Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [background strain] Term Source REF Term Accession Number Characteristics [etiology] Characteristics [h-ras] Characteristics [organism] Term Source REF Term Accession Number Characteristics [organism part] Term Source REF Term Accession Number Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [ETIOLOGY] FactorValue [H-RAS] FactorValue [ORGANISM PART] Term Source REF Term Accession Number GSM1091763 1 Gene expression data from normal mammary tissue of rat normal mammary tissue of rat normal mammary tissue, replicate 3 Sprague-Dawley rats EFO EFO_0001352 n/a n/a Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 normal EFO EFO_0000761 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091763 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091763 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091763 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091763_121.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091763_sample_table.txt norm GSM1091763_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip n/a n/a normal EFO EFO_0000761 GSM1091762 1 Gene expression data from normal mammary tissue of rat normal mammary tissue of rat normal mammary tissue, replicate 2 Sprague-Dawley rats EFO EFO_0001352 n/a n/a Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 normal EFO EFO_0000761 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091762 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091762 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091762 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091762_118.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091762_sample_table.txt norm GSM1091762_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip n/a n/a normal EFO EFO_0000761 GSM1091761 1 Gene expression data from normal mammary tissue of rat normal mammary tissue of rat normal mammary tissue, replicate 1 Sprague-Dawley rats EFO EFO_0001352 n/a n/a Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 normal EFO EFO_0000761 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091761 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091761 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091761 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091761_117.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091761_sample_table.txt norm GSM1091761_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip n/a n/a normal EFO EFO_0000761 GSM1091760 1 Gene expression data from rat mammary cancer induced by combination of radiation and PhIP rat mammary cancer induced by combination of radiation and PhIP cancer, gamma rays plus PhIP, H-ras nonmutated, replicate 4 Sprague-Dawley rats EFO EFO_0001352 radiation + PhIP nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091760 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091760 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091760 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091760_116.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091760_sample_table.txt norm GSM1091760_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation + PhIP nonmutated cancer EFO EFO_0000311 GSM1091759 1 Gene expression data from rat mammary cancer induced by combination of radiation and PhIP rat mammary cancer induced by combination of radiation and PhIP cancer, gamma rays plus PhIP, H-ras nonmutated, replicate 3 Sprague-Dawley rats EFO EFO_0001352 radiation + PhIP nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091759 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091759 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091759 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091759_115.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091759_sample_table.txt norm GSM1091759_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation + PhIP nonmutated cancer EFO EFO_0000311 GSM1091758 1 Gene expression data from rat mammary cancer induced by combination of radiation and PhIP rat mammary cancer induced by combination of radiation and PhIP cancer, gamma rays plus PhIP, H-ras nonmutated, replicate 2 Sprague-Dawley rats EFO EFO_0001352 radiation + PhIP nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091758 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091758 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091758 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091758_113.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091758_sample_table.txt norm GSM1091758_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation + PhIP nonmutated cancer EFO EFO_0000311 GSM1091757 1 Gene expression data from rat mammary cancer induced by combination of radiation and PhIP rat mammary cancer induced by combination of radiation and PhIP cancer, gamma rays plus PhIP, H-ras nonmutated, replicate 1 Sprague-Dawley rats EFO EFO_0001352 radiation + PhIP nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091757 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091757 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091757 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091757_112.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091757_sample_table.txt norm GSM1091757_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation + PhIP nonmutated cancer EFO EFO_0000311 GSM1091756 1 Gene expression data from rat mammary cancer induced by combination of radiation and MNU rat mammary cancer induced by combination of radiation and MNU cancer, gamma rays plus MNU, H-ras nonmutated, replicate 4 Sprague-Dawley rats EFO EFO_0001352 radiation + MNU nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091756 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091756 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091756 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091756_108.