Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell line]	Term Source REF	Term Accession Number	Characteristics [cell type]	Characteristics [lentivirus]	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [CELL TYPE]	FactorValue [LENTIVIRUS]
GSM1086974 1	Gb7 NICD	Gb7 glioma cancer stem cells, YFP-NICD lentivirus	Gb7 glioma stem cells infected with YFP-NICD lentivirus	  	  	  	Gb7 glioma cancer stem cells	YFP-NICD	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44561-9	ArrayExpress	P-GSE44561-2	ArrayExpress	P-GSE44561-4	ArrayExpress	GSM1086974 extract 1	total RNA	P-GSE44561-5	ArrayExpress	GSM1086974 LE 1	biotin	P-GSE44561-6	ArrayExpress	GSM1086974	A-GEOD-11532	ArrayExpress	array assay	P-GSE44561-7	ArrayExpress	GSM1086974_Gb7_NICD.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.raw.1.zip	P-GSE44561-1	ArrayExpress	GSM1086974_sample_table.txt norm	GSM1086974_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.processed.1.zip	Gb7 glioma cancer stem cells	YFP-NICD
GSM1086973 1	Gb7 control	Gb7 glioma cancer stem cells, YFP lentivirus	Gb7 glioma stem cells infected with YFP lentivirus	  	  	  	Gb7 glioma cancer stem cells	YFP	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44561-9	ArrayExpress	P-GSE44561-2	ArrayExpress	P-GSE44561-4	ArrayExpress	GSM1086973 extract 1	total RNA	P-GSE44561-5	ArrayExpress	GSM1086973 LE 1	biotin	P-GSE44561-6	ArrayExpress	GSM1086973	A-GEOD-11532	ArrayExpress	array assay	P-GSE44561-7	ArrayExpress	GSM1086973_Gb7_control.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.raw.1.zip	P-GSE44561-1	ArrayExpress	GSM1086973_sample_table.txt norm	GSM1086973_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.processed.1.zip	Gb7 glioma cancer stem cells	YFP
GSM1086972 1	Gb4 NICD	Gb4 glioma cancer stem cells, YFP-NICD lentivirus	Gb4 glioma stem cells infected with YFP-NICD lentivirus	  	  	  	Gb4 glioma cancer stem cells	YFP-NICD	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44561-9	ArrayExpress	P-GSE44561-2	ArrayExpress	P-GSE44561-4	ArrayExpress	GSM1086972 extract 1	total RNA	P-GSE44561-5	ArrayExpress	GSM1086972 LE 1	biotin	P-GSE44561-6	ArrayExpress	GSM1086972	A-GEOD-11532	ArrayExpress	array assay	P-GSE44561-7	ArrayExpress	GSM1086972_Gb4_NICD.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.raw.1.zip	P-GSE44561-1	ArrayExpress	GSM1086972_sample_table.txt norm	GSM1086972_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.processed.1.zip	Gb4 glioma cancer stem cells	YFP-NICD
GSM1086971 1	Gb4 control	Gb4 glioma cancer stem cells, YFP lentivirus	Gb4 glioma stem cells infected with YFP lentivirus	  	  	  	Gb4 glioma cancer stem cells	YFP	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44561-9	ArrayExpress	P-GSE44561-2	ArrayExpress	P-GSE44561-4	ArrayExpress	GSM1086971 extract 1	total RNA	P-GSE44561-5	ArrayExpress	GSM1086971 LE 1	biotin	P-GSE44561-6	ArrayExpress	GSM1086971	A-GEOD-11532	ArrayExpress	array assay	P-GSE44561-7	ArrayExpress	GSM1086971_Gb4_control.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.raw.1.zip	P-GSE44561-1	ArrayExpress	GSM1086971_sample_table.txt norm	GSM1086971_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.processed.1.zip	Gb4 glioma cancer stem cells	YFP
GSM1086970 1	U87 NICD	U87 high-grade glioma cell line, YFP-NICD lentivirus	U87 cell line infected with YFP-NICD lentivirus	U87	EFO	EFO_0001256	glioma cell line	YFP-NICD	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44561-8	ArrayExpress	P-GSE44561-2	ArrayExpress	P-GSE44561-4	ArrayExpress	GSM1086970 extract 1	total RNA	P-GSE44561-5	ArrayExpress	GSM1086970 LE 1	biotin	P-GSE44561-6	ArrayExpress	GSM1086970	A-GEOD-11532	ArrayExpress	array assay	P-GSE44561-7	ArrayExpress	GSM1086970_U87_NICD.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.raw.1.zip	P-GSE44561-1	ArrayExpress	GSM1086970_sample_table.txt norm	GSM1086970_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.processed.1.zip	glioma cell line	YFP-NICD
GSM1086969 1	U87 control	U87 high-grade glioma cell line, YFP lentivirus	U87 cell line infected with YFP lentivirus	U87	EFO	EFO_0001256	glioma cell line	YFP	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44561-8	ArrayExpress	P-GSE44561-2	ArrayExpress	P-GSE44561-4	ArrayExpress	GSM1086969 extract 1	total RNA	P-GSE44561-5	ArrayExpress	GSM1086969 LE 1	biotin	P-GSE44561-6	ArrayExpress	GSM1086969	A-GEOD-11532	ArrayExpress	array assay	P-GSE44561-7	ArrayExpress	GSM1086969_U87_control.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.raw.1.zip	P-GSE44561-1	ArrayExpress	GSM1086969_sample_table.txt norm	GSM1086969_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.processed.1.zip	glioma cell line	YFP
GSM1086968 1	HNP NICD	Embryonic human neural stem cells, YFP-NICD lentivirus	Human neural stem cell infected with YFP-NICD lentivirus	  	  	  	embryonic human neural stem cells	YFP-NICD	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44561-3	ArrayExpress	P-GSE44561-2	ArrayExpress	P-GSE44561-4	ArrayExpress	GSM1086968 extract 1	total RNA	P-GSE44561-5	ArrayExpress	GSM1086968 LE 1	biotin	P-GSE44561-6	ArrayExpress	GSM1086968	A-GEOD-11532	ArrayExpress	array assay	P-GSE44561-7	ArrayExpress	GSM1086968_HNP_NICD.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.raw.1.zip	P-GSE44561-1	ArrayExpress	GSM1086968_sample_table.txt norm	GSM1086968_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.processed.1.zip	embryonic human neural stem cells	YFP-NICD
GSM1086967 1	HNP control	Embryonic human neural stem cells, YFP lentivirus	Human neural stem cell infected with YFP lentivirus	  	  	  	embryonic human neural stem cells	YFP	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44561-3	ArrayExpress	P-GSE44561-2	ArrayExpress	P-GSE44561-4	ArrayExpress	GSM1086967 extract 1	total RNA	P-GSE44561-5	ArrayExpress	GSM1086967 LE 1	biotin	P-GSE44561-6	ArrayExpress	GSM1086967	A-GEOD-11532	ArrayExpress	array assay	P-GSE44561-7	ArrayExpress	GSM1086967_HNP_control.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.raw.1.zip	P-GSE44561-1	ArrayExpress	GSM1086967_sample_table.txt norm	GSM1086967_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44561/E-GEOD-44561.processed.1.zip	embryonic human neural stem cells	YFP