258 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092258 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092258 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092258_jhu_251485071079_S01_GE2_107_Sep09_1_2_MDA436_Mock_Day3_RNA-Cy3_MDA436_AZA_Day3_RNA-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.1.zip P-GSE44838-1 ArrayExpress GSM1092258_sample_table.txt norm GSM1092258_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092257 1 MDA-MB-415_day3 jhu_251485071077_S01_GE2_107_Sep09_1_2_MDA415 Mock Day3 RNA-Cy3_MDA415 AZA Day3 RNA-Cy5 MDA-MB-415 breast cancer cell line, day 3 MDA-MB-415_day3_expression Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092257 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092257 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092257 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092257_jhu_251485071077_S01_GE2_107_Sep09_1_2_MDA415_Mock_Day3_RNA-Cy3_MDA415_AZA_Day3_RNA-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.1.zip P-GSE44838-1 ArrayExpress GSM1092257_sample_table.txt norm GSM1092257_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092256 1 MDA-MB-361_day3 jhu_251485067908_S01_GE2_107_Sep09_1_2_MDA361Mock Day3-Cy3_MDA361AZA Day3-Cy5 MDA-MB-361 breast cancer cell line, day 3 MDA-MB-361_day3_expression Breast Cancer EFO EFO_0000305 + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092256 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092256 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092256 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092256_jhu_251485067908_S01_GE2_107_Sep09_1_2_MDA361Mock_Day3-Cy3_MDA361AZA_Day3-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.1.zip P-GSE44838-1 ArrayExpress GSM1092256_sample_table.txt norm GSM1092256_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092255 1 MDA-MB-231_day3 jhu_251485067909_S01_GE2_107_Sep09_1_2_MDA231 Mock Day3-Cy3_MDA231 AZA Day3-Cy5 MDA-MB-231 breast cancer cell line, day 3 MDA-MB-231_day3_expression Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092255 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092255 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092255 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092255_jhu_251485067909_S01_GE2_107_Sep09_1_2_MDA231_Mock_Day3-Cy3_MDA231_AZA_Day3-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.1.zip P-GSE44838-1 ArrayExpress GSM1092255_sample_table.txt norm GSM1092255_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092254 1 MDA-MB-175-VII_day3 jhu_251485071080_S01_GE2_107_Sep09_1_2_MDA175 Mock Day3 RNA-Cy3_MDA175 AZA Day3 RNA-Cy5 MDA-MB-175-VII breast cancer cell line, day 3 MDA-MB-175-VII_day3_expression Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092254 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092254 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092254 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092254_jhu_251485071080_S01_GE2_107_Sep09_1_2_MDA175_Mock_Day3_RNA-Cy3_MDA175_AZA_Day3_RNA-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.2.zip P-GSE44838-1 ArrayExpress GSM1092254_sample_table.txt norm GSM1092254_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092253 1 MCF7_day3 jhu_251485070373_S01_GE2_107_Sep09_1_2_MCF7 Mock Day3 RNA-Cy3_MCF7 AZA Day3 RNA_Cy5 MCF7 breast cancer cell line, day 3 MCF7_day3_expression Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092253 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092253 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092253 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092253_jhu_251485070373_S01_GE2_107_Sep09_1_2_MCF7_Mock_Day3_RNA-Cy3_MCF7_AZA_Day3_RNA_Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.2.zip P-GSE44838-1 ArrayExpress GSM1092253_sample_table.txt norm GSM1092253_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092252 1 HCC38_day3 jhu_251485070374_S01_GE2_107_Sep09_1_2_HCC38 Mock Day3 RNA-Cy3_HCC38 AZA Day3 RNA_Cy5 HCC38 breast cancer cell line, day 3 HCC38_day3_expression Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092252 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092252 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092252 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092252_jhu_251485070374_S01_GE2_107_Sep09_1_2_HCC38_Mock_Day3_RNA-Cy3_HCC38_AZA_Day3_RNA_Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.2.zip P-GSE44838-1 ArrayExpress GSM1092252_sample_table.txt norm GSM1092252_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092251 1 HCC1954_day3 jhu_251485071037_S01_GE2_107_Sep09_1_2_HCC1954 Mock Day3 RNA-Cy3_HCC1954 AZA Day3 RNA-Cy5 HCC1954 breast cancer cell line, day 3 HCC1954_day3_expression Breast Cancer EFO EFO_0000305 - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092251 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092251 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092251 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092251_jhu_251485071037_S01_GE2_107_Sep09_1_2_HCC1954_Mock_Day3_RNA-Cy3_HCC1954_AZA_Day3_RNA-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.2.zip P-GSE44838-1 ArrayExpress GSM1092251_sample_table.txt norm GSM1092251_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092250 1 HCC1937_day3 jhu_251485068036_S01_GE2_107_Sep09_1_2_HCC1937 Mock Day3-Cy3_HCC1937 AZA Day3-Cy5 HCC1937 breast cancer cell line, day 3 HCC1937_day3_expression Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092250 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092250 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092250 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092250_jhu_251485068036_S01_GE2_107_Sep09_1_2_HCC1937_Mock_Day3-Cy3_HCC1937_AZA_Day3-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.2.zip P-GSE44838-1 ArrayExpress GSM1092250_sample_table.txt norm