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091756_sample_table.txt norm GSM1091756_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation + MNU nonmutated cancer EFO EFO_0000311 GSM1091755 1 Gene expression data from rat mammary cancer induced by combination of radiation and MNU rat mammary cancer induced by combination of radiation and MNU cancer, gamma rays plus MNU, H-ras nonmutated, replicate 3 Sprague-Dawley rats EFO EFO_0001352 radiation + MNU nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091755 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091755 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091755 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091755_107.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091755_sample_table.txt norm GSM1091755_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation + MNU nonmutated cancer EFO EFO_0000311 GSM1091754 1 Gene expression data from rat mammary cancer induced by combination of radiation and MNU rat mammary cancer induced by combination of radiation and MNU cancer, gamma rays plus MNU, H-ras nonmutated, replicate 2 Sprague-Dawley rats EFO EFO_0001352 radiation + MNU nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091754 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091754 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091754 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091754_106.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091754_sample_table.txt norm GSM1091754_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation + MNU nonmutated cancer EFO EFO_0000311 GSM1091753 1 Gene expression data from rat mammary cancer induced by combination of radiation and MNU rat mammary cancer induced by combination of radiation and MNU cancer, gamma rays plus MNU, H-ras nonmutated, replicate 1 Sprague-Dawley rats EFO EFO_0001352 radiation + MNU nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091753 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091753 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091753 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091753_105.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091753_sample_table.txt norm GSM1091753_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation + MNU nonmutated cancer EFO EFO_0000311 GSM1091752 1 Gene expression data from rat mammary cancer induced by combination of radiation and MNU rat mammary cancer induced by combination of radiation and MNU cancer, gamma rays plus MNU, H-ras mutated, replicate 5 Sprague-Dawley rats EFO EFO_0001352 radiation + MNU mutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091752 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091752 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091752 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091752_103.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091752_sample_table.txt norm GSM1091752_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation + MNU mutated cancer EFO EFO_0000311 GSM1091751 1 Gene expression data from rat mammary cancer induced by combination of radiation and MNU rat mammary cancer induced by combination of radiation and MNU cancer, gamma rays plus MNU, H-ras mutated, replicate 4 Sprague-Dawley rats EFO EFO_0001352 radiation + MNU mutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091751 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091751 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091751 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091751_102.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091751_sample_table.txt norm GSM1091751_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation + MNU mutated cancer EFO EFO_0000311 GSM1091750 1 Gene expression data from rat mammary cancer induced by combination of radiation and MNU rat mammary cancer induced by combination of radiation and MNU cancer, gamma rays plus MNU, H-ras mutated, replicate 3 Sprague-Dawley rats EFO EFO_0001352 radiation + MNU mutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091750 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091750 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091750 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091750_099.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091750_sample_table.txt norm GSM1091750_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation + MNU mutated cancer EFO EFO_0000311 GSM1091749 1 Gene expression data from rat mammary cancer induced by combination of radiation and MNU rat mammary cancer induced by combination of radiation and MNU cancer, gamma rays plus MNU, H-ras mutated, replicate 2 Sprague-Dawley rats EFO EFO_0001352 radiation + MNU mutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091749 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091749 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091749 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091749_097.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091749_sample_table.txt norm GSM1091749_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation + MNU mutated cancer EFO EFO_0000311 GSM1091748 1 Gene expression data from rat mammary cancer induced by combination of radiation and MNU rat mammary cancer induced by combination of radiation and MNU cancer, gamma rays plus MNU, H-ras mutated, replicate 1 Sprague-Dawley rats EFO EFO_0001352 radiation + MNU mutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091748 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091748 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091748 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091748_096.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091748_sample_table.txt norm GSM1091748_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation + MNU mutated cancer EFO EFO_0000311 GSM1091747 1 Gene expression data from PhIP-induced rat mammary cancer PhIP-induced rat mammary cancer cancer, PhIP, replicate 4 Sprague-Dawley rats EFO EFO_0001352 PhIP nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091747 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091747 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091747 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091747_032.