Source Name	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell line]	Term Source REF	Term Accession Number	Characteristics [cell type]	Term Source REF	Term Accession Number	Characteristics [organism part]	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Scan Name	Comment [ENA_RUN]	Comment [FASTQ_URI]	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [RNA interference]
GSM1084149 1	HEK292_SiNsun2_RNA-seq	Nsun_rep4	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084149 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084149	SRX243941	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748522_2.fastq.gz	SRR748522	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748522/SRR748522_2.fastq.gz	GSM1084149_Nsun_rep4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	siRNA against Nsun2
GSM1084149 1	HEK292_SiNsun2_RNA-seq	Nsun_rep4	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084149 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084149	SRX243941	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748522_1.fastq.gz	SRR748522	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748522/SRR748522_1.fastq.gz	GSM1084149_Nsun_rep4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	siRNA against Nsun2
GSM1084148 1	HEK292_SiNsun2_RNA-seq	Nsun_rep3	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084148 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084148	SRX243940	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748521_2.fastq.gz	SRR748521	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748521/SRR748521_2.fastq.gz	GSM1084148_Nsun_rep3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	siRNA against Nsun2
GSM1084148 1	HEK292_SiNsun2_RNA-seq	Nsun_rep3	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084148 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084148	SRX243940	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748521_1.fastq.gz	SRR748521	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748521/SRR748521_1.fastq.gz	GSM1084148_Nsun_rep3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	siRNA against Nsun2
GSM1084147 1	HEK292_SiNsun2_RNA-seq	Nsun_rep2	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084147 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084147	SRX243939	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748520_2.fastq.gz	SRR748520	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748520/SRR748520_2.fastq.gz	GSM1084147_Nsun_rep2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	siRNA against Nsun2
GSM1084147 1	HEK292_SiNsun2_RNA-seq	Nsun_rep2	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084147 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084147	SRX243939	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748520_1.fastq.gz	SRR748520	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748520/SRR748520_1.fastq.gz	GSM1084147_Nsun_rep2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	siRNA against Nsun2
GSM1084146 1	HEK292_SiNsun2_RNA-seq	Nsun_rep1	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084146 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084146	SRX243938	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748519_2.fastq.gz	SRR748519	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748519/SRR748519_2.fastq.gz	GSM1084146_Nsun_rep1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	siRNA against Nsun2
GSM1084146 1	HEK292_SiNsun2_RNA-seq	Nsun_rep1	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084146 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084146	SRX243938	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748519_1.fastq.gz	SRR748519	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748519/SRR748519_1.fastq.gz	GSM1084146_Nsun_rep1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	siRNA against Nsun2
GSM1084145 1	HEK292_Scr_RNA-seq	Scr_rep4	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084145 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084145	SRX243937	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748518_2.fastq.gz	SRR748518	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748518/SRR748518_2.fastq.gz	GSM1084145_Scr_rep4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	control
GSM1084145 1	HEK292_Scr_RNA-seq	Scr_rep4	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084145 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084145	SRX243937	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748518_1.fastq.gz	SRR748518	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748518/SRR748518_1.fastq.gz	GSM1084145_Scr_rep4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	control
GSM1084144 1	HEK292_Scr_RNA-seq	Scr_rep3	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084144 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084144	SRX243936	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748517_2.fastq.gz	SRR748517	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748517/SRR748517_2.fastq.gz	GSM1084144_Scr_rep3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	control
GSM1084144 1	HEK292_Scr_RNA-seq	Scr_rep3	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084144 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084144	SRX243936	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748517_1.fastq.gz	SRR748517	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748517/SRR748517_1.fastq.gz	GSM1084144_Scr_rep3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	control
GSM1084143 1	HEK292_Scr_RNA-seq	Scr_rep2	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084143 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084143	SRX243935	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748516_2.fastq.gz	SRR748516	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748516/SRR748516_2.fastq.gz	GSM1084143_Scr_rep2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	control
GSM1084143 1	HEK292_Scr_RNA-seq	Scr_rep2	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084143 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084143	SRX243935	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748516_1.fastq.gz	SRR748516	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748516/SRR748516_1.fastq.gz	GSM1084143_Scr_rep2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	control
GSM1084142 1	HEK292_Scr_RNA-seq	Scr_rep1	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084142 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084142	SRX243934	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748515_2.fastq.gz	SRR748515	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748515/SRR748515_2.fastq.gz	GSM1084142_Scr_rep1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	control
GSM1084142 1	HEK292_Scr_RNA-seq	Scr_rep1	HEK293	EFO	EFO_0001182	human embryonic kidney cell	EFO	EFO_0001182	kidney	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44384-1	ArrayExpress	P-GSE44384-2	ArrayExpress	GSM1084142 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1084142	SRX243934	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE44384-3	ArrayExpress	SRR748515_1.fastq.gz	SRR748515	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR748/SRR748515/SRR748515_1.fastq.gz	GSM1084142_Scr_rep1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44384/E-GEOD-44384.processed.1.zip	control