GSM1092250_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092249 1 HCC1569_day3 jhu_251485070370_S01_GE2_107_Sep09_1_2_HCC1569 Mock Day3 RNA-Cy3_HCC1569 AZA Day3 RNA_Cy5 HCC1569 breast cancer cell line, day 3 HCC1569_day3_expression Breast Cancer EFO EFO_0000305 - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092249 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092249 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092249 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092249_jhu_251485070370_S01_GE2_107_Sep09_1_2_HCC1569_Mock_Day3_RNA-Cy3_HCC1569_AZA_Day3_RNA_Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.2.zip P-GSE44838-1 ArrayExpress GSM1092249_sample_table.txt norm GSM1092249_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092248 1 HCC1500_day3 jhu_251485070424_S01_GE2_107_Sep09_1_2_HCC1500 Mock Day3 RNA-Cy3_HCC1500 AZA Day3 RNA_Cy5 HCC1500 breast cancer cell line, day 3 HCC1500_day3_expression Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092248 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092248 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092248 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092248_jhu_251485070424_S01_GE2_107_Sep09_1_2_HCC1500_Mock_Day3_RNA-Cy3_HCC1500_AZA_Day3_RNA_Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.2.zip P-GSE44838-1 ArrayExpress GSM1092248_sample_table.txt norm GSM1092248_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092247 1 HCC1419_day3 jhu_251485071041_S01_GE2_107_Sep09_1_2_HCC1419 Mock Day3 RNA-Cy3_HCC1419 AZA Day3 RNA-Cy5 HCC1419 breast cancer cell line, day 3 HCC1419_day3_expression Breast Cancer EFO EFO_0000305 + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092247 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092247 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092247 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092247_jhu_251485071041_S01_GE2_107_Sep09_1_2_HCC1419_Mock_Day3_RNA-Cy3_HCC1419_AZA_Day3_RNA-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.2.zip P-GSE44838-1 ArrayExpress GSM1092247_sample_table.txt norm GSM1092247_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092246 1 HCC1187_day3 jhu_251485071040_S01_GE2_107_Sep09_1_2_HCC1187 Mock Day3 RNA-Cy3_HCC1187 AZA Day3 RNA-Cy5 HCC1187 breast cancer cell line, day 3 HCC1187_day3_expression Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092246 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092246 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092246 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092246_jhu_251485071040_S01_GE2_107_Sep09_1_2_HCC1187_Mock_Day3_RNA-Cy3_HCC1187_AZA_Day3_RNA-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.2.zip P-GSE44838-1 ArrayExpress GSM1092246_sample_table.txt norm GSM1092246_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092245 1 EFM192A_day3 jhu_251485071039_S01_GE2_107_Sep09_1_2_EFM192A Mock Day3 RNA-Cy3_EFM192A AZA Day3 RNA-Cy5 EFM192A breast cancer cell line, day 3 EFM192A_day3_expression Breast Cancer EFO EFO_0000305 + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092245 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092245 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092245 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092245_jhu_251485071039_S01_GE2_107_Sep09_1_2_EFM192A_Mock_Day3_RNA-Cy3_EFM192A_AZA_Day3_RNA-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.2.zip P-GSE44838-1 ArrayExpress GSM1092245_sample_table.txt norm GSM1092245_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092244 1 EFM19_day3 jhu_251485070372_S01_GE2_107_Sep09_1_2_EFM19 Mock Day3 RNA-Cy3_EFM19 AZA Day3 RNA_Cy5 EFM19 breast cancer cell line, day 3 EFM19_day3_expression Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092244 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092244 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092244 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092244_jhu_251485070372_S01_GE2_107_Sep09_1_2_EFM19_Mock_Day3_RNA-Cy3_EFM19_AZA_Day3_RNA_Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.2.zip P-GSE44838-1 ArrayExpress GSM1092244_sample_table.txt norm GSM1092244_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092243 1 CAMA1_day3 jhu_251485071076_S01_GE2_107_Sep09_1_2_CAMA1 Mock Day3 RNA-Cy3_CAMA1 AZA Day3 RNA-Cy5 CAMA1 breast cancer cell line, day 3 CAMA1_day3_expression Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092243 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092243 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092243 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092243_jhu_251485071076_S01_GE2_107_Sep09_1_2_CAMA1_Mock_Day3_RNA-Cy3_CAMA1_AZA_Day3_RNA-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.2.zip P-GSE44838-1 ArrayExpress GSM1092243_sample_table.txt norm GSM1092243_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092242 1 BT-474_day3 jhu_251485071038_S01_GE2_107_Sep09_1_2_BT474 Mock Day3 RNA-Cy3_BT474 AZA Day3 RNA-Cy5 BT-474 breast cancer cell line, day 3 BT-474_day3_expression Breast Cancer EFO EFO_0000305 + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092242 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092242 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092242 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092242_jhu_251485071038_S01_GE2_107_Sep09_1_2_BT474_Mock_Day3_RNA-Cy3_BT474_AZA_Day3_RNA-Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.2.zip P-GSE44838-1 ArrayExpress GSM1092242_sample_table.txt norm GSM1092242_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092241 1 BT-20_day3 jhu_251485070371_S01_GE2_107_Sep09_1_2_BT20 Mock Day3 RNA-Cy3_BT20 AZA Day3 RNA_Cy5 BT-20 breast cancer cell line, day 3 BT-20_day3_expression Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-4 ArrayExpress GSM1092241 extract 1 total RNA P-GSE44838-5 ArrayExpress GSM1092241 LE 1 Cy3 P-GSE44838-6 ArrayExpress GSM1092241 A-AGIL-28 ArrayExpress array assay P-GSE44838-7 ArrayExpress GSM1092241_jhu_251485070371_S01_GE2_107_Sep09_1_2_BT20_Mock_Day3_RNA-Cy3_BT20_AZA_Day3_RNA_Cy5.