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091747_sample_table.txt norm GSM1091747_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip PhIP nonmutated cancer EFO EFO_0000311 GSM1091746 1 Gene expression data from PhIP-induced rat mammary cancer PhIP-induced rat mammary cancer cancer, PhIP, replicate 3 Sprague-Dawley rats EFO EFO_0001352 PhIP nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091746 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091746 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091746 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091746_031.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091746_sample_table.txt norm GSM1091746_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip PhIP nonmutated cancer EFO EFO_0000311 GSM1091745 1 Gene expression data from PhIP-induced rat mammary cancer PhIP-induced rat mammary cancer cancer, PhIP, replicate 2 Sprague-Dawley rats EFO EFO_0001352 PhIP nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091745 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091745 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091745 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091745_029.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091745_sample_table.txt norm GSM1091745_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip PhIP nonmutated cancer EFO EFO_0000311 GSM1091744 1 Gene expression data from PhIP-induced rat mammary cancer PhIP-induced rat mammary cancer cancer, PhIP, replicate 1 Sprague-Dawley rats EFO EFO_0001352 PhIP mutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091744 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091744 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091744 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091744_028.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091744_sample_table.txt norm GSM1091744_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip PhIP mutated cancer EFO EFO_0000311 GSM1091743 1 Gene expression data from MNU-induced rat mammary cancer MNU-induced rat mammary cancer cancer, MNU, H-ras nonmutated, replicate 4 Sprague-Dawley rats EFO EFO_0001352 MNU nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091743 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091743 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091743 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091743_095.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091743_sample_table.txt norm GSM1091743_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip MNU nonmutated cancer EFO EFO_0000311 GSM1091742 1 Gene expression data from MNU-induced rat mammary cancer MNU-induced rat mammary cancer cancer, MNU, H-ras nonmutated, replicate 3 Sprague-Dawley rats EFO EFO_0001352 MNU nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091742 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091742 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091742 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091742_091.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091742_sample_table.txt norm GSM1091742_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip MNU nonmutated cancer EFO EFO_0000311 GSM1091741 1 Gene expression data from MNU-induced rat mammary cancer MNU-induced rat mammary cancer cancer, MNU, H-ras nonmutated, replicate 2 Sprague-Dawley rats EFO EFO_0001352 MNU nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091741 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091741 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091741 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091741_090.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091741_sample_table.txt norm GSM1091741_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip MNU nonmutated cancer EFO EFO_0000311 GSM1091740 1 Gene expression data from MNU-induced rat mammary cancer MNU-induced rat mammary cancer cancer, MNU, H-ras nonmutated, replicate 1 Sprague-Dawley rats EFO EFO_0001352 MNU nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091740 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091740 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091740 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091740_011.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091740_sample_table.txt norm GSM1091740_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip MNU nonmutated cancer EFO EFO_0000311 GSM1091739 1 Gene expression data from MNU-induced rat mammary cancer MNU-induced rat mammary cancer cancer, MNU, H-ras mutated, replicate 5 Sprague-Dawley rats EFO EFO_0001352 MNU mutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091739 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091739 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091739 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091739_049.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091739_sample_table.txt norm GSM1091739_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip MNU mutated cancer EFO EFO_0000311 GSM1091738 1 Gene expression data from MNU-induced rat mammary cancer MNU-induced rat mammary cancer cancer, MNU, H-ras mutated, replicate 4 Sprague-Dawley rats EFO EFO_0001352 MNU mutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091738 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091738 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091738 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091738_048.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091738_sample_table.txt norm GSM1091738_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip MNU mutated cancer EFO EFO_0000311 GSM1091737 1 Gene expression data from MNU-induced rat mammary cancer MNU-induced rat mammary cancer cancer, MNU, H-ras mutated, replicate 3 Sprague-Dawley rats EFO EFO_0001352 MNU mutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091737 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091737 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091737 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091737_047.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091737_sample_table.txt norm GSM1091737_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip MNU mutated cancer EFO EFO_0000311 GSM1091736 1 Gene expression data from MNU-induced rat mammary cancer MNU-induced rat mammary cancer cancer, MNU, H-ras mutated, replicate 2 Sprague-Dawley rats EFO EFO_0001352 MNU mutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091736 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091736 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091736 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091736_016.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091736_sample_table.txt norm GSM1091736_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip MNU mutated cancer EFO EFO_0000311 GSM1091735 1 Gene expression data from MNU-induced rat mammary cancer MNU-induced rat mammary cancer cancer, MNU, H-ras mutated, replicate 1 Sprague-Dawley rats EFO EFO_0001352 MNU mutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091735 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091735 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091735 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091735_010.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091735_sample_table.txt norm GSM1091735_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip MNU mutated cancer EFO EFO_0000311 GSM1091734 1 Gene expression data from radiation-induced rat mammary cancer radiation-induced rat mammary cancer cancer, gamma rays, replicate 4 Sprague-Dawley rats EFO EFO_0001352 radiation nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091734 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091734 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091734 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091734_086.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091734_sample_table.txt norm GSM1091734_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation nonmutated cancer EFO EFO_0000311 GSM1091733 1 Gene expression data from radiation-induced rat mammary cancer radiation-induced rat mammary cancer cancer, gamma rays, replicate 3 Sprague-Dawley rats EFO EFO_0001352 radiation nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091733 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091733 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091733 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091733_084.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091733_sample_table.txt norm GSM1091733_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation nonmutated cancer EFO EFO_0000311 GSM1091732 1 Gene expression data from radiation-induced rat mammary cancer radiation-induced rat mammary cancer cancer, gamma rays, replicate 2 Sprague-Dawley rats EFO EFO_0001352 radiation nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091732 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091732 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091732 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091732_083.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091732_sample_table.txt norm GSM1091732_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation nonmutated cancer EFO EFO_0000311 GSM1091731 1 Gene expression data from radiation-induced rat mammary cancer radiation-induced rat mammary cancer cancer, gamma rays, replicate 1 Sprague-Dawley rats EFO EFO_0001352 radiation nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091731 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091731 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091731 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091731_082.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091731_sample_table.txt norm GSM1091731_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip radiation nonmutated cancer EFO EFO_0000311 GSM1091730 1 Gene expression data from spontaneous rat mammary cancer spontaneous rat mammary cancer cancer, spontaneous, replicate 3 Sprague-Dawley rats EFO EFO_0001352 spontaneous nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091730 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091730 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091730 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091730_003.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091730_sample_table.txt norm GSM1091730_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip spontaneous nonmutated cancer EFO EFO_0000311 GSM1091729 1 Gene expression data from spontaneous rat mammary cancer spontaneous rat mammary cancer cancer, spontaneous, replicate 2 Sprague-Dawley rats EFO EFO_0001352 spontaneous nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091729 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091729 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091729 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091729_002.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091729_sample_table.txt norm GSM1091729_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip spontaneous nonmutated cancer EFO EFO_0000311 GSM1091728 1 Gene expression data from spontaneous rat mammary cancer spontaneous rat mammary cancer cancer, spontaneous, replicate 1 Sprague-Dawley rats EFO EFO_0001352 spontaneous nonmutated Rattus norvegicus EFO http://purl.obolibrary.org/obo/NCBITaxon_10116 cancer EFO EFO_0000311 P-GSE44786-2 ArrayExpress P-GSE44786-3 ArrayExpress P-GSE44786-4 ArrayExpress GSM1091728 extract 1 total RNA P-GSE44786-5 ArrayExpress GSM1091728 LE 1 biotin P-GSE44786-6 ArrayExpress GSM1091728 A-AFFY-43 ArrayExpress array assay P-GSE44786-7 ArrayExpress GSM1091728_001.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.raw.1.zip P-GSE44786-1 ArrayExpress GSM1091728_sample_table.txt norm GSM1091728_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44786/E-GEOD-44786.processed.1.zip spontaneous nonmutated cancer EFO EFO_0000311