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.raw.3.zip P-GSE44838-1 ArrayExpress GSM1092241_sample_table.txt norm GSM1092241_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092292 1 ZR-75-30_day3 ZR-75-30 d3 ZR-75-30 breast cancer cell line, day 3 ZR-75-30_day3_methyl Breast Cancer EFO EFO_0000305 + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092292 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092292 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092292 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092292_sample_table.txt norm GSM1092292_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092291 1 ZR-75-1_day3 ZR-75-1 d3 ZR-75-1 breast cancer cell line, day 3 ZR-75-1_day3_methyl Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092291 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092291 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092291 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092291_sample_table.txt norm GSM1092291_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092290 1 T47D_day3 T47D d3 T47D breast cancer cell line, day 3 T47D_day3_methyl Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092290 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092290 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092290 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092290_sample_table.txt norm GSM1092290_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092289 1 SUM159PT_day3 SUM159PT d3 SUM159PT breast cancer cell line, day 3 SUM159PT_day3_methyl Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092289 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092289 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092289 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092289_sample_table.txt norm GSM1092289_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092288 1 SUM149PT_day3 SUM149PT d3 SUM149PT breast cancer cell line, day 3 SUM149PT_day3_methyl Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092288 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092288 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092288 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092288_sample_table.txt norm GSM1092288_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092287 1 SK-BR-3_day3 SK-BR-3 d3 SK-BR-3 breast cancer cell line, day 3 SK-BR-3_day3_methyl Breast Cancer EFO EFO_0000305 - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092287 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092287 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092287 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092287_sample_table.txt norm GSM1092287_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092286 1 MDA-MB-468_day3 MDA-MB-468 d3 MDA-MB-468 breast cancer cell line, day 3 MDA-MB-468_day3_methyl Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092286 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092286 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092286 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092286_sample_table.txt norm GSM1092286_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092285 1 MDA-MB-453_day3 MDA-MB-453 d3 MDA-MB-453 breast cancer cell line, day 3 MDA-MB-453_day3_methyl Breast Cancer EFO EFO_0000305 - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092285 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092285 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092285 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092285_sample_table.txt norm GSM1092285_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092284 1 MDA-MB-436_day3 MDA-MB-436 d3 MDA-MB-436 breast cancer cell line, day 3 MDA-MB-436_day3_methyl Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092284 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092284 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092284 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092284_sample_table.txt norm GSM1092284_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092283 1 MDA-MB-415_day3 MDA-MB-415 d3 MDA-MB-415 breast cancer cell line, day 3 MDA-MB-415_day3_methyl Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092283 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092283 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092283 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092283_sample_table.txt norm GSM1092283_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092282 1 MDA-MB-361_day3 MDA-MB-361 d3 MDA-MB-361 breast cancer cell line, day 3 MDA-MB-361_day3_methyl Breast Cancer EFO EFO_0000305 + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092282 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092282 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092282 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092282_sample_table.txt norm GSM1092282_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092281 1 MDA-MB-231_day3 MDA-MB-231 d3 MDA-MB-231 breast cancer cell line, day 3 MDA-MB-231_day3_methyl Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092281 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092281 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092281 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092281_sample_table.txt norm GSM1092281_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092280 1 MDA-MB-175-VII_day3 MDA-MB-175-VII d3 MDA-MB-175-VII breast cancer cell line, day 3 MDA-MB-175-VII_day3_methyl Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092280 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092280 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092280 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092280_sample_table.txt norm GSM1092280_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092279 1 MCF7_day3 MCF7 d3 MCF7 breast cancer cell line, day 3 MCF7_day3_methyl Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092279 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092279 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092279 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092279_sample_table.txt norm GSM1092279_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092278 1 HCC38_day3 HCC38 d3 HCC38 breast cancer cell line, day 3 HCC38_day3_methyl Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092278 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092278 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092278 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092278_sample_table.txt norm GSM1092278_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092277 1 HCC1954_day3 HCC1954 d3 HCC1954 breast cancer cell line, day 3 HCC1954_day3_methyl Breast Cancer EFO EFO_0000305 - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092277 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092277 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092277 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092277_sample_table.txt norm GSM1092277_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092276 1 HCC1937_day3 HCC1937 d3 HCC1937 breast cancer cell line, day 3 HCC1937_day3_methyl Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092276 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092276 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092276 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092276_sample_table.txt norm GSM1092276_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092275 1 HCC1569_day3 HCC1569 d3 HCC1569 breast cancer cell line, day 3 HCC1569_day3_methyl Breast Cancer EFO EFO_0000305 - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092275 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092275 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092275 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092275_sample_table.txt norm GSM1092275_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092274 1 HCC1500_day3 HCC1500 d3 HCC1500 breast cancer cell line, day 3 HCC1500_day3_methyl Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092274 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092274 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092274 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092274_sample_table.txt norm GSM1092274_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092273 1 HCC1419_day3 HCC1419 d3 HCC1419 breast cancer cell line, day 3 HCC1419_day3_methyl Breast Cancer EFO EFO_0000305 + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092273 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092273 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092273 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092273_sample_table.txt norm GSM1092273_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092272 1 HCC1187_day3 HCC1187 d3 HCC1187 breast cancer cell line, day 3 HCC1187_day3_methyl Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092272 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092272 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092272 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092272_sample_table.txt norm GSM1092272_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip - GSM1092271 1 EFM192A_day3 EFM192A d3 EFM192A breast cancer cell line, day 3 EFM192A_day3_methyl Breast Cancer EFO EFO_0000305 + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092271 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092271 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092271 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092271_sample_table.txt norm GSM1092271_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092270 1 EFM19_day3 EFM19 d3 EFM19 breast cancer cell line, day 3 EFM19_day3_methyl Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092270 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092270 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092270 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092270_sample_table.txt norm GSM1092270_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092269 1 CAMA1_day3 CAMA1 d3 CAMA1 breast cancer cell line, day 3 CAMA1_day3_methyl Breast Cancer EFO EFO_0000305 + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092269 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092269 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092269 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092269_sample_table.txt norm GSM1092269_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092268 1 BT-474_day3 BT-474 d3 BT-474 breast cancer cell line, day 3 BT-474_day3_methyl Breast Cancer EFO EFO_0000305 + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092268 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092268 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092268 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092268_sample_table.txt norm GSM1092268_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip + GSM1092267 1 BT-20_day3 BT-20 d3 BT-20 breast cancer cell line, day 3 BT-20_day3_methyl Breast Cancer EFO EFO_0000305 - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 female EFO EFO_0001265 P-GSE44838-3 ArrayExpress P-GSE44838-8 ArrayExpress GSM1092267 extract 1 genomic DNA P-GSE44838-9 ArrayExpress GSM1092267 LE 1 Cy5 and Cy3 P-GSE44838-10 ArrayExpress GSM1092267 A-GEOD-13534 ArrayExpress array assay P-GSE44838-11 ArrayExpress P-GSE44838-2 ArrayExpress GSM1092267_sample_table.txt norm GSM1092267_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44838/E-GEOD-44838.processed.1